-
1
-
-
0035997389
-
RNA editing by adenosine deaminases that act on RNA
-
Bass BL (2002) RNA editing by adenosine deaminases that act on RNA. Annu Rev Biochem 71: 817-846.
-
(2002)
Annu Rev Biochem
, vol.71
, pp. 817-846
-
-
Bass, B.L.1
-
2
-
-
0029443743
-
Deamination of mammalian glutamate receptor RNA by Xenopus dsRNA adenosine deaminase: Similarities to in vivo RNA editing
-
Hurst SR, Hough RF, Aruscavage PJ, Bass BL (1995) Deamination of mammalian glutamate receptor RNA by Xenopus dsRNA adenosine deaminase: similarities to in vivo RNA editing. Rna 1: 1051-1060.
-
(1995)
Rna
, vol.1
, pp. 1051-1060
-
-
Hurst, S.R.1
Hough, R.F.2
Aruscavage, P.J.3
Bass, B.L.4
-
3
-
-
0027972952
-
Molecular cloning of cDNA for double-stranded RNA adenosine deaminase, a candidate enzyme for nuclear RNA editing
-
Kim U, Wang Y, Sanford T, Zeng Y, Nishikura K (1994) Molecular cloning of cDNA for double-stranded RNA adenosine deaminase, a candidate enzyme for nuclear RNA editing. Proc Natl Acad Sci U S A 91: 11457-11461.
-
(1994)
Proc Natl Acad Sci U S A
, vol.91
, pp. 11457-11461
-
-
Kim, U.1
Wang, Y.2
Sanford, T.3
Zeng, Y.4
Nishikura, K.5
-
4
-
-
0030051809
-
A mammalian RNA editing enzyme
-
Melcher T, Maas S, Herb A, Sprengel R, Seeburg PH, et al. (1996) A mammalian RNA editing enzyme. Nature 379: 460-464.
-
(1996)
Nature
, vol.379
, pp. 460-464
-
-
Melcher, T.1
Maas, S.2
Herb, A.3
Sprengel, R.4
Seeburg, P.H.5
-
5
-
-
0028872727
-
Cloning of cDNAs encoding mammalian double-stranded RNA-specific adenosine deaminase
-
O'Connell MA, Krause S, Higuchi M, Hsuan JJ, Totty NF, et al. (1995) Cloning of cDNAs encoding mammalian double-stranded RNA-specific adenosine deaminase. Mol Cell Biol 15: 1389-1397.
-
(1995)
Mol Cell Biol
, vol.15
, pp. 1389-1397
-
-
O'Connell, M.A.1
Krause, S.2
Higuchi, M.3
Hsuan, J.J.4
Totty, N.F.5
-
8
-
-
66349122954
-
Genome-wide identification of human RNA editing sites by parallel DNA capturing and sequencing
-
Li JB, Levanon EY, Yoon JK, Aach J, Xie B, et al. (2009) Genome-wide identification of human RNA editing sites by parallel DNA capturing and sequencing. Science 324: 1210-1213.
-
(2009)
Science
, vol.324
, pp. 1210-1213
-
-
Li, J.B.1
Levanon, E.Y.2
Yoon, J.K.3
Aach, J.4
Xie, B.5
-
9
-
-
12344300804
-
Widespread A-to-I RNA Editing of Alu-Containing mRNAs in the Human Transcriptome
-
10.1371/journal.pbio.0020391
-
Athanasiadis A, Rich A, Maas S (2004) Widespread A-to-I RNA Editing of Alu-Containing mRNAs in the Human Transcriptome. PLoS Biol 2: e391. 10.1371/journal.pbio.0020391.
-
(2004)
PLoS Biol
, vol.2
-
-
Athanasiadis, A.1
Rich, A.2
Maas, S.3
-
11
-
-
4644324088
-
Widespread RNA editing of embedded alu elements in the human transcriptome
-
Kim DD, Kim TT, Walsh T, Kobayashi Y, Matise TC, et al. (2004) Widespread RNA editing of embedded alu elements in the human transcriptome. Genome Res 14: 1719-1725.
-
(2004)
Genome Res
, vol.14
, pp. 1719-1725
-
-
Kim, D.D.1
Kim, T.T.2
Walsh, T.3
Kobayashi, Y.4
Matise, T.C.5
-
12
-
-
3543004084
-
Systematic identification of abundant A-to-I editing sites in the human transcriptome
-
Levanon EY, Eisenberg E, Yelin R, Nemzer S, Hallegger M, et al. (2004) Systematic identification of abundant A-to-I editing sites in the human transcriptome. Nat Biotechnol 22: 1001-1005.
