Allelic diversity and haplotype structure of HLA loci in the Chinese Han population living in the Guanzhong region of the Shaanxi province

Human Immunology

Volumn 71, Issue 6, 2010, Pages 627-633

  Shen, Chun Mei ^a,b,c   Zhu, Bo Feng ^a,b   Ye, Shi Hui ^c   Liu, Meng Li ^c   Yang, Guang ^d   Liu, Sheng ^c   Qin, Hai Xia ^d   Zhang, Hua Dong ^a,b   Lucas, Rudolf ^d   Li, Shen Bing ^a,b  

^a BEIJING UNIVERSITY OF POSTS AND TELECOMMUNICATIONS   (China)

^b XI'AN JIAOTONG UNIVERSITY   (China)

^c Shaanxi Blood Center   (China)

^d MEDICAL COLLEGE OF GEORGIA   (United States)

Author keywords

Allelic frequency; Anthropology; Genetic polymorphisms; Han population; Haplotype frequency; Human leukocyte antigen; Population genetics

Indexed keywords

HLA A ANTIGEN; HLA B ANTIGEN; HLA DR ANTIGEN; HLA ANTIGEN;

ALLELE; ARTICLE; CHINESE; CONTROLLED STUDY; ETHNIC GROUP; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENE LOCUS; GENETIC ANALYSIS; GENETIC DIFFERENCE; GENETIC DISTANCE; GENETIC HETEROGENEITY; GENETIC VARIABILITY; HAPLOTYPE; HLA TYPING; HUMAN; PHYLOGENETIC TREE; POPULATION GENETICS; PRINCIPAL COMPONENT ANALYSIS; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; CHINA; GENETIC POLYMORPHISM; GENETICS; GENOTYPE; POPULATION GROUP;

CHINA; GENE FREQUENCY; GENETICS, POPULATION; GENOTYPE; HAPLOTYPES; HLA ANTIGENS; HUMANS; LINKAGE DISEQUILIBRIUM; POLYMORPHISM, GENETIC; POPULATION GROUPS;

EID: 77952885170     PISSN: 01988859     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.humimm.2010.02.012     Document Type: Article

References (34)

