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Volumn 26, Issue 10, 2010, Pages 1378-1380

BoolNet-an R package for generation, reconstruction and analysis of Boolean networks

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER PROGRAM; COMPUTER SIMULATION; GENE EXPRESSION PROFILING; GENE REGULATORY NETWORK; METHODOLOGY;

EID: 77952851181     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq124     Document Type: Article
Times cited : (329)

References (17)
  • 1
    • 58049164511 scopus 로고    scopus 로고
    • Boolean network simulations for life scientists
    • Albert, I. et al. (2008) Boolean network simulations for life scientists. Source Code Biol. Med., 3, 16.
    • (2008) Source Code Biol. Med. , vol.3 , pp. 16
    • Albert, I.1
  • 2
    • 0141903547 scopus 로고    scopus 로고
    • Boolean dynamics of networks with scale-free topology
    • Aldana, M. (2003) Boolean dynamics of networks with scale-free topology. Physica D, 185, 45-66.
    • (2003) Physica D , vol.185 , pp. 45-66
    • Aldana, M.1
  • 3
    • 0002226683 scopus 로고    scopus 로고
    • Pajek - program for large network analysis
    • Batagelij, V. and Mrvar, A. (1998) Pajek - program for large network analysis. Connections, 21, 47-57.
    • (1998) Connections , vol.21 , pp. 47-57
    • Batagelij, V.1    Mrvar, A.2
  • 4
    • 27144450537 scopus 로고    scopus 로고
    • Systems biology Less is more in modeling large genetic networks
    • Bornholdt, S. (2005) Systems biology. Less is more in modeling large genetic networks. Science, 310, 449-451.
    • (2005) Science , vol.310 , pp. 449-451
    • Bornholdt, S.1
  • 5
    • 0036207347 scopus 로고    scopus 로고
    • Modeling and simulation of genetic regulatory systems: a literature review
    • de Jong, H. (2002) Modeling and simulation of genetic regulatory systems: a literature review. J. Comp. Biol., 9, 67-103.
    • (2002) J. Comp. Biol. , vol.9 , pp. 67-103
    • de Jong, H.1
  • 6
    • 33747874092 scopus 로고    scopus 로고
    • Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle
    • Fauré, A. et al. (2006) Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle. Bioinformatics, 22, e124-e131.
    • (2006) Bioinformatics , vol.22
    • Fauré, A.1
  • 7
    • 0005126318 scopus 로고    scopus 로고
    • Time out of joint: attractors in asynchronous random Boolean networks
    • Husbands, P. and Harvey, I. (eds) MIT Press, Cambridge, MA, USA
    • Harvey, I. and Bossomaier, T. (1997) Time out of joint: attractors in asynchronous random Boolean networks. In Husbands, P. and Harvey, I. (eds) Proceedings of the Fourth European Conference on Artificial Life. MIT Press, Cambridge, MA, USA, pp. 67-75.
    • (1997) Proceedings of the Fourth European Conference on Artificial Life , pp. 67-75
    • Harvey, I.1    Bossomaier, T.2
  • 8
    • 0014489272 scopus 로고
    • Metabolic stability and epigensis in randomly constructed genetic nets
    • Kauffman, S.A. (1969) Metabolic stability and epigensis in randomly constructed genetic nets. J. Theor. Biol., 22, 437-467.
    • (1969) J. Theor. Biol. , vol.22 , pp. 437-467
    • Kauffman, S.A.1
  • 10
    • 34447551397 scopus 로고    scopus 로고
    • Structural and functional analysis of cellular networks with CellNetAnalyzer
    • Klamt, S. et al. (2007) Structural and functional analysis of cellular networks with CellNetAnalyzer. BMC Syst. Biol., 1, 2.
    • (2007) BMC Syst. Biol. , vol.1 , pp. 2
    • Klamt, S.1
  • 11
    • 0038047901 scopus 로고    scopus 로고
    • On learning gene regulatory networks under the Boolean network model
    • Lähdesmäki, H. et al. (2003) On learning gene regulatory networks under the Boolean network model. Mach. Learn., 52, 147-167.
    • (2003) Mach. Learn. , vol.52 , pp. 147-167
    • Lähdesmäki, H.1
  • 12
    • 1842687878 scopus 로고    scopus 로고
    • The yeast cell-cycle network is robustly designed
    • Li, F. et al. (2004) The yeast cell-cycle network is robustly designed. Proc. Natl Acad. Sci. USA, 101, 4781-4786.
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 4781-4786
    • Li, F.1
  • 13
    • 0031616241 scopus 로고    scopus 로고
    • REVEAL, a general reverse engineering algorithm for inference of genetic network architectures
    • Liang, S. et al. (1998) REVEAL, a general reverse engineering algorithm for inference of genetic network architectures. Pac. Symp. Biocomp., 3, 18-29.
    • (1998) Pac. Symp. Biocomp. , vol.3 , pp. 18-29
    • Liang, S.1
  • 14
    • 17644385076 scopus 로고    scopus 로고
    • Computational representation of developmental genetic regulatory networks
    • Longabaugh, W.J.R. et al. (2005) Computational representation of developmental genetic regulatory networks. Dev. Biol., 283, 1-16.
    • (2005) Dev. Biol. , vol.283 , pp. 1-16
    • Longabaugh, W.J.R.1
  • 15
    • 0036184629 scopus 로고    scopus 로고
    • Probabilistic Boolean networks: a rule-based uncertainty model for gene-regulatory networks
    • Shmulevich, I. et al. (2002) Probabilistic Boolean networks: a rule-based uncertainty model for gene-regulatory networks. Bioinformatics, 18, 261-274.
    • (2002) Bioinformatics , vol.18 , pp. 261-274
    • Shmulevich, I.1
  • 16
    • 0031742022 scopus 로고    scopus 로고
    • Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
    • Spellman, P.T. et al. (1998) Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol. Biol. Cell, 9, 3273-3297.
    • (1998) Mol. Biol. Cell , vol.9 , pp. 3273-3297
    • Spellman, P.T.1
  • 17
    • 77952846095 scopus 로고    scopus 로고
    • Discretedynamicslab:toolsforinvestigatingcellularautomataand discrete dynamical networks
    • Adamatzky, A. and Komosinski, M. (eds) Springer, London
    • Wuensche, A. (2009)Discretedynamicslab:toolsforinvestigatingcellularautomataand discrete dynamical networks. In Adamatzky, A. and Komosinski, M. (eds) Artificial Life Models in Software. Springer, London, pp. 215-258.
    • (2009) Artificial Life Models in Software , pp. 215-258
    • Wuensche, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.