-
(2004)
Nat Biotechnol
, vol.22
, pp. 1001-1005
-
-
Levanon, E.Y.1
Eisenberg, E.2
Yelin, R.3
Nemzer, S.4
Hallegger, M.5
-
13
-
-
50349093233
-
The AID/APOBEC family of nucleic acid mutators
-
Conticello SG (2008) The AID/APOBEC family of nucleic acid mutators. Genome Biol 9: 229.
-
(2008)
Genome Biol
, vol.9
, pp. 229
-
-
Conticello, S.G.1
-
14
-
-
0027434027
-
The p27 catalytic subunit of the apolipoprotein B mRNA editing enzyme is a cytidine deaminase
-
Navaratnam N, Morrison JR, Bhattacharya S, Patel D, Funahashi T, et al. (1993) The p27 catalytic subunit of the apolipoprotein B mRNA editing enzyme is a cytidine deaminase. J Biol Chem 268: 20709-20712.
-
(1993)
J Biol Chem
, vol.268
, pp. 20709-20712
-
-
Navaratnam, N.1
Morrison, J.R.2
Bhattacharya, S.3
Patel, D.4
Funahashi, T.5
-
15
-
-
0027200620
-
Molecular cloning of an apolipoprotein B messenger RNA editing protein
-
Teng B, Burant CF, Davidson NO (1993) Molecular cloning of an apolipoprotein B messenger RNA editing protein. Science 260: 1816-1819.
-
(1993)
Science
, vol.260
, pp. 1816-1819
-
-
Teng, B.1
Burant, C.F.2
Davidson, N.O.3
-
16
-
-
0036863733
-
RNA editing enzyme APOBEC1 and some of its homologs can act as DNA mutators
-
Harris RS, Petersen-Mahrt SK, Neuberger MS (2002) RNA editing enzyme APOBEC1 and some of its homologs can act as DNA mutators. Mol Cell 10: 1247-1253.
-
(2002)
Mol Cell
, vol.10
, pp. 1247-1253
-
-
Harris, R.S.1
Petersen-Mahrt, S.K.2
Neuberger, M.S.3
-
17
-
-
0033603340
-
Specific expression of activation-induced cytidine deaminase (AID), a novel member of the RNA-editing deaminase family in germinal center B cells
-
Muramatsu M, Sankaranand VS, Anant S, Sugai M, Kinoshita K, et al. (1999) Specific expression of activation-induced cytidine deaminase (AID), a novel member of the RNA-editing deaminase family in germinal center B cells. J Biol Chem 274: 18470-18476.
-
(1999)
J Biol Chem
, vol.274
, pp. 18470-18476
-
-
Muramatsu, M.1
Sankaranand, V.S.2
Anant, S.3
Sugai, M.4
Kinoshita, K.5
-
18
-
-
0034268780
-
Class switch recombination and hypermutation require activation-induced cytidine deaminase (AID), a potential RNA editing enzyme
-
Muramatsu M, Kinoshita K, Fagarasan S, Yamada S, Shinkai Y, et al. (2000) Class switch recombination and hypermutation require activation-induced cytidine deaminase (AID), a potential RNA editing enzyme. Cell 102: 553-563.
-
(2000)
Cell
, vol.102
, pp. 553-563
-
-
Muramatsu, M.1
Kinoshita, K.2
Fagarasan, S.3
Yamada, S.4
Shinkai, Y.5
-
19
-
-
0034264851
-
Activationinduced cytidine deaminase (AID) deficiency causes the autosomal recessive form of the Hyper-IgM syndrome (HIGM2)
-
Revy P, Muto T, Levy Y, Geissmann F, Plebani A, et al. (2000) Activationinduced cytidine deaminase (AID) deficiency causes the autosomal recessive form of the Hyper-IgM syndrome (HIGM2). Cell 102: 565-575.
-
(2000)
Cell
, vol.102
, pp. 565-575
-
-
Revy, P.1
Muto, T.2
Levy, Y.3
Geissmann, F.4
Plebani, A.5
-
20
-
-
0036200070
-
An anthropoid-specific locus of orphan C to U RNA-editing enzymes on chromosome 22
-
Jarmuz A, Chester A, Bayliss J, Gisbourne J, Dunham I, et al. (2002) An anthropoid-specific locus of orphan C to U RNA-editing enzymes on chromosome 22. Genomics 79: 285-296.
-
(2002)
Genomics
, vol.79
, pp. 285-296
-
-
Jarmuz, A.1
Chester, A.2
Bayliss, J.3
Gisbourne, J.4
Dunham, I.5
-
21
-
-
0037043699
-
Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein
-
Sheehy AM, Gaddis NC, Choi JD, Malim MH (2002) Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein. Nature 418: 646-650.
