Transferability of microsatellite markers in the betulaceae

Journal of the American Society for Horticultural Science

Volumn 135, Issue 2, 2010, Pages 159-173

  Gürcan, Kahraman ^a   Mehlenbacher, Shawn A ^a  

^a WASHINGTON STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALNUS; BETULA; BETULACEAE; CARPINUS; CORYLUS; CORYLUS AVELLANA; OSTRYA; OSTRYOPSIS;

EID: 77952578416     PISSN: 00031062     EISSN: None     Source Type: Journal    
DOI: 10.21273/jashs.135.2.159     Document Type: Article

References (51)

1. Barbara, T., C. Palma-Silva, G.M. Paggi, F. Bered, M.F. Fay, and C. Lexer. 2007. Cross-species transfer of nuclear microsatellite markers: Potential and limitations. Mol. Ecol. 16:3759-3767.
2. Bassil, N.V., R. Botta, and S.A. Mehlenbacher. 2005a. Microsatellite markers in hazelnut: Isolation, characterization and cross-species amplification. J. Amer. Soc. Hort. Sci. 130:543-549.
3. Bassil, N.V., R. Botta, and S.A. Mehlenbacher. 2005b. Additional microsatellite markers of the european hazelnut. Acta Hort. 686:105- 110.
4. Bennetzen, J.L. 2000. Comparative sequence analysis of plant nuclear genomes: Microcolinearity and its many exceptions. Plant Cell 12:1021-1029.
5. Boccacci, P., A. Akkak, N.V. Bassil, S.A. Mehlenbacher, and R. Botta. 2005. Characterization and evaluation of microsatellite loci in european hazelnut (C. avellana) and their transferability to other Corylus species. Mol. Ecol. Notes 5:934-937.
6. Botstein, D., R.L. White, M.H. Skolnick, and R.W. Davies. 1980. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am. J. Hum. Genet. 32:314-331.
7. Botta, R., G.M. Emanuel, S. Sacerdote, and R. Vallania. 1986. Indagine cariologica in alcune specie del genere Corylus (in Italian). Rivista di Ortoflorfrutticoltura Italiana 70:323-329.
8. Chen, Z. and J. Li. 2004. Phylogenetics and biogeography of Alnus (Betulaceae) inferred from sequences of nuclear ribosomal DNA ITS region. Int. J. Plant Sci. 165:325-335.
9. Chen, Z.D., S.R. Manchester, and H.Y. Sunday. 1999. Phylogeny and evolution of the Betulaceae as inferred from DNA sequences, morphology, and paleobotany. Amer. J. Bot. 86:1168-1181.
10. Cipriani, G., G. Lot, W.G. Huang, M.T. Marrazzo, E. Peterlunger, and R. Testolin. 1999. AC/GT and AG/CT microsatellite repeats in peach [Prunus persica (L) Batsch]: Isolation, characterisation and cross-species amplification in Prunus. Theor. Appl. Genet. 99:65-72.
11. Davis, J.W., D. Henderson, M. Kobayashi, and M.T. Clegg. 1998. Genealogical relationships among cultivated avocado as revealed through RFLP analysis. J. Hered. 89:319-323.
12. Decroocq, V., M.G. Fave, L. Hagen, L. Bordenave, and S. Decroocq. 2003. Development and transferability of apricot and grape EST microsatellite markers across taxa. Theor. Appl. Genet. 106:912-922.
13. Dirlewanger, E., E. Graziano, T. Joobeur, F. Garriga-Caldere, P. Cosson, W. Howad, and P. Arus. 2004. Comparative mapping and marker-assisted selection in Rosaceae fruit crops. Proc. Natl. Acad. Sci. USA 29:9891-9896.
14. Ellis, J.R. and J.M. Burke. 2007. EST-SSRs as a resource for population genetic analyses. Heredity 99:125-132.
15. Erdogǎan, V. and S.A. Mehlenbacher. 2000. Phylogenetic relationships of Corylus species (Betulaceae) based on nuclear ribosomal DNA ITS region and chloroplast matK gene sequences. Syst. Bot. 25:727- 737.
16. Forest, F. and A. Bruneau. 2000. Phylogenetic analysis, organization, and molecular evolution of the nontranscribed spacer of 5S ribo- somal RNA genes in Corylus (Betulaceae). Int. J. Plant Sci. 161:793-806.
17. Gökirmak, T., S.A. Mehlenbacher, and N.V. Bassil. 2009. Character- ization of european hazelnut (Corylus avellana) cultivars using SSR markers. Genet. Resources Crop Evol. 56:147-172.
18. Gürcan, K. 2009. Simple sequence repeat marker development and use in european hazelnut (Corylus avellana L.). PhD Diss., Oregon State Univ., Corvallis.
