RNA isolation from mammalian cells using porous polymer monoliths: An approach for high-throughput automation

Analytical Chemistry

Volumn 82, Issue 11, 2010, Pages 4344-4356

  Chatterjee, Anirban ^a,b   Mirer, Paul L ^b   Zaldivar Santamaria, Elvira ^b   Klapperich, Catherine ^a   Sharon, Andre ^a,b   Sauer Budge, Alexis F ^b  

^a BOSTON UNIVERSITY   (United States)

^b Fraunhofer USA Inc   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BINDING SURFACE; BIOLOGIC DRUGS; CANCER RESEARCH; CELL LYSIS; CELL NUMBER; CELL POPULATIONS; EUKARYOTIC CELLS; EXTRACTION COLUMNS; EXTRACTION EFFICIENCIES; EXTRACTION PROCESS; GENE EXPRESSION ANALYSIS; HIGH YIELD; HIGH-THROUGHPUT; HIGH-THROUGHPUT AUTOMATION; IN-CELL; INDIRECT COSTS; ISOLATION TECHNIQUES; LIFE-SCIENCES; MAMMALIAN CELLS; POROUS POLYMER MONOLITHS; REPRODUCIBILITIES; RIBONUCLEIC ACID; RNA ISOLATION; SAMPLE HANDLING; SAMPLE STORAGE; SMALL MOLECULES; SOLID-PHASE EXTRACTION; STEM CELL RESEARCH; WORKFLOW INTEGRATION;

ANIMAL CELL CULTURE; CELL CULTURE; CELL PROLIFERATION; COLUMN CHROMATOGRAPHY; COST REDUCTION; GENE EXPRESSION; ION CHROMATOGRAPHY; MAMMALS; PULSE MODULATION; PULSE POSITION MODULATION; RESEARCH; RNA; STEM CELLS; THROUGHPUT;

EXTRACTION;

BUFFER; POLYMER; RNA;

AIR; ANIMAL; ARTICLE; AUTOMATION; CELL LINE; CHEMISTRY; DOG; ECONOMICS; INSTRUMENTATION; ISOLATION AND PURIFICATION; METHODOLOGY; POROSITY; PRESSURE; REPRODUCIBILITY; SOLID PHASE EXTRACTION;

AIR; ANIMALS; AUTOMATION; BUFFERS; CELL LINE; DOGS; POLYMERS; POROSITY; PRESSURE; REPRODUCIBILITY OF RESULTS; RNA; SOLID PHASE EXTRACTION;

EID: 77952968826     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac100063f     Document Type: Article

References (46)