-
(2002)
Nature
, vol.418
, pp. 646-650
-
-
Sheehy, A.M.1
Gaddis, N.C.2
Choi, J.D.3
Malim, M.H.4
-
22
-
-
0345270035
-
Messenger RNA editing in mammals: New members of the APOBEC family seeking roles in the family business
-
Wedekind JE, Dance GS, Sowden MP, Smith HC (2003) Messenger RNA editing in mammals: new members of the APOBEC family seeking roles in the family business. Trends Genet 19: 207-216.
-
(2003)
Trends Genet
, vol.19
, pp. 207-216
-
-
Wedekind, J.E.1
Dance, G.S.2
Sowden, M.P.3
Smith, H.C.4
-
23
-
-
0033970066
-
Molecular cloning of apobec-1 complementation factor, a novel RNA-binding protein involved in the editing of apolipoprotein B mRNA
-
Mehta A, Kinter MT, Sherman NE, Driscoll DM (2000) Molecular cloning of apobec-1 complementation factor, a novel RNA-binding protein involved in the editing of apolipoprotein B mRNA. Mol Cell Biol 20: 1846-1854.
-
(2000)
Mol Cell Biol
, vol.20
, pp. 1846-1854
-
-
Mehta, A.1
Kinter, M.T.2
Sherman, N.E.3
Driscoll, D.M.4
-
24
-
-
0034733528
-
Purification and molecular cloning of a novel essential component of the apolipoprotein B mRNA editing enzyme-complex
-
Lellek H, Kirsten R, Diehl I, Apostel F, Buck F, et al. (2000) Purification and molecular cloning of a novel essential component of the apolipoprotein B mRNA editing enzyme-complex. J Biol Chem 275: 19848-19856.
-
(2000)
J Biol Chem
, vol.275
, pp. 19848-19856
-
-
Lellek, H.1
Kirsten, R.2
Diehl, I.3
Apostel, F.4
Buck, F.5
-
25
-
-
0038681901
-
DNA deamination mediates innate immunity to retroviral infection
-
Harris RS, Bishop KN, Sheehy AM, Craig HM, Petersen-Mahrt SK, et al. (2003) DNA deamination mediates innate immunity to retroviral infection. Cell 113: 803-809.
-
(2003)
Cell
, vol.113
, pp. 803-809
-
-
Harris, R.S.1
Bishop, K.N.2
Sheehy, A.M.3
Craig, H.M.4
Petersen-Mahrt, S.K.5
-
26
-
-
0038681023
-
Broad antiretroviral defence by human APOBEC3G through lethal editing of nascent reverse transcripts
-
Mangeat B, Turelli P, Caron G, Friedli M, Perrin L, et al. (2003) Broad antiretroviral defence by human APOBEC3G through lethal editing of nascent reverse transcripts. Nature 424: 99-103.
-
(2003)
Nature
, vol.424
, pp. 99-103
-
-
Mangeat, B.1
Turelli, P.2
Caron, G.3
Friedli, M.4
Perrin, L.5
-
27
-
-
0038107587
-
Speciesspecific exclusion of APOBEC3G from HIV-1 virions by Vif
-
Mariani R, Chen D, Schrofelbauer B, Navarro F, Konig R, et al. (2003) Speciesspecific exclusion of APOBEC3G from HIV-1 virions by Vif. Cell 114: 21-31.
-
(2003)
Cell
, vol.114
, pp. 21-31
-
-
Mariani, R.1
Chen, D.2
Schrofelbauer, B.3
Navarro, F.4
Konig, R.5
-
28
-
-
42049096136
-
Evidence for editing of human papillomavirus DNA by APOBEC3 in benign and precancerous lesions
-
Vartanian JP, Guetard D, Henry M, Wain-Hobson S (2008) Evidence for editing of human papillomavirus DNA by APOBEC3 in benign and precancerous lesions. Science 320: 230-233.
-
(2008)
Science
, vol.320
, pp. 230-233
-
-
Vartanian, J.P.1
Guetard, D.2
Henry, M.3
Wain-Hobson, S.4
-
29
-
-
2342633240
-
Single-strand specificity of APOBEC3G accounts for minus-strand deamination of the HIV genome
-
Yu Q, Konig R, Pillai S, Chiles K, Kearney M, et al. (2004) Single-strand specificity of APOBEC3G accounts for minus-strand deamination of the HIV genome. Nat Struct Mol Biol 11: 435-442.
