HNCO-based measurement of one-bond amide 15N-1H couplings with optimized precision

Journal of Biomolecular NMR

Volumn 46, Issue 2, 2010, Pages 175-189

  Arbogast, Luke ^a   Majumdar, Ananya ^a   Tolman, Joel R ^a  

^a JOHNS HOPKINS UNIVERSITY   (United States)

Author keywords

GB1; Heme oxygenase; Residual dipolar couplings; TROSY

Indexed keywords

CARBON 13; NITROGEN 15; AMIDE; G SUBSTRATE; G-SUBSTRATE; HEME OXYGENASE; NERVE PROTEIN;

ACCURACY; ARTICLE; CHEMICAL BOND; CONTROLLED STUDY; NONHUMAN; PRIORITY JOURNAL; SPECTROSCOPY; TIME; TRANSVERSE RELAXATION OPTIMIZED SPECTROSCOPY; CHEMISTRY; ENZYMOLOGY; METHODOLOGY; NEISSERIA MENINGITIDIS; NUCLEAR MAGNETIC RESONANCE; PROTEIN TERTIARY STRUCTURE;

AMIDES; HEME OXYGENASE (DECYCLIZING); NEISSERIA MENINGITIDIS; NERVE TISSUE PROTEINS; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN STRUCTURE, TERTIARY;

EID: 77952974307     PISSN: 09252738     EISSN: 15735001     Source Type: Journal    
DOI: 10.1007/s10858-009-9391-2     Document Type: Article

References (34)

