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Volumn , Issue , 2009, Pages 61-70

Quantitative analysis of sequence alignment applications on multiprocessor architectures

Author keywords

Algorithms; Measurement; Performance

Indexed keywords

BIOINFORMATICS APPLICATIONS; BIOLOGICAL INFORMATION; COMPUTATIONAL PLATFORMS; FINE GRAIN PARALLELISM; MULTI PROCESSOR ARCHITECTURE; MULTIPLE DIMENSIONS; PERFORMANCE; SMITH-WATERMAN ALGORITHM;

EID: 77952682294     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/1531743.1531755     Document Type: Conference Paper
Times cited : (6)

References (25)
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  • 2
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    • Embl database. http://www.ebi.ac.uk/embl/.
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    • Blocks+: A non-redundant database of protein alignment blocks derived from multiple compilations
    • J. Henikoff, S. Henikoff and S. Pietrokovski. Blocks+: a non-redundant database of protein alignment blocks derived from multiple compilations. Bioinformatics, 15, 1999.
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    • Henikoff, J.1    Henikoff, S.2    Pietrokovski, S.3
  • 15
    • 43349092363 scopus 로고    scopus 로고
    • Cuda compatible gpu cards as efficient hardwarer accelerator for smith-waterman sequence alignment
    • S. A. Manavski and G. Valle. Cuda compatible gpu cards as efficient hardwarer accelerator for smith-waterman sequence alignment. BMC Bioinformatics, 9, 2008.
    • (2008) BMC Bioinformatics , vol.9
    • Manavski, S.A.1    Valle, G.2
  • 16
    • 0026538781 scopus 로고
    • Comparing machine-independent versus machine-specific parallelization of a software platform for biological sequence comparison
    • P. L. Miller, P. M. Nadkarni, and W. R. Pearson. Comparing machine-independent versus machine-specific parallelization of a software platform for biological sequence comparison. Comput. Appl. Biosci., 1992.
    • (1992) Comput. Appl. Biosci.
    • Miller, P.L.1    Nadkarni, P.M.2    Pearson, W.R.3
  • 17
    • 0025950944 scopus 로고
    • Searching protein sequence libraries: Comparison of the sensitivity and selectivity of the smith-waterman and FASTA algorithms
    • W. R. Pearson. Searching protein sequence libraries: comparison of the sensitivity and selectivity of the smith-waterman and FASTA algorithms. Genomics, 1991.
    • (1991) Genomics
    • Pearson, W.R.1
  • 23
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    • Sensitivity and selectivity in protein similarity searches: A comparison of smith-waterman in hardware to blast and fasta
    • E. Shpaer, M. Robinson, D. Yee, J. Candlin, R. Mines, and T. Hunkapiller. Sensitivity and selectivity in protein similarity searches: A comparison of smith-waterman in hardware to blast and fasta. Genomics, 38:179-191, 1996.
    • (1996) Genomics , vol.38 , pp. 179-191
    • Shpaer, E.1    Robinson, M.2    Yee, D.3    Candlin, J.4    Mines, R.5    Hunkapiller, T.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.