Rational design of catechol-2, 3-dioxygenase for improving the enzyme characteristics

Applied Biochemistry and Biotechnology

Volumn 162, Issue 1, 2010, Pages 116-126

  Wei, Jiashi ^a   Zhou, Ying ^b   Xu, Tao ^b   Lu, Baorong ^a  

^a FUDAN UNIVERSITY   (China)

^b EAST CHINA UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

Author keywords

Catechol 2,3 oxygenase (C23O); Computer simulation; Disulfide bond; Gene site mutagenesis; Stability

Indexed keywords

CATECHOL-2,3-OXYGENASE (C23O); DISULFIDE BOND; DISULFIDE BONDS; OXYGENASES; SITE MUTAGENESIS;

BIODEGRADATION; COMPUTATIONAL METHODS; COMPUTER SIMULATION; ENZYME ACTIVITY; MUTAGENESIS; PHENOLS;

ENZYMES;

ALANINE; CATECHOL 2,3 DIOXYGENASE; CYSTEINE; HISTIDINE; MONOMER;

ARTICLE; DISULFIDE BOND; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME STABILITY; ENZYME STRUCTURE; MOLECULAR MODEL; NONHUMAN; PH; PSEUDOMONAS; SITE DIRECTED MUTAGENESIS; THERMOSTABILITY; WILD TYPE;

AMINO ACID SEQUENCE; CATECHOL 2,3-DIOXYGENASE; CONSERVED SEQUENCE; DISULFIDES; ENZYME STABILITY; ESCHERICHIA COLI; HYDROGEN-ION CONCENTRATION; INTERNET; KINETICS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MUTAGENESIS, SITE-DIRECTED; MUTATION; PROTEIN CONFORMATION; PSEUDOMONAS; TEMPERATURE;

PSEUDOMONAS PUTIDA; PSEUDOMONAS SP.;

EID: 77952890947     PISSN: 02732289     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12010-009-8720-y     Document Type: Article

References (20)