1. Toft, J. H., Lian, I. A., Tarca, A. L., Erez, O., Espinoza, J., Eide, I. P., Bjorge, L., Draghici, S., Romero, R., and Austgulen, R. J. Matern. Fetal Neonatal Med. 2008, 21, 267-273
2. An, C., Saha, S., Jenkins, J. N., Scheffler, B. E., Wilkins, T. A., and Stelly, D. M. Mol. Genet. Genomics 2007, 278, 539-553
3. Alvarez, H., Corvalan, A., Roa, J. C., Argani, P., Murillo, F., Edwards, J., Beaty, R., Feldmann, G., Hong, S. M., Mullendore, M., Roa, I., Ibanez, L., Pimentel, F., Diaz, A., Riggins, G. J., and Maitra, A. Clin. Cancer Res. 2008, 14, 2631-2638
4. Hu, Y. F., Kaplow, J., and He, Y. Curr. Mol. Med. 2005, 5, 29-38
5. Bilello, J. A. Curr. Mol. Med. 2005, 5, 39-52
6. Bremnes, R. M., Sirera, R., and Camps, C. Lung Cancer 2005, 49, 1-12
7. Myler, P. J. Adv. Exp. Med. Biol. 2008, 625, 133-140
8. Mandruzzato, S. Adv. Exp. Med. Biol. 2007, 593, 12-18
9. Cole, J. R., Wang, Q., Cardenas, E., Fish, J., Chai, B., Farris, R. J., Kulam-Syed-Mohideen, A. S., McGarrell, D. M., Marsh, T., Garrity, G. M., and Tiedje, J. M. Nucleic Acids Res. 2009, 37, D141-145
10. Kleinman, M. E., Yamada, K., Takeda, A., Chandrasekaran, V., Nozaki, M., Baffi, J. Z., Albuquerque, R. J., Yamasaki, S., Itaya, M., Pan, Y., Appukuttan, B., Gibbs, D., Yang, Z., Kariko, K., Ambati, B. K., Wilgus, T. A., DiPietro, L. A., Sakurai, E., Zhang, K., Smith, J. R., Taylor, E. W., and Ambati, J. Nature 2008, 452, 591-597
11. Kim, K. S., Kim, J. S., Lee, M. R., Jeong, H. S., and Kim, J. FEBS J. 2009, 276, 2140-2149
12. Dineva, M. A., MahiLum-Tapay, L., and Lee, H. Analyst 2007, 132, 1193-1199
13. Skrypina, N. A., Timofeeva, A. V., Khaspekov, G. L., Savochkina, L. P., and Beabealashvilli, R. J. Biotechnol. 2003, 105, 1-9
14. Mutiu, A. I. and Brandl, C. J. J. Biomol. Tech. 2005, 16, 316-317
15. Guarino, H., Goyal, S. M., and Murtaugh, M. P. New Microbiol. 1997, 20, 319-324
16. Boom, R., Sol, C. J., Salimans, M. M., Jansen, C. L., Wertheim-van Dillen, P. M., and van der Noordaa, J. J. Clin. Microbiol. 1990, 28, 495-503
17. Chen, J., Lozach, J., Garcia, E. W., Barnes, B., Luo, S., Mikoulitch, I., Zhou, L., Schroth, G., and Fan, J. B. Nucleic Acids Res. 2008, 36, e87
18. Rosenthal, L. J. Nucleic Acids Res. 1976, 3, 661-676
19. Robins, H. I. and McNutt, W. S. Anal. Biochem. 1974, 57, 636-639
20. Witek, M. A., Hupert, M. L., Park, D. S., Fears, K., Murphy, M. C., and Soper, S. A. Anal. Chem. 2008, 80, 3483-3491
21. Ullmann, S., Hage, T., Draheim, R., Egerland, U., Oelmuller, U., Brune, K., and Pahl, A. J. Biomol. Screen. 2004, 9, 95-102
22. Hilbert, H., Lauber, J., Lubenow, H., and Dusterhoft, A. DNA Seq. 2000, 11, 193-197
23. Anslinger, K., Bayer, B., Rolf, B., Keil, W., and Eisenmenger, W. Leg. Med. 2005, 7, 164-168
24. Mitsunaga, S., Fujimura, K., Matsumoto, C., Shiozawa, R., Hirakawa, S., Nakajima, K., Tadokoro, K., and Juji, T. Transfusion 2002, 42, 100-106
25. Tian, H., Huhmer, A. F., and Landers, J. P. Anal. Biochem. 2000, 283, 175-191
26. Peirson, S. N. and Butler, J. N. Methods Mol. Biol. 2007, 362, 315-327
27. Hagan, K. A., Bienvenue, J. M., Moskaluk, C. A., and Landers, J. P. Anal. Chem. 2008, 80, 8453-8460
28. Satterfield, B. C., Stern, S., Caplan, M. R., Hukari, K. W., and West, J. A. Anal. Chem. 2007, 79, 6230-6235
29. Lee, M., Huh, N., and Kim, J. H. Anal. Biochem. 2008, 381, 160-162
30. Tan, W., Wang, K., He, X., Zhao, X. J., Drake, T., Wang, L., and Bagwe, R. P. Med. Res. Rev. 2004, 24, 621-638
31. Jacobsen, N., Nielsen, P. S., Jeffares, D. C., Eriksen, J., Ohlsson, H., Arctander, P., and Kauppinen, S. Nucleic Acids Res. 2004, 32, e64
32. Kulinski, M. D., Mahalanabis, M., Gillers, S., Zhang, J. Y., Singh, S., and Klapperich, C. M. Biomed. Microdevices 2009, 11, 671-678
33. Bhattacharyya, A. and Klapperich, C. M. Anal. Chem. 2006, 78, 788-792
34. Sauer-Budge, A., Mirer, P., Chatterjee, A., Klapperich, C., Chargin, D., and Sharon, A. Lab Chip 2009, 9, 2803-2810
35. Mahalanabis, M., Al-Muayad, H., Kulinski, M. D., Altman, D., and Klapperich, C. M. Lab Chip 2009, 9, 2811-2817
36. Bhattacharyya, A. and Klapperich, C. M. Sens. Actuators, B: Chem. 2008, 129, 693-698
37. Wen, J., Guillo, C., Ferrance, J. P., and Landers, J. P. Anal. Chem. 2006, 78, 1673-1681
38. Wen, J., Guillo, C., Ferrance, J. P., and Landers, J. P. Anal. Chem. 2007, 79, 6135-6142
39. Wu, Q., Bienvenue, J. M., Hassan, B. J., Kwok, Y. C., Giordano, B. C., Norris, P. M., Landers, J. P., and Ferrance, J. P. Anal. Chem. 2006, 78, 5704-5710
40. Diaz-Quijada, G. A., Peytavi, R., Nantel, A., Roy, E., Bergeron, M. G., Dumoulin, M. M., and Veres, T. Lab Chip 2007, 7, 856-862
41. Nikolov, I. D. and Ivanov, C. D. Appl. Opt. 2000, 39, 2067-2070
42. Bhattacharyya, A. and Klapperich, C. M. In 31st Annual EMBS Conference, Proceedings of the IEEE, Minneapolis, MN, September 2-6, 2009.
43. Cho, M. J., Thompson, D. P., Cramer, C. T., Vidmar, T. J., and Scieszka, J. F. Pharm. Res. 1989, 6, 71-77
44. Hagan, K. A., Meier, W. L., Ferrance, J. P., and Landers, J. P. Anal. Chem. 2009, 81, 5249-5256
45. Easley, C. J., Karlinsey, J. M., Bienvenue, J. M., Legendre, L. A., Roper, M. G., Feldman, S. H., Hughes, M. A., Hewlett, E. L., Merkel, T. J., Ferrance, J. P., and Landers, J. P. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 19272-19277
46. Gillers, S., Atkinson, C. D., Klapperich, C., and Singh, S. K. Gastroenterology 2008, 134, A-578