Diffusion of the reaction boundary of rapidly interacting macromolecules in sedimentation velocity

Biophysical Journal

Volumn 98, Issue 11, 2010, Pages 2741-2751

  Schuck, Peter ^a  

^a NATIONAL INSTITUTE OF BIOMEDICAL IMAGING AND BIOENGINEERING   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 77953002874     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1016/j.bpj.2010.03.004     Document Type: Article

References (29)

1. Arisaka, F. 1999. Applications and future perspectives of analytical ultracentrifugation. Tanpakushitsu Kakusan Koso. 44:82-91.
2. Cole, J. L., J. W. Lary, T. M. Laue. 2008. Analytical, ultracentrifugation: sedimentation velocity and sedimentation equilibrium. Methods Cell Biol. 84:143-179.
3. Howlett, G. J., A. P. Minton, and G. Rivas. 2006. Analytical ultracentrifugation for the study of protein association and assembly. Curr. Opin. Chem. Biol. 10:430-436. (Pubitemid 44375070)
4. Lebowitz, J., M. S. Lewis, and P. Schuck. 2002. Modern analytical ultracentrifugation in protein science: a tutorial review. Protein Sci. 11:2067-2079. (Pubitemid 34919611)
5. Schuck, P. 2007. Sedimentation velocity in the study of reversible multiprotein complexes. In Protein Interactions: Biophysical Approaches for the Study of Complex Reversible Systems. P. Schuck, editor. Springer, New York.
6. Urbanke, C., B. Ziegler, and K. Stieglitz. 1980. Complete evaluation, of sedimentation velocity experiments in the analytical ultracentrifuge. Fresenius Z. Anal. Chem. 301:139-140.
7. Schuck,P.1998. Sedimentationanalysisofnoninteractingandselfassociatingsolutesusingnumericalsol utions-theLammequation.Biophys.J.75:1503-1512.(Pubitemid28397620)
8. Stafford, W. F., and P. J. Sherwood. 2004. Analysis of heterologous interacting systems by sedimentation, velocity: curve fitting algorithms for estimation of sedimentation coefficients, equilibrium and kinetic constants. Biophys. Chem. 108:231-243.
9. Dam, J., C. A. Velikovsky, P. Schuck. 2005. Sedimentation velocity analysis of heterogeneous protein-protein interactions: Lamm equation modeling and sedimentation coefficient distributions c(s). Biophys. J. 89:619-634. (Pubitemid 41098314)
10. Schuck,P.2000.Size- distributionanalysisofmacromoleculesbysedimentationvelocityultracentrifugationa ndLammequationmodeling.Biophys.J.78:1606-1619.(Pubitemid30141584)
11. Brown, P. H., and P. Schuck. 2006. Macromolecular size-and-shape distributions by sedimentation velocity analytical ultracentrifugation. Biophys. J. 90:4651-4661.
12. Balbo, A., K. H. Minor, P. Schuck. 2005. Studying multiprotein complexes by multisignal sedimentation velocity analytical ultracentrifugation. Proc. Natl. Acad. Sci. USA, 102:81-86. (Pubitemid 40094432)
13. Gilbert, G. A., and R. C. Jenkins. 1956. Boundary problems in the sedimentation, and electrophoresis of complex systems in rapid reversible equilibrium. Nature. 177:853-854.
14. Fujita, H. 1975. Foundations of Ultracentrifugal Analysis. John Wiley & Sons, New York.
15. Schuck, P. 2010. Sedimentation patterns of rapidly reversible protein interactions. Biophys. J. 98:2005-2013.
16. Dam, J., and P. Schuck. 2005. Sedimentation velocity analysis of heterogeneous protein-protein interactions: sedimentation coefficient distributions c(s) and asymptotic boundary profiles from Gilbert-Jenkins theory. Biophys. J. 89:651-666. (Pubitemid 41098316)
17. Schuck, P. 2010. https://sedfitsedph.at.nibib.nih.gov/software/defau.l. aspx.
18. Krauss, G., A. Pingoud, G. Maas. 1975. Equivalent and non-equivalent binding sites for +RNA on aminoacyl-tRNA synthetases. Eur. J. Biochem. 55:517-529.
19. Urbanke, C., G. Witte, and U. Curth. 2005. A sedimentation, velocity method in the analytical ultracentrifuge for the study of protein-protein interactions. In Protein-Ligand Interactions: Methods and Applications. G. U. Nienhaus, editor. Humana Press, Totowa, New Jersey.
20. Schuck, P. https://sedfitsedphat.nibib.nih.gov/tools/ Reaction%20Boundary%20Movies/Forms/Alltems.aspx
21. Schuck,P.,M.A.Perugini,D.Schubert.2002.Size- distributionanalysisofproteinsbyanalyticalultracentrifugation: strategiesandapplication-modelsystems.Biophys.J.82;1096-1111.(Pubitemid34111246)
22. Schuck, P. 2009. On computational approaches for size-and-shape distributions from, sedimentation, velocity analytical ultracentrifugation. Eur. Biophys. J. 10.1007/s00249-009-0545-547
23. Brookes, E., W. Cao, and B. Demeler. 2009. A two-dimensional spectrum analysis for sedimentation, velocity experiments of mixtures with heterogeneity in molecular weight and shape. Eur. Biophys. J. 39: 405-4-14.
24. Brown, P., and P. Schuck. 2007. A new adaptive grid-size algorithm for the simulation of sedimentation, velocity profiles in analytical ultracentrifugation. Comput. Phys. Commun. 178:105-120. (Pubitemid 350266598)
25. Schuck, P. 2010. http://www.analyticalultracent.rifugation.com/refer- ences.htm
26. Schachman, H. K. 1959. Ultracentrifugation in Biochemistry. Academic Press, New York.
27. Schuck, P. 2003. On the analysis of protein self-association by sedimentation velocity analytical ultracentrifugation. Anal. Biochem. 320: 104-124. (Pubitemid 36937072)
28. Brown, P. H., A. Balbo, and P. Schuck. 2007. Using prior knowledge in the determination of macromolecular size-distributions by analytical, ultracentrifugation. Biomacromolecules. 8:2011-2024.
29. Gilbert, L. M., and G. A. Gilbert. 1978. Molecular transport of reversibly reacting systems: asymptotic boundary profiles in sedimentation, electrophoresis, and chromatography. Methods Enzymol. 48:195-212.