1. Bax A, Kontaxis G, Tjandra N (2001) Dipolar couplings in macromolecular structure determination. Nucl Magn Reson Biol Macromol Pt B 339:127-174 (Pubitemid 32666560)
2. Blackledge M (2005) Recent progress in the study of biomolecular structure and dynamics in solution from residual dipolar couplings. Prog Nucl Magn Reson Spectrosc 46(1):23-61 (Pubitemid 40357061)
3. Briggman KB, Tolman JR (2003) De novo determination of bond orientations and order parameters from residual dipolar couplings with high accuracy. J Am Chem Soc 125:10164-10165 (Pubitemid 37022214)
4. Cavanagh J, Rance M (1990) Sensitivity improvement in isotropic mixing (TOCSY) experiments. J Magn Reson 88(1):72-85
5. de Alba E, Tjandra N (2006) On the accurate measurement of amide one-bond 15 N-1H couplings in proteins: effects of crosscorrelated relaxation, selective pulses and dynamic frequency shifts. J Mag Res 183(1):160-165 (Pubitemid 44692528)
6. de Alba E, Suzuki M, Tjandra N (2001) Simple multidimensional NMR experiments to obtain different types of one-bond dipolar couplings simultaneously. J Biomol NMR 19(1):63-67 (Pubitemid 32162241)
7. Delaglio F, Grzesiek S, Vuister GW, Zhu G, Pfeifer J, Bax A (1995) NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J Biomol NMR 6(3):277-293
8. Emsley L, Bodenhausen G (1990) Gaussian pulse cascades: new analytical functions for rectangular selective inversion and in-phase excitation in NMR. Chem Phys Lett 165(6):469-476
9. Garrett DS, Powers R, Gronenborn AM, Clore GM (1991) A common sense approach to peak picking in two-, three-, and fourdimensional spectra using automatic computer analysis of contour diagrams. J Magn Reson 95(1):214-220
10. Goddard T, Kneller D (2007) SPARKY 3. University of California, San Francisco
11. Grzesiek S, Bax A (1992) Improved 3D triple-resonance NMR techniques applied to a 31 kDa protein. J Magn Reson 96(2): 432-440
12. Hu K, Doucleff M, Clore GM (2009) Using multiple quantum coherence to increase the 15 N resolution in a three-dimensional TROSY HNCO experiment for accurate PRE and RDC measurements. J Magn Reson 200(2):173-177
13. Kay LE, Xu GY, Yamazaki T (1994) Enhanced-sensitivity tripleresonance spectroscopy with minimal H2O saturation. J Mag Res 109(1):129-133
14. Kontaxis G, Clore GM, Bax A (2000) Evaluation of cross-correlation effects and measurement of one-bond couplings in proteins with short transverse relaxation times. J Mag Res 143(1):184-196
15. Lange OF, Lakomek NA, Fares C, Schroder GF, Walter KF, Becker S, Meiler J, Grubmuller H, Griesinger C, de Groot BL (2008) Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution. Science 320(5882): 1471-1475 (Pubitemid 351929422)
16. Loria JP, Rance M, Palmer AG (1999) Transverse-relaxationoptimized (TROSY) gradient-enhanced triple-resonance NMR spectroscopy. J Mag Res 141(1):180-184 (Pubitemid 129608908)
17. Marley J, Lu M, Bracken C (2001) A method for efficient isotopic labeling of recombinant proteins. J Biomol NMR 20(1):71-75 (Pubitemid 32519656)
18. Muhandiram DR, Kay LE (1994) Gradient-enhanced triple-resonance three-dimensional NMR experiments with improved sensitivity. J Mag Res 103(3):203-216
19. Ottiger M, Delaglio F, Bax A (1998) Measurement of J and dipolar couplings from simplified two-dimensional NMR spectra. J Mag Res 131(2):373-378 (Pubitemid 128450579)
20. Palmer AG, Cavanagh J, Wright PE, Rance M (1991) Sensitivity improvement in proton-detected two-dimensional heteronuclear correlation NMR spectroscopy. J Magn Reson 93(1):151-170
21. Pellecchia M, Pang Y, Wang L, Kurochkin AV, Kumar A, Zuiderweg ERP (1999) Quantitative measurement of cross-correlations between 15 N and 13CO chemical shift anisotropy relaxation mechanisms by multiple quantum NMR. J Am Chem Soc 121(39):9165-9170
22. Pervushin K, Wider G, Wüthrich K (1998) Single transition-to-single transition polarization transfer (ST2-PT) in [15 N, 1H]-TROSY. J Biomol NMR 12(2):345-348 (Pubitemid 128511298)
23. Rance M, Loria JP, Palmer AG (1999) Sensitivity improvement of transverse relaxation-optimized spectroscopy. J Mag Res 136(1): 92-101 (Pubitemid 129607251)
24. Ruan K, Briggman K, Tolman J (2008) De novo determination of internuclear vector orientations from residual dipolar couplings measured in three independent alignment media. J Biomol NMR 41(2):61-76
25. Salmon L, Bouvignies G, Markwick P, Lakomek N, Showalter S, Li DW, Walter K, Griesinger C, Bruschweiler R, Blackledge M (2009) Protein conformational flexibility from structure-free analysis of NMR dipolar couplings: quantitative and absolute determination of backbone motion in ubiquitin. Angew Chem Int Ed Engl 48(23):4154-4157
26. Salzmann M, Pervushin K, Wider G, Senn H, Wuthrich K (1998) TROSY in triple-resonance experiments: new perspectives for sequential NMR assignment of large proteins. Proc Natl Acad Sci USA 95(23):13585-13590 (Pubitemid 28523015)
27. Tjandra N, Bax A (1997) Measurement of dipolar contributions to 1JCH splittings from magnetic-field dependence of J modulation in two-dimensional NMR spectra. J Mag Res 124(2):512-515 (Pubitemid 127451822)
28. Tolman JR, Ruan K (2006) NMR residual dipolar couplings as probes of biomolecular dynamics. Chem Rev 106:1720-1736 (Pubitemid 43792777)
29. Vijayan V, Zweckstetter M (2005) Simultaneous measurement of protein one-bond residual dipolar couplings without increased resonance overlap. J Mag Res 174(2):245-253 (Pubitemid 40557709)
30. Yang D, Kay L (1999a) Improved lineshape and sensitivity in the HNCO-family of triple resonance experiments. J Biomol NMR 14(3):273-276 (Pubitemid 29396485)
31. Yang D, Kay LE (1999b) Improved 1HN-detected triple resonance TROSY-based experiments. J Biomol NMR 13(1):3-10 (Pubitemid 29089234)
32. Yang D, Venters RA, Mueller GA, Choy WY, Kay LE (1999) TROSY-based HNCO pulse sequences for the measurement of 1HN-15 N, 15 N-13CO, 1HN-13CO, 13CO-13Ca and 1HN- 13Ca dipolar couplings in 15 N, 13C, 2H-labeled proteins. J Biomol NMR 14(4):333-343 (Pubitemid 29473521)
33. Yao L, Ying J, Bax A (2009) Improved accuracy of 15 N-1H scalar and residual dipolar couplings from gradient-enhanced IPAP-HSQC experiments on protonated proteins. J Biomol NMR 43(3): 161-170
34. Zhu W, Wilks A, Stojiljkovic I (2000) Degradation of heme in gramnegative bacteria: the product of the hemO gene of neisseriae is a heme oxygenase. J Bacteriol 182(23):6783-6790 (Pubitemid 32249262)