Cloning of complete genomes of large dsDNA viruses by in vitro transposition of an F factor containing transposon

Journal of Virological Methods

Volumn 167, Issue 1, 2010, Pages 95-99

  Wang, Yongjie ^a   Stojiljković, Nina ^a   Jehle, Johannes A ^a  

^a Dienstleistungszentrum Landlicher Raum DLR   (Germany)

Author keywords

Bacterial artificial chromosome; Mini F replicon; Transfection; Transposon Tn5; Whole genome cloning

Indexed keywords

F FACTOR;

ANIMAL CELL; ARTICLE; AUTOGRAPHA CALIFORNICA; BACTERIAL ARTIFICIAL CHROMOSOME; BACULOVIRUS; CONTROLLED STUDY; DNA TRANSPOSITION; DNA VIRUS; ESCHERICHIA COLI; GENE INSERTION; GENE TARGETING; GENETIC TRANSFECTION; IN VITRO STUDY; INSECT CELL; MOLECULAR CLONING; NONHUMAN; OPEN READING FRAME; PLASMID; POLYHEDROSIS VIRUS; PRIORITY JOURNAL; REPLICON; SHUTTLE VECTOR; TRANSPOSON; VIRUS GENOME;

ANIMALS; CELL LINE; CHLORAMPHENICOL RESISTANCE; CLONING, MOLECULAR; DNA; DNA TRANSPOSABLE ELEMENTS; DNA VIRUSES; DNA, CIRCULAR; ESCHERICHIA COLI; F FACTOR; GENETIC VECTORS; GENOME, VIRAL; SPODOPTERA;

AUTOGRAPHA CALIFORNICA MNPV; AUTOGRAPHA CALIFORNICA NUCLEOPOLYHEDROVIRUS; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 77953027213     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2009.11.026     Document Type: Article

References (16)

1. Ayres M.D., Howard S.C., Kuzio J., Lopez-Ferber M., Possee R.D. The complete DNA sequence of Autographa californica nuclear polyhedrosis virus. Virology 1994, 202:586-605.
2. Braunagel S.C., Elton D.M., Ma H., Summers M.D. Identification and analysis of an Autographa californica nuclear polyhedrosis virus structural protein of the occlusion-derived virus envelope: ODV-E56. Virology 1996, 217:97-110.
3. Cheung V.G., Nelson S.F. Whole genome amplification using a degenerate oligonucleotide primer allows hundreds of genotypes to be performed on less than one nanogram of genomic DNA. Proc. Natl. Acad. Sci. U.S.A. 1996, 93:14676-14679.
4. Dean F.B., Hosono S., Fang L., Wu X., Faruqi A.F., Bray-Ward P., Sun Z., Zong Q., Du Y., Du J., Driscoll M., Song W., Kingsmore S.F., Egholm M., Lasken R.S. Comprehensive human genome amplification using multiple displacement amplification. Proc. Natl. Acad. Sci. U.S.A. 2002, 99:5261-5266.
5. Goryshin I.Y., Reznikoff W.S. Tn5 in vitro transposition. J. Biol. Chem. 1998, 273:7367-7374.
6. Herniou E.A., Olszewski J.A., Cory J.S., O'Reilly D.R. The genome sequence and evolution of baculoviruses. Annu. Rev. Entomol. 2003, 48:211-234.
7. Hilton S., Kemp E., Keane G., Winstanley D. A bacmid approach to the genetic manipulation of granuloviruses. J. Virol. Methods 2008, 152:56-62.
8. Jehle J.A., Lange M., Wang H., Hu Z., Wang Y., Hauschild R. Molecular identification and phylogenetic analysis of baculoviruses from Lepidoptera. Virology 2006, 346:180-193.
9. Luckow V.A., Lee S.C., Barry G.F., Olins P.O. Efficient generation of infectious recombinant baculoviruses by site-specific transposon-mediated insertion of foreign genes into a baculovirus genome propagated in Escherichia coli. J. Virol. 1993, 67:4566-4579.
10. Paunio T., Reima I., Syvanen A.C. Preimplantation diagnosis by whole-genome amplification, PCR amplification, and solid-phase minisequencing of blastomere DNA. Clin. Chem. 1996, 42:1382-1390.
11. Schumacher D., Tischer B.K., Fuchs W., Osterrieder N. Reconstitution of Marek's disease virus serotype 1 (MDV-1) from DNA cloned as a bacterial artificial chromosome and characterization of a glycoprotein B-negative MDV-1 mutant. J. Virol. 2000, 74:11088-11098.
12. Telenius H., Carter N.P., Bebb C.E., Nordenskjold M., Ponder B.A., Tunnacliffe A. Degenerate oligonucleotide-primed PCR: general amplification of target DNA by a single degenerate primer. Genomics 1992, 13:718-725.
13. Theilmann D.A., Chantler J.K., Stweart S., Flipsen H.T., Vlak J.M., Crook N.E. Characterization of a highly conserved baculovirus structural protein that is specific for occlusion-derived virions. Virology 1996, 218:148-158.
14. Wang H., Deng F., Pijlman G.P., Chen X., Sun X., Vlak J.M., Hu Z. Cloning of biologically active genomes from a Helicoverpa armigera single-nucleocapsid nucleopolyhedrovirus isolate by using a bacterial artificial chromosome. Virus Res. 2003, 97:57-63.
15. Wang Y., Kleespies R.G., Ramle M.B., Jehle J.A. Sequencing of the large dsDNA genome of Oryctes rhinoceros nudivirus using multiple displacement amplification of nanogram amounts of virus DNA. J. Virol. Methods 2008, 152:106-108.
16. Zhang L., Cui X., Schmitt K., Hubert R., Navidi W., Arnheim N. Whole genome amplification from a single cell: implications for genetic analysis. Proc. Natl. Acad. Sci. U.S.A. 1992, 89:5847-5851.