-
(2004)
Nat Struct Mol Biol
, vol.11
, pp. 435-442
-
-
Yu, Q.1
Konig, R.2
Pillai, S.3
Chiles, K.4
Kearney, M.5
-
30
-
-
13444282074
-
APOBEC3G cytidine deaminase inhibits retrotransposition of endogenous retroviruses
-
Esnault C, Heidmann O, Delebecque F, Dewannieux M, Ribet D, et al. (2005) APOBEC3G cytidine deaminase inhibits retrotransposition of endogenous retroviruses. Nature 433: 430-433.
-
(2005)
Nature
, vol.433
, pp. 430-433
-
-
Esnault, C.1
Heidmann, O.2
Delebecque, F.3
Dewannieux, M.4
Ribet, D.5
-
31
-
-
42649120310
-
The APOBEC3 cytidine deaminases: An innate defensive network opposing exogenous retroviruses and endogenous retroelements
-
Chiu YL, Greene WC (2008) The APOBEC3 cytidine deaminases: an innate defensive network opposing exogenous retroviruses and endogenous retroelements. Annu Rev Immunol 26: 317-353.
-
(2008)
Annu Rev Immunol
, vol.26
, pp. 317-353
-
-
Chiu, Y.L.1
Greene, W.C.2
-
32
-
-
0031978181
-
Base-calling of automated sequencer traces using phred. II. Error probabilities
-
Ewing B, Green P (1998) Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res 8: 186-194.
-
(1998)
Genome Res
, vol.8
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
33
-
-
0031955518
-
Base-calling of automated sequencer traces using phred. I. Accuracy assessment
-
Ewing B, Hillier L, Wendl MC, Green P (1998) Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 8: 175-185.
-
(1998)
Genome Res
, vol.8
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.2
Wendl, M.C.3
Green, P.4
-
34
-
-
50149083663
-
Hypermutation of an ancient human retrovirus by APOBEC3G
-
Lee YN, Malim MH, Bieniasz PD (2008) Hypermutation of an ancient human retrovirus by APOBEC3G. J Virol 82: 8762-8770.
-
(2008)
J Virol
, vol.82
, pp. 8762-8770
-
-
Lee, Y.N.1
Malim, M.H.2
Bieniasz, P.D.3
-
35
-
-
33750379905
-
Highmolecular-mass APOBEC3G complexes restrict Alu retrotransposition
-
Chiu YL, Witkowska HE, Hall SC, Santiago M, Soros VB, et al. (2006) Highmolecular-mass APOBEC3G complexes restrict Alu retrotransposition. Proc Natl Acad Sci U S A 103: 15588-15593.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 15588-15593
-
-
Chiu, Y.L.1
Witkowska, H.E.2
Hall, S.C.3
Santiago, M.4
Soros, V.B.5
-
36
-
-
0034711082
-
Double-stranded RNA adenosine deaminases ADAR1 and ADAR2 have overlapping specificities
-
Lehmann KA, Bass BL (2000) Double-stranded RNA adenosine deaminases ADAR1 and ADAR2 have overlapping specificities. Biochemistry 39: 12875-12884.
-
(2000)
Biochemistry
, vol.39
, pp. 12875-12884
-
-
Lehmann, K.A.1
Bass, B.L.2
-
37
-
-
0034974268
-
Substrate recognition by ADAR1 and ADAR2
-
Wong SK, Sato S, Lazinski DW (2001) Substrate recognition by ADAR1 and ADAR2. Rna 7: 846-858.
-
(2001)
Rna
, vol.7
, pp. 846-858
-
-
Wong, S.K.1
Sato, S.2
Lazinski, D.W.3
-
38
-
-
16144364414
-
Generation and analysis of 280,000 human expressed sequence tags
-
Hillier LD, Lennon G, Becker M, Bonaldo MF, Chiapelli B, et al. (1996) Generation and analysis of 280,000 human expressed sequence tags. Genome Res 6: 807-828.
-
(1996)
Genome Res
, vol.6
, pp. 807-828
-
-
Hillier, L.D.1
Lennon, G.2
Becker, M.3
Bonaldo, M.F.4
Chiapelli, B.5
-
39
-
-
12344290084
-
Is abundant A-to-I RNA editing primate-specific?
-
Eisenberg E, Nemzer S, Kinar Y, Sorek R, Rechavi G, et al. (2005) Is abundant A-to-I RNA editing primate-specific? Trends Genet 21: 77-81.
-
(2005)
Trends Genet
, vol.21
, pp. 77-81
-
-
Eisenberg, E.1
Nemzer, S.2
Kinar, Y.3
Sorek, R.4
Rechavi, G.5
-
40
-
-
33749256772
-
RNA editing level in the mouse is determined by the genomic repeat repertoire
-
Neeman Y, Levanon EY, Jantsch MF, Eisenberg E (2006) RNA editing level in the mouse is determined by the genomic repeat repertoire. Rna 12: 1802-1809.
