Improved spark and ember detection using stationary wavelet transforms

Journal of Theoretical Biology

Volumn 264, Issue 4, 2010, Pages 1279-1292

  Szabó, László Zsolt ^a,b   Vincze, János ^a   Csernoch, László ^a   Szentesi, Péter ^a  

^a UNIVERSITY OF DEBRECEN   (Hungary)

^b SAPIENTIA HUNGARIAN UNIVERSITY OF TRANSYLVANIA   (Romania)

Author keywords

Automatic detection; Calcium spark; Ember; Wavelet analysis

Indexed keywords

CALCIUM ION;

ALGORITHM; CALCIUM; CYTOLOGY; DETECTION METHOD; IMAGE ANALYSIS; MUSCLE; WAVELET ANALYSIS;

ACCURACY; ALGORITHM; AMPLITUDE MODULATION; ANIMAL CELL; ANIMAL TISSUE; ARTICLE; CALCIUM CELL LEVEL; CALCIUM TRANSPORT; CONFOCAL MICROSCOPY; CONTROLLED STUDY; EXCITATION CONTRACTION COUPLING; IMAGE ANALYSIS; MUSCLE CELL; NONHUMAN; PRIORITY JOURNAL; RELIABILITY; SKELETAL MUSCLE; SPIKE;

ALGORITHMS; ANIMALS; CALCIUM; HUMANS; IMAGE INTERPRETATION, COMPUTER-ASSISTED; KINETICS; MICROSCOPY, CONFOCAL; MUSCLE CELLS; PATTERN RECOGNITION, AUTOMATED; SIGNAL PROCESSING, COMPUTER-ASSISTED;

EID: 77952954133     PISSN: 00225193     EISSN: 10958541     Source Type: Journal    
DOI: 10.1016/j.jtbi.2010.04.005     Document Type: Article

References (30)

1. Bijaoui A., Starck J.L., Murtagh F. Restauration des images multi-échelles par l'algorithme à trous. Traitement du Signal 1994, 11:229-243.
2. Cheng H., Lederer W.J., Cannell M.B. Calcium sparks: elementary events underlying excitation-contraction coupling in heart muscle. Science 1993, 262:740-744.
3. Cheng H., Song L.S., Shirokova N., Gonzalez A., Lakatta E.G., Rios E., Stern M.D. Amplitude distribution of calcium sparks in confocal images: theory and studies with an automatic detection method. Biophys. J. 1999, 76:606-617.
4. Cheng H., Lederer W.J. Calcium sparks. Physiol. Rev. 2008, 88:1491-1545.
5. Csernoch L. Sparks and embers of skeletal muscle: the exciting events of contractile activation. Pflügers Archiv.: Eur. J. Physiol. 2007, 454:869-878.
6. González A., Kirsch W G., Shirokova N., Pizarro G., Stern M D., Ríos E. The spark and its ember. J. Gen. Physiol. 2000, 115:139-157.
7. Hollingworth S., Peet J., Chandler W.K., Baylor S.M. Calcium sparks in intact skeletal muscle fibers of the frog. J. Gen. Physiol. 2001, 118:653-678.
8. Holschneider M., Morlet M., Kronland-Martinet R., Tchamitchian P. Wavelets Time Frequency Methods and Phase Space 1989, Springer Verlag, Berlin, pp. 289-297.
9. 2+ spark amplitude distribution. Biophy. J. 1998, 75:1144-1162.
10. Jin Y., Angelini E., Laine A. Wavelets in medical image processing: denoising, segmentation, and registration. Handbook of Biomedical Image Analysis 2005, Springer, Berlin, pp. 319-324.
11. 2+ sparks in skeletal muscle (review). Progress Biophys. Mol. Biol. 2006, 92:308-332.
12. Koshino K., Saito N., Suzuki S., Tamaki J. Spike noise removal in the scanning laser microscopic image of diamond abrasive grain using a wavelet transform. Opt. Commun. 2002, 211:73-83.
13. Lukacs B., Sztretye M., Almassy J., Sarkozi S., Dienes B., Mabrouk K., Simut C., Szabo L., Szentesi P., De Waard M., Ronjat M., Jona I., Csernoch L. Charged surface area of maurocalcine determines its interaction with the skeletal ryanodine receptor. Biophy. J. 2008, 95:3497-3509.
14. Mallat S.G. A Wavelet Tour of Signal Processing 1999, Academic Press, London. second ed.
15. Picht E., Zima A., Blatter L.A., Bers D.M. SparkMaster-automated calcium spark analysis with ImageJ. Am. J. Physiol. Cell Physiol. 2007, 293:C1073-C1081.
16. Ríos E., Shirokova N., Kirsch G., Pizarro G., Stern M.D., Cheng H., González A. A preferred amplitude of calcium sparks in skeletal muscle. Biophys. J. 2001, 80:169-183.
17. 2+ in skeletal muscle. Cell Calcium 1996, 20:123-128.
18. Sebille S., Cantereau A., Vandebrouck C., Balghi H., Constantin B. Calcium sparks in muscle cells: interactive procedures for automatic detection and measurements on line-scan confocal images series. Comput. Methods Programs Biomed. 2005, 77:57-70.
19. Shensa M.J. The discrete wavelet transform: wedding the À Trous and Mallat algorithms. IEEE T Signal P 1992, 40(10):2464-2482.
20. Song L.S., Stern M.D., Lakatta E.G., Cheng H. Partial depletion of sarcoplasmic reticulum calcium does not prevent calcium sparks in rat ventricular myocytes. J. Physiol. 1997, 505:665-675.
21. Starck, J.L., 1993. The à trous algorithm. In: ESO-MIDAS User's Guide, Volume B. ESO European Organization for Astronomical Research in the Southern Hemisphere. 〈〉. Accessed 26 May 2009. http://www.eso.org/sci/data-processing/software/esomidas.
22. Starck J.L., Murtagh F. Image restoration with noise suppression using the wavelet transform. Astron. Astrophys. 1994, 288:342-348.
23. Starck J.L., Murtagh F. Automatic noise estimation from the multiresolution support. Publ. Astron. Soc. Pac. 1998, 110:193-199.
24. Starck J.L., Murtagh F., Bijaoui A. Image Processing and Data Analysis: The Multiscale Approach 1998, Cambridge University Press, London.
25. Starck J.L., Murtagh F. Astronomical Image and Data Analysis 2002, Springer, Berlin.
26. Unser M., Aldroubi A. A review of wavelets in biomedical applications. P IEEE 1996, 84(4):626-638.
27. Unser, M., 1997. Ten Good Reasons for Using Spline. Proc. SPIE Vol. 3169, Wavelets Applications in Signal and Image Processing V:422-431.
28. Wegner F.V., Both M., Fink R.H.A. Automated detection of elementary calcium release events using the À Trous wavelet transform. Biophys. J. 2006, 90:2151-2163.
29. Wegner F.V., Both M., Fink R.H.A., Friedrich O. Fast XYT imaging of elementary calcium release events in muscle with multifocal multiphoton microscopy and wavelet denoising and detection. IEEE Transact. Med. Im. 2007, 26(7):925-934.
30. Zhou J., Brum G., González A., Launikonis B.S., Stern M.D., Ríos E. Sparks and embers of mammalian muscle. Prop. Sources J. Gen. Physiol. 2003, 122:95-114.