Genetic diversity and phylogenetic relationships of two closely related northeast China Vicia species revealed with RAPD and ISSR markers

Biochemical Genetics

Volumn 48, Issue 5-6, 2010, Pages 385-401

  Han, Ying ^a   Wang, Hao You ^b  

^a SOUTHWEST UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

^b HARBIN NORMAL UNIVERSITY   (China)

Author keywords

Genetic diversity; ISSR; Phylogenetic relationships; RAPD; Vicia cracca; Vicia ramuliflora; Vicia unijuga

Indexed keywords

PLANT DNA;

ARTICLE; BEAN; CHINA; CONTROLLED STUDY; GENE FLOW; GENETIC ANALYSIS; GENETIC DISTANCE; GENETIC MARKER; GENETIC POLYMORPHISM; GENETIC VARIABILITY; INTER SIMPLE SEQUENCE REPEAT; INTERMETHOD COMPARISON; MOLECULAR PHYLOGENY; NONHUMAN; PHYLOGENETIC TREE; PLANT GENETICS; RANDOM AMPLIFIED POLYMORPHIC DNA; SPECIES DIFFERENTIATION; SPECIES DISTRIBUTION; SPECIES DIVERSITY; VICIA CRACCA; VICIA RAMULIFLORA; VICIA UNIJUGA;

ANALYSIS OF VARIANCE; CHINA; CLUSTER ANALYSIS; GENETIC VARIATION; MICROSATELLITE REPEATS; PHYLOGENY; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; VICIA;

VICIA; VICIA CRACCA; VICIA UNIJUGA;

EID: 77953134567     PISSN: 00062928     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10528-009-9320-9     Document Type: Article

References (24)

1. Ajibade SR, Weeden NF, Chite SM (2000) Inter-simple sequence repeat analysis of genetic relationships in the genus Vigna. Euphytica 111:47-55
2. Bussell JD (1999) The distribution of random amplified polymorphic DNA (RAPD) diversity amongst populations of Isotoma petraea (Lobeliaceae). Mol Ecol 8:775-789
3. Excoffier L (1993) Analysis of molecular variance (AMOVA) version 1.55. Genetics and Biometry Laboratory, University of Geneva, Switzerland
4. Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479-491
5. Gimenes MA, Lopes CR, Galgaro ML, Valls JFM, Kochert G (2000) Genetic variation and phylogenetic relationships based on RAPD analysis in section Caulorrhizae, genus Arachis (Leguminosae). Euphytica 116:187-195
6. Hamrick JL, Godt MJW (1989) Allozyme diversity in plant species. In: Brown AHD, Clegg MT, Kahler AL, Weir BS (eds) Plant population genetics, breeding, and genetic resources. Sinauer, Sunderland, MA, pp 43-63
7. Hogbin PM, Peakall R (1999) Evaluation of the contribution of genetic research to the management of the endangered plant Zieria prostrata. Conserv Biol 13:514-522
8. Iruela M, Rubio J, Cubero JI, Gil J, Millán T (2002) Phylogenetic analysis in the genus Cicer and cultivated chickpea using RAPD and ISSR markers. Theor Appl Genet 104:643-651
9. Levin DA (1977) The organization of genetic variability in Phlox drummondii. Evolution 31:477-494
10. Lewontin RC (1972) Apportionment of human diversity. Evol Biol 6:381-398
11. Li R, Liu X, Liu M (1996) Study on biosystematics of Vicia L. (Fabaceae) in northeast China. China Agricultural Science and Technology Press, Beijing
12. Loveless MD, Hamrick JL (1984) Ecological determinants of genetic structure in plant populations. Annu Rev Ecol Syst 15:65-95
13. Mattioni C, Casasoli M, Gonzalez M, Ipinza R, Villani F (2002) Comparison of ISSR and RAPD markers to characterize three Chilean Nothofagus species. Theo Appl Genet 104:1064-1070
14. Nei M (1973) Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA 70:3321-3323
15. Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89:583-590
16. Potokina E, Tomooka N, Vaughan DA, Alexandrova T, Xu RQ (1999) Phylogeny of Vicia subgenus Vicia (Fabaceae) based on analysis of RAPDs and RFLP of PCR-amplified chloroplast genes. Genet Resour Crop Evol 46:149-161
17. Rohlf FJ (1993) NTsys-pc: numerical taxonomy and multivariate analysis system. Applied Biostatistics Inc., New York
18. Rohlf PJ (1997) NTsys-pc: numerical taxonomy and multivariate analysis system, Version 2.1. Exeter Software, Setauket, New York, USA
19. Slatkin M, Barton NH (1989) A comparison of three indirect methods for estimating the average level of gene flow. Evolution 43:1349-1368
20. Sneath PHA, Sokal RR (1973) Numerical taxonomy: the principles and practice of numerical classification. W. H. Freeman, San Francisco
21. Williams MJ (1993) Planting date and preplant tillage effects on emergence and survival of rhizoma perennial peanut. Crop Sci 33:132-163
22. Wright S (1978) Evolution and the genetics of populations, vol. 4: variability within and among natural populations. University of Chicago Press, Chicago, IL
23. Yeh FC, Yang RC, Boyle TBJ, Ye ZH, Mao JX (1999) PopGene Version 3.2: the user-friendly shareware for population genetic analysis. Molecular Biology and Biotechnology Center, University of Albert, Edmonton
24. Zhang FM, Ge S (2002) Data analysis in population genetics. I. Analysis of RAPD data with AMOVA. Biodivers Sci 10:438-444