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Volumn , Issue , 2010, Pages 907-912

A parallel programming framework for multi-core DNA sequence alignment

Author keywords

Computational biology framework; Multi core processor; Parallel programming

Indexed keywords

BIOLOGICAL SEQUENCE ALIGNMENT; COARSE-GRAINED; COMPUTATIONAL BIOLOGY; MULTI CORE; MULTI-CORE PROCESSOR; PROCESSING CORE; QUERY SEQUENCE;

EID: 77952718889     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/CISIS.2010.100     Document Type: Conference Paper
Times cited : (11)

References (12)
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  • 4
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    • A highly parameterized and efficient FPGA-based skeleton for pairwise biological sequence alignment
    • April
    • K. Benkrid, Y. Liu, and A. Benkrid, "A highly parameterized and efficient FPGA-based skeleton for pairwise biological sequence alignment," Very Large Scale Integration (VLSI) Systems, IEEE Trans. on, vol. 17, no. 4, pp. 561-570, April 2009.
    • (2009) Very Large Scale Integration (VLSI) Systems, IEEE Trans. on , vol.17 , Issue.4 , pp. 561-570
    • Benkrid, K.1    Liu, Y.2    Benkrid, A.3
  • 7
    • 33846697176 scopus 로고    scopus 로고
    • Striped Smith-Waterman speeds database searches six times over other SIMD implementations
    • M. Farrar, "Striped Smith-Waterman speeds database searches six times over other SIMD implementations," Bioinformatics, vol. 23, no. 2, pp. 156-161, 2007.
    • (2007) Bioinformatics , vol.23 , Issue.2 , pp. 156-161
    • Farrar, M.1
  • 8
    • 23944470064 scopus 로고    scopus 로고
    • Exploiting multi-level parallelism for homology search using general purpose processors
    • Jul.
    • X. Meng and V. Chaudhary, "Exploiting multi-level parallelism for homology search using general purpose processors," in Parallel and Distributed Systems. Proc. Int. Conf. on, vol. 2, Jul. 2005, pp. 331-335.
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    • Meng, X.1    Chaudhary, V.2
  • 9
    • 74549205661 scopus 로고    scopus 로고
    • CUDASW++: Optimizing Smith-Waterman sequence database searches for CUDA-enabled graphics processing units
    • Y. Liu, D. Maskell, and B. Schmidt, "CUDASW++: optimizing Smith-Waterman sequence database searches for CUDA-enabled graphics processing units," BMC Research Notes, vol. 2, no. 1, p. 73, 2009.
    • (2009) BMC Research Notes , vol.2 , Issue.1 , pp. 73
    • Liu, Y.1    Maskell, D.2    Schmidt, B.3
  • 10
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    • An efficient implementation of Smith Waterman algorithm on GPU using CUDA, for massively parallel scanning of sequence databases
    • L. Ligowski and W. Rudnicki, "An efficient implementation of Smith Waterman algorithm on GPU using CUDA, for massively parallel scanning of sequence databases," in Parallel & Distributed Processing (IPDPS). IEEE Int. Symp., May 2009, pp. 1-8.
    • Parallel & Distributed Processing (IPDPS). IEEE Int. Symp., May 2009 , pp. 1-8
    • Ligowski, L.1    Rudnicki, W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.