1. Shankarkumar U., Sridharan B., Pitchappan R.M. HLA diversity among Nadars, a primitive Dravidian caste of south India. Tissue Antigens 2003, 62:542-547.
2. Ivanova M., Rozemuller E., Tyufekchiev N., Michailova A., Tilanus M., Naumova E. HLA polymorphism in Bulgarians defined by high resolution typing methods in comparison with other populations. Tissue Antigens 2002, 60:496-504.
3. Pablo S.V., Naif S., Karadsheh A.G.M., Carlos R.A., Francisco L.C. Molecular analysis of HLA allelic frequencies and haplotypes in Jordanians and comparison with other related populations. Hum Immunol 2001, 62:901-909.
4. Müller C.R., Ehninger G., Goldmann S.F. Gene and haplotype frequencies for the loci HLA-A, HLA-B, and HLA-DR based on over 13,000 German blood donors. Hum Immunol 2003, 64:137-151.
5. Schneider S., Kueffer J.M., Roessli D., Excoffier L., Arlequin A software environment for the analysis of population genetics data 1997, Genetics and Biometry Laboratory, University of Geneva, Switzerland, Geneva.
6. Dempster A.P., Laird N.M., Rubin D.M., Dempster A.P., Laird N.M., Rubin D.M. Maximum likelihood for incomplete data via algorithm. J Stat Soc 1977, 39:1-38.
7. Excoffier L., Slatkin M. Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population. Mol Biol Evol 1995, 12:921-927.
8. Lee J., Lee J., Hoyer L.W. The HLA System: A New Approach, vol 6 1990, 141-151. Springer-Verlag, New York.
9. Saitou N., Nei M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 1987, 4:406-425.
10. Schipper R.F., Oudshoorn M., D'Amaro J., van der Zanden H.G., de Lange P., Bakker J.T., et al. Validation of large datasets, an essential prerequisite for data analysis: An analytical survey of the Bone Marrow Donors Worldwide. Tissue Antigens 1996, 47:169-178.
11. Cheng L.H., Wu G.G., Li X.M., Gao S.Q., Chen X., Wang D.M., et al. Allele and haplotype frequencies for the loci HLA-A, B and DRB1 in 2210 Jiangxi Chinese Han unrelated bone marrow donors. J Clin Transfus Lab Med 2006, 8:5-11. (in Chinese).
12. Li C.Y., Jiao S.X., Zhao L., Yang Z.S., Liu X.H., Hu B. HLA allele polymorphism in Qingdao bone bank. J Chinese Blood Transfus 2005, 18:299-302. (in Chinese).
13. Song Y.H., Ma CH H.J., Zhu CF L.V., Nie X.M., Wang M., Liu Y., Zhang P. HLA allele polymorphism in northern Hans of China. J Shandong U (Healthc Sci) 2007, 45:546-549. (in Chinese).
14. Ma H.J., Xiao L.L., Guo K.Y., Yi X.L., Ye X., Shang Z.C. Analysis of HLA-A, B, DRB1 allele frequencies in Guangdong Han population. Guangdong Med J 2005, 26:324-326. (in Chinese).
15. Zhao L., Zhang B.W., Ma R., Du J. Allele frequencies HLA gene of donors in CMDP. Henan, Ganshu and Xinjiang Branch. J Chinese Blood Transfus 2007, 20:26-29. (in Chinese).
16. Zhu Y.Y., Yin P., Shen G., Wu J.M., Liu G.J., Zou J., et al. Study on polymorphism of HLA-A, B andDRB1 genes in Chinese Han population, Hubei. J Public Health Prev Med 2006, 17:11-13. (in Chinese).
17. Li C.L., Tang Z.H., Fang L.H., Li Y.R., Su H.X., Wei H.L. The analysis of HLA-A, B and DRB1 allelic polymorphism in Han race population in Lanzhou region of China. Zhonghua Yi Xue Yi Chuan Xue Za Zhi 2006, 23:89-91. (in Chinese).
18. Meng Q.L., Yu W.J., Liang X.H., Wang W., Hu R.H., Bi X.L., Chen M., ye P. The HLA gene distribution and haplotype analysis of hematopoietic stem cell donors of Han population in LiaoNan region. J Chinese Blood Transfus 2007, 20:30-32. (in Chinese).
19. Lan T., Zhang D.M., Wang G.Q. Polymorphism of HLA-A, -B and DRB1 in Han population of Shanxi province. Zhonghua Yi Xue Yi Chuan Xue Za Zhi 2005, 22:583-584. (in Chinese).
20. Zuo X.F., Wang C.Q., Zheng Y., Guo Y.J., Zhuang L.J. The HLA polymorphisms of 318 bone marrow donor volunteers of Han population in Sanming city. Journal of Fujian Medical University 2006, 40:83-85. (in Chinese).
21. Li W., Tang R.C., Yu M.G., Pan Q.Q., Liao K.R., Xue M., et al. The polymorphism and haplotype analysis of HLA-A, B and DRB1 gene of 20248 donors in CMDP Jiangsu Branch. J Blood Transfus 2007, 20:276-281. (in Chinese).
22. Shen C.M., Zhu B.F., Liu M.L., Zhang H.D., Li S.B. HLA-A B and DRB1 genes and haplotype polymorphisms in Hui nationality group of Ningxia Hui autonomous region in China. J Fourth Military Med Univ 2008, 29:1540-1543. (in Chinese).
23. Shen C.M., Zhu B.F., Li S.B. HLA-A B and DRB1 gene polymorphisms in Mongol ethnic group of Inner Mongolia, China. Yi Chuan 2008, 30:164-168. (in Chinese).
24. Kang L.L., Zhang H.B., Gao F., Yuang D.Y., Deng T.J., Yan C.X., Li S.B. Determination of HLA-A, -B allele polymorphism in the Luoba nationality living in Tibet Autonomous Region in China. Zhonghua Yi Xue Yi Chuan Xue Za Zhi 2005, 22:227-228. (in Chinese).
25. Kang L.L., Gao F., Zhang H.B., Yuan D.Y., Zhao F.C., Li S.B. Determination of HLA-DRB1 gene polymorphism in Luoba ethnic group of Tibet. Zhong Nan Xue Xue Bao Yi Xue Ban 2005, 30:135-139. (in Chinese).
26. Zhang H.B., Gao F., Kang L.L., Li S.B. Determination of HLA-A, B, and DRB1 gene polymorphism in Monba ethnic group of Xizang Autonomous Region, China. Zhonghua Yi Xue Yi Chuan Xue Za Zhi 2005, 22:344-346. (in Chinese).
27. Chen S., Hu Q., Xie Y., Zhou L., Xiao C., Wu Y., Xu A. Origin of Tibeto-Burman speakers: Evidence from HLA allele distribution in Lisu and Nu inhabiting Yunnan of China. Hum Immunol 2007, 68:550-559.
28. Qiu X.P., Tan Y., Zuo Z.H., Wei Y., Wu X.X. Distribution of HLA-A, -B allele and haplotype polymorphism in the Tu nationality of Hubei province in China. Zhonghua Yi Xue Yi Chuan Xue Za Zhi 2006, 23:219-221. (in Chinese).
29. Chanock S.J., Foster C.B., Miller F.W., O'Hanlon T.P. H.L.A.-A.-B.-Cw, -DQA1 and -DRB1 alleles in a Caucasian population from Bethesda, USA. Hum Immunol 2004, 65:1211-1223.
30. Chanock S.J., Foster C.B., Miller F.W., O'Hanlon T.P. HLA-A, -B.-Cw, -DQA1 and DRB1 in an African American population from Bethesda, USA. Hum Immunol 2004, 65:1223-1235.
31. Ke Y.H., Su B., Xiao J.H., Chen H., Huang W., Chen Z., et al. Y chromosome haplotype distrbution in Han Chinese populations and modern human origin in East Asians. Science in China (series C) 2001, 44:225-232. (in Chinese).
32. Yao Y.G., Kong Q.P., Bandelt H.J., Kivisild T., Zhang Y.P. Phylogeographic differentiation of mitochondrial DNA in Han Chinese. Am J Hum Genet 2002, 70:635-651.
33. Wen B., Li H., Lu D., Song X., Zhang F., He Y., et al. Genetic evidence supports demic diffusion of Han culture. Nature 2004, 431:302-305.
34. Hong W., Fu Y., Chen S., Wang F., Ren X., Xu A. Distributions of HLA class I alleles and haplotypes in northern Han Chinese. Tissue Antigens 2005, 66:297-304.