Extensive diversity and inter-genepool introgression in a world-wide collection of indeterminate snap bean accessions

Theoretical and Applied Genetics

Volumn 120, Issue 7, 2010, Pages 1381-1391

  Blair, Matthew W ^a   Chaves, Alejandro ^a   Tofiño, Adriana ^a,b   Calderón, Juan Felipe ^c   Palacio, Juan Diego ^d  

^a INTERNATIONAL CENTER FOR TROPICAL AGRICULTURE CIAT   (Colombia)

^b CENTRO DE INVESTIGACIÓN TIBAITATÁ   (Colombia)

^c INSTITUTO DE INVESTIGACIÓN DE RECURSOS BIOLÓGICOS ALEXANDER VON HUMBOLDT   (Colombia)

^d Instituto Colombiano Agropecuario   (Colombia)

Author keywords

[No Author keywords available]

Indexed keywords

AFLP MARKERS; AMPLIFIED FRAGMENT LENGTH POLYMORPHISMS; COMMON BEANS; DRY BEANS; FLUORESCENT MARKERS; FRESH VEGETABLES; GENETIC DIVERSITY; GRAIN CROPS; GROWTH HABIT; HETEROZYGOSITY; HORTICULTURAL CROPS; LATIN AMERICA; MESOAMERICAN GENEPOOL; MICRO SATELLITE; PHASEOLIN; SIMPLE SEQUENCE REPEATS; SNAP BEANS; SSR MARKERS;

CROPS; FLUORESCENCE; GENETIC ENGINEERING; NUTRITION; POLES; POLYMORPHISM;

PLANTS (BOTANY);

MICROSATELLITE DNA;

ALLELE; AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; FLUORESCENCE; GENE POOL; GENETIC VARIABILITY; GENETICS; GROWTH, DEVELOPMENT AND AGING; HETEROZYGOTE; INBREEDING; INTERNATIONAL COOPERATION; LEGUME; PHYLOGENY;

ALLELES; AMPLIFIED FRAGMENT LENGTH POLYMORPHISM ANALYSIS; FABACEAE; FLUORESCENCE; GENE POOL; GENETIC VARIATION; HETEROZYGOTE; INBREEDING; INTERNATIONALITY; MICROSATELLITE REPEATS; PHYLOGENY;

EID: 77953134714     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-010-1262-4     Document Type: Article

References (34)