-
(2006)
Rna
, vol.12
, pp. 1802-1809
-
-
Neeman, Y.1
Levanon, E.Y.2
Jantsch, M.F.3
Eisenberg, E.4
-
41
-
-
0023666074
-
A developmentally regulated activity that unwinds RNA duplexes
-
Bass BL, Weintraub H (1987) A developmentally regulated activity that unwinds RNA duplexes. Cell 48: 607-613.
-
(1987)
Cell
, vol.48
, pp. 607-613
-
-
Bass, B.L.1
Weintraub, H.2
-
42
-
-
35648954007
-
Inosine-containing dsRNA binds a stress-granule-like complex and downregulates gene expression in trans
-
Scadden AD (2007) Inosine-containing dsRNA binds a stress-granule-like complex and downregulates gene expression in trans. Mol Cell 28: 491-500.
-
(2007)
Mol Cell
, vol.28
, pp. 491-500
-
-
Scadden, A.D.1
-
43
-
-
0024424453
-
An antisense mRNA directs the covalent modification of the transcript encoding fibroblast growth factor in Xenopus oocytes
-
Kimelman D, Kirschner MW (1989) An antisense mRNA directs the covalent modification of the transcript encoding fibroblast growth factor in Xenopus oocytes. Cell 59: 687-696.
-
(1989)
Cell
, vol.59
, pp. 687-696
-
-
Kimelman, D.1
Kirschner, M.W.2
-
44
-
-
0032956724
-
A minor fraction of basic fibroblast growth factor mRNA is deaminated in Xenopus stage VI and matured oocytes
-
Saccomanno L, Bass BL (1999) A minor fraction of basic fibroblast growth factor mRNA is deaminated in Xenopus stage VI and matured oocytes. Rna 5: 39-48.
-
(1999)
Rna
, vol.5
, pp. 39-48
-
-
Saccomanno, L.1
Bass, B.L.2
-
45
-
-
22844451617
-
Fine-scale structural variation of the human genome
-
Tuzun E, Sharp AJ, Bailey JA, Kaul R, Morrison VA, et al. (2005) Fine-scale structural variation of the human genome. Nat Genet 37: 727-732.
-
(2005)
Nat Genet
, vol.37
, pp. 727-732
-
-
Tuzun, E.1
Sharp, A.J.2
Bailey, J.A.3
Kaul, R.4
Morrison, V.A.5
-
46
-
-
69749090013
-
Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding
-
McKernan KJ, Peckham HE, Costa GL, McLaughlin SF, Fu Y, et al. (2009) Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding. Genome Res.
-
(2009)
Genome Res
-
-
McKernan, K.J.1
Peckham, H.E.2
Costa, G.L.3
McLaughlin, S.F.4
Fu, Y.5
-
47
-
-
55549089660
-
Accurate whole human genome sequencing using reversible terminator chemistry
-
Bentley DR, Balasubramanian S, Swerdlow HP, Smith GP, Milton J, et al. (2008) Accurate whole human genome sequencing using reversible terminator chemistry. Nature 456: 53-59.
-
(2008)
Nature
, vol.456
, pp. 53-59
-
-
Bentley, D.R.1
Balasubramanian, S.2
Swerdlow, H.P.3
Smith, G.P.4
Milton, J.5
-
48
-
-
38549092091
-
Database resources of the National Center for Biotechnology Information
-
Wheeler DL, Barrett T, Benson DA, Bryant SH, Canese K, et al. (2008) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 36: D13-21.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Wheeler, D.L.1
Barrett, T.2
Benson, D.A.3
Bryant, S.H.4
Canese, K.5
-
49
-
-
0036079158
-
The human genome browser at UCSC
-
Kent WJ, Sugnet CW, Furey TS, Roskin KM, Pringle TH, et al. (2002) The human genome browser at UCSC. Genome Res 12: 996-1006.
-
(2002)
Genome Res
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
Sugnet, C.W.2
Furey, T.S.3
Roskin, K.M.4
Pringle, T.H.5
-
51
-
-
69949184327
-
-
Boston, MA
-
Zaranek A, Clegg T, Vandewege W, Church G. Free Factories: Unified Infrastructure for Data Intensive Web Services; 2008. Boston, MA. pp 391-404.
-
(2008)
Free Factories: Unified Infrastructure for Data Intensive Web Services
, pp. 391-404
-
-
Zaranek, A.1
Clegg, T.2
Vandewege, W.3
Church, G.4
|