1. Y Zhou JS Wei T Jiang WF Gao YS Ma DZ Wei 2007 Characterisation of a thermostable catechol-2, 3-dioxygenase from phenanthrene-degrading Pseudomonas sp. strain ZJF08 Annals of Microbiology 57 503 508 10.1007/BF03175346 1:CAS:528:DC%2BD1cXhs1yrsbk%3D
2. BR Folsom PJ Chapmane PH Pritchard 1990 Phenol and trichloroethylene degradation by pseudomonas cepacia G4; kinetics and interactions between substrates Applied and Environmental Microbiology 56 1279 1287 1:CAS:528:DyaK3cXktlOmt7w%3D
3. K Takehiro I Tetsuo H Kihachiro T Yoshiyuki N Naganori N Atsushi 1995 Overexpression of pseudomonas putida catechol 2, 3-dioxygenase with high specific activity by genetically engineered Escherichia coli Journal of Biochemistry 117 614 622
4. DT Gibson RE Parales 2000 Aromatic hydrocarbon dioxygenases in environmental biotechnology Current Opinion in Biotechnology 11 236 243 10.1016/S0958-1669(00)00090-2 1:CAS:528:DC%2BD3cXksVGks74%3D (Pubitemid 30326469)
5. DR Boyd ND Sharma CCR Allen 2001 Aromatic dioxygenases: molecular biocatalysis and applications Current Opinion in Biotechnology 12 564 573 10.1016/S0958-1669(01)00264-6 1:CAS:528:DC%2BD38Xjt1Sguw%3D%3D (Pubitemid 34146507)
6. S Harayama M Rekik 1989 Aromatic ring-cleavage enzymes are classified into two gene families Journal of Biological Chemistry 164 15328 15333
7. J Moon H Chang KR Min Y Kim 1995 Cloning and sequencing of the catechol 2, 3-dioxygenase gene of Alcaligenes sp.KF711 Biochemical and Biophysical Research Communications 208 943 949 10.1006/bbrc.1995.1425 1:CAS:528: DyaK2MXkvVeitL8%3D
8. S Meyer R Moser A Neef U Stahl P Kämpfer 1999 Differential detection of key enzymes of polyaromatic-hydrocarbon-degrading bacteria using PCR and gene probes Microbiol 145 1731 1741 10.1099/13500872-145-7-1731 1:CAS:528:DyaK1MXkvFahtbs%3D
9. A Okuta K Ohnishi S Yagame S Harayama 2003 Intersubunit interaction and catalytic activity of catechol 2, 3-dioxygenases Biochemical Journal 371 557 564 10.1042/BJ20021657 1:CAS:528:DC%2BD3sXisleqs7Y%3D (Pubitemid 36547640)
10. M Nozaki K Ono T Nakazawa S Kotani O Hayashi 1968 Metapyrocatechase. II. The role of iron and sulfhydryl groups Journal of Biological Chemistry 243 2682 2690 1:CAS:528:DyaF1cXhtFWktb4%3D
11. I Bartels HJ Knackmuss W Reineke 1984 Suicide inactivation of catechol-2, 3-dioxygenase from Pseudomonas putida mt-2 by 3-halocatechols Applied and Environmental Microbiology 47 500 505 1:CAS:528:DyaL2cXitVGmtr4%3D
12. P Cerdan A Wasserfallen M Rekik KN Timmis S Harayama 1994 Substrate specificity of catechol-2, 3-dioxygenase encoded by TOL plasmid pWW0 of Pseudomonas putida and its relationship to cell growth Journal of Bacteriology 176 6074 6081 1:CAS:528:DyaK2cXmsV2ht7s%3D
13. SF Betz 1993 Disulfide bonds and the stability of globular proteins Protein Science 2 1551 1558 10.1002/pro.5560021002 1:CAS:528:DyaK2cXitlygsbc%3D
14. WJ Wedemeyer E Welker M Narayan HA Scheraga 2000 Disulfide bonds and protein folding Biochem 39 4207 4216 10.1021/bi992922o 1:CAS:528: DC%2BD3cXhsl2hu7Y%3D (Pubitemid 30212634)
15. A Kita S Kita I Fujisawa K Inaka T Ishida K Horiike 1999 An archetypical extradiol-cleaving catecholic dioxygenase: the crystal structure of catechol 2, 3-dioxygenase (metapyrocatechase) from Ppseudomonas putida mt-2 Structure 7 25 34 10.1016/S0969-2126(99)80006-9 1:CAS:528:DyaK1MXhtFGqtro%3D (Pubitemid 29159179)
16. R Sowdhamini N Srinivasan B Shoichet DV Santi C Ramakrishnan P Balaram 1989 Stereochemical modelling of disulfide bridges: criteria for introduction into proteins by site-directed mutagenesis Protein Engineering 3 95 103 10.1093/protein/3.2.95 1:CAS:528:DyaK3cXpsV2gtQ%3D%3D
17. J Liu Y Wang G Liu B Zhang 2004 Comparison of three methods for determination of glutathione Journal of Beijing University of Chemical Technology 31 35 38
18. D Baker A Sali 2001 Protein structure prediction and structural genomics Science 294 93 96 10.1126/science.1065659 1:CAS:528:DC%2BD3MXnsFyisbY%3D (Pubitemid 32952955)
19. Y Zhang 2008 Progress and challenges in protein structure prediction Current Opinion in Structural Biology 18 342 348 10.1016/j.sbi.2008.02.004 1:CAS:528:DC%2BD1cXntlWnsLg%3D
20. J Winkler LD Eltis DF Dwyer M Rohde 1995 Tetrameric structure and cellular location of catechol 2, 3-dioxygenase Archives of Microbiology 163 65 69 10.1007/BF00262205 1:CAS:528:DyaK2MXkvVOhsLs%3D