1. Afanador L, Haley S (1993) Adoption of a "mini-prep" DNA extraction method for RAPD's marker analysis in common bean Phaseolus vulgaris. Bean Imp Coop 36: 10-11.
2. Beebe S, Rengifo J, Gaitan E, Duque M, Tohme J (2001) Diversity and origin of Andean landraces of common bean. Crop Sci 41: 854-862.
3. Blair M, Hedetale V, McCouch S (2002) Fluorescent-labeled microsatellite panels useful for detecting allelic diversity in cultivated rice (Oryza sativa L.). Theor Appl Genet 105: 449-457.
4. Blair M, Giraldo M, Buendía H, Duque MC, Beebe S (2006) Microsatellite marker diversity in common bean (Phaseolus vulgaris L.). Theor Appl Genet 113: 100-109.
5. Blair MW, Díaz JM, Hidalgo R, Díaz LM, Duque MC (2007) Microsatellite characterization of Andean races of common bean (Phaseolus vulgaris L.). Theor Appl Genet 116: 29-43.
6. Blair MW, Díaz LM, Buendia HF, Duque MC (2010) Genetic diversity, seed size associations and population structure of a core collection of common beans (Phaseolus vulgaris L.) Theor Appl Genet (in press).
7. Brown JWS, McFerson JR, Bliss FA, Hall TC (1982) Genetic divergence among commercial classes of Phaseolus vulgaris in relation to phaseolin pattern. HortScience 17: 752-754.
8. Coburn J, Temnykh S, Paul E, McCouch S (2002) Design and application of microsatellite marker panels for semiautomated genotyping of rice (Oryza sativa L.). Crop Sci 42: 2092-2099.
9. Cunha C, Hintz T, Griffiths P (2004) Genetic diversity of snap bean cultivars determined using randomly amplified polymorphic DNA (RAPD) markers. HortScience 39(3): 481-484.
10. Diaz L, Blair M (2006) Race structure within the Mesoamerican gene pool of common bean (Phaseolus vulgaris L.) as determined by microsatellite markers. Theor Appl Genet 114: 143-154.
11. Durán LA, Blair MW, Giraldo MC, Machiavelli R, Prophete E, Nin JC, Beaver JS (2005) Morphological and molecular characterization of common bean (Phaseolus vulgaris L.) landraces from the Caribbean. Crop Sci 45: 1320-1328.
12. FAOSTAT (2007) http://faostat.fao.org/. Accessed 17 Apr 2009.
13. Gepts P, Osborn K, Rashka K, Bliss F (1986) Phaseolin-protein variability in wild forms and landraces of the common bean (Phasolus vulgaris): evidence for multiple center of domestication. Econ Bot 40: 451-468.
14. Henry G, Janssen W (1992) Snap beans in the developing word: proceedings of an international conference held in Cali, Colombia, p 366.
15. Kaplan L, Kaplan LN (1988) Phaseolus in archeology. In: Gepts P (ed) Genetic resources of Phaseolus Benas. Kluwer, Dordrecht, pp 125-142.
16. Kimura M, Crow JF (1964) The number of alleles that can be maintained in a finite population. Genetics 49: 725-738.
17. Maciel FL, Echeverrigaray S, Sheng Gerald LT, Grazziotin FG (2003) Genetic relationships and diversity among Brazilian cultivars and landraces of common beans (Phaseolus vulgaris L.) revealed by AFLP markers. Gen Res Crop Evol 50: 887-893.
18. Masi P, Spagnoletti P, Donini P (2003) Development and analysis of multiplex microsatellite markers sets in common bean (Phaseolus vulgaris L.). Mol Breeding 11: 303-313.
19. Metais I, Hamon B, Jalouzot R, Peltier D (2002) Structure and level of genetic diversity in various bean types evidenced with microsatellite markers from a genomic enriched library. Theor Appl Genet 104: 1346-1352.
20. Muñoz C, Duque MC, Debouck D, Blair MW (2006) Taxonomy of tepary bean (Phaseolus acutifolius) and wild relatives as determined by amplified fragment length polymorphism (AFLP) markers. Crop Sci 46: 1744-1754.
21. Myers JR, Baggett JR (1999) Improvement of snap beans. In: Singh S (ed) Common bean improvement for the 21st century. Kluwer, Boston.
22. Myers J, Davis J (2002) Molecular polygenetics of snap bean. Department of Horticulture, Oregon State University, Corvallis.
23. Nei M (1973) Analysis of gene diversity in subdivided populations. Proc Nat Acad Sci 70: 3321-3323.
24. Pachico D (1987) The potencial of snap beans as a crop for small farmers in the tropics. El Mejoramiento Genético de la Habichuela en América Latina, CIAT. Cali- Colombia. pp 33-43.
25. Rohlf F (2002) NTSYS pc: numerical taxonomy system. Exeter Publishing, Setauket.
26. SAS Institute (1996) SAS/STAT user guide 6. 11. SAS Institute, Cary.
27. Silbernagel MJ (1986) Snap bean breeding. In: Basset MJ (ed) Breeding vegetable crops. Avi Publ. Co. Inc, West Connecticut, pp 243-282.
28. Singh SP (1989) Patterns of variation in cultivated common bean (Phaseolus vulgaris, Fabaceae). Econ Bot 43: 39-57.
29. Skroch P, Nienhuis J (1995) Qualitative and quantitative characterization of RADP variation among snap bean (Phaseolus vulgaris) genotypes. Theor Appl Genet 91: 1078-1085.
30. Tofiño AP, Ocampo C, Toro O (2004) Determination of genetic diversity of Snap beans Phaesolus vulgaris L. cultivated at secondary centers of domestication using morphological and biochemical descriptors. Ann Rep Bean Improv Coop 47: 169-170.
31. Tohme J, Gonzales D, Beebe S, Duque MC (1996) AFLP analysis of gene pools of a wild bean core collection. Crop Sci 36: 1375-1384.
32. Voysest O (2000) Mejoramiento genetico de frijol (Phaseolus vulgaris L.) Legado de las variedades de America Latina 1930-1999. CIAT, Cali-Colombia.
33. Yeh F, Yang R, Boyle T, Ye Z, Mao J (1997) POPGENE, the user-friendly shareware for population genetics analysis version 1. 31. Molecular Biology and Biotechnology Centre, University of Alberta, Alberta.
34. Zhang X, Blair MW, Wang S (2008) Genetic diversity of Chinese common bean (Phaseolus vulgaris L.) landraces assessed with simple sequence repeat markers. Theor Appl Genet 117: 629-640.