19. Gürcan, K., S.A. Mehlenbacher, R. Botta, and P. Boccacci. 2010. Development, characterization, segregation, and mapping of micro- satellite markers for european hazelnut (Corylus avellana L.) from enriched genomic libraries and usefulness in genetic diversity studies. Tree Genet. Genomes, doi: 10.1007/s11295-010-0269-y.
20. Heesacker, A., V.K. Kishore, W. Gao, S. Tang, J.M. Kolkman, A. Gingle, M. Matvienko, A. Kozik, R.M. Michelmore, Z. Lai, L.H. Rieseberg, and S.J. Knapp. 2008. SSRs and INDELs mined from the sunflower EST database: Abundance, polymorphisms, and cross- taxa utility. Theor. Appl. Genet. 117:1021-1029.
21. Hoffmann-Sommergruber, K., M. Vanek-Krebitz, C. Radauer, J. Wen, F. Ferreira, O. Scheiner, and H. Breiteneder. 1997. Genomic characterization of members of the Bet v 1 family: Genes coding for allergens and pathogenesis-related proteins share intron positions. Gene 197:91-100.
22. Huang, X. and A. Madan. 1999. CAP3: A DNA sequence assembly program. Genome Res. 9:868-877.
23. Järvinen, P., J. Lemmetyinen, O. Savolainen, and T. Sopanen. 2003. DNA sequence variation in BpMADS2 gene in two populations of Betula pendula. Mol. Ecol. 12:369-384.
24. Järvinen, P., A. Palmé, L.O. Morales, M. Lännenpää, M. Keinänen, T. Sopanen, and M. Lascoux. 2004. Phylogenetic relationships of Betula species (Betulaceae) based on nuclear ADH and chloroplast matK sequences. Amer. J. Bot. 91:1834-1845.
25. Kulju, K.K.M., M. Pekkinen, and S. Varvio. 2004. Twenty-three microsatellite primer pairs for Betula pendula (Betulaceae). Mol. Ecol. Notes 4:471-473.
26. Liu, K. and S.V. Muse. 2005. PowerMarker: An integrated analysis environment for genetic marker analysis. Bioinformatics 21:2128- 2129.
27. Lunde, C.F., S.A. Mehlenbacher, and D.C. Smith. 2000. Survey of hazelnut cultivars for response to eastern filbert blight inoculation. HortScience 35:729-731.
28. Lüttkopf, D., U. Müller, P.S. Skov, B.K. Ballmer-Weber, B. Wüthrich, K. Skamstrup Hansen, L.K. Poulsen, M. Kastner, D. Haustein, and S. Veiths. 2001. Comparison of four variants of a major allergen in hazelnut (Corylus avellana) Cor a 1.04 with the major hazel pollen allergen Cor a 1.01. Mol. Immunol. 38:515-525.
29. Mehlenbacher, S., R. Brown, E. Nouhra, T. Gökirmak, N.V. Bassil, and T. Kubisiak. 2006. A genetic linkage map for hazelnut (Corylus avellana L.) based on RAPD and SSR markers. Genome 49:122-133.
30. National Center for Biotechnology Information. 2010. National Center for Biotechnology Information. 30 Mar. 2010. .
31. Navarro, E., J. Bousquet, A. Moiroud, A. Munive, D. Piou, and P. Normand. 2003. Molecular phylogeny of Alnus (Betulaceae), inferred from nuclear ribosomal DNA ITS sequences. Plant Soil 254:207-217.
32. Nei, M. 1973. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. USA 70:3321-3323.
33. Oygu, K., Y. Tsuda, T. Sugaya, H. Yoshimaru, and Y. Ide. 2003. Identification and characterization of microsatellite loci in Betula maximowicziana Regel. Mol. Ecol. Notes 3:268-269.
34. Pandian, A., R. Ford, and P.W.J. Taylor. 2000. Transferability of sequence tagged microsatellite site (STMS) primers across four major pulses. Plant Mol. Biol. Rpt. 18:395.
35. Paterson, A.H., M. Freeling, and T. Sasaki. 2007. Grains of knowl- edge: Genomics of model cereals. Genome Res. 15:1643-1650.
36. Pekkinen, M., S. Varvio, K.K.M. Kulju, H. Kärkkäinen, S. Smolander, A. Viherä-Aarnio, V. Koski, and M.J. Sillanpää. 2005. Linkage map of birch, Betula pendula Roth, based on microsatellites and amplified fragment length polymorphisms. Genome 48:619-625.
37. Pierantoni, L., K.H. Cho, I.S. Shin, R. Chiodini, S. Tartarini, L. Dondini, S.J. Kang, and S. Sansavini. 2004. Characterisation and transferability of apple SSRs to two european pear F1 populations. Theor. Appl. Genet. 109:1519-1524.
38. Rallo, P., I. Tenzer, C. Gessler, L. Baldoni, G. Dorado, and A. Martín. 2003. Transferability of olive microsatellite loci across the genus Olea. Theor. Appl. Genet. 107:940-946.
39. Rozen, S. and H.J. Skaletsky. 2000. Primer3 on the WWW for general users and for biologist programmers, p. 365-386. In: S. Krawetz and S. Misener (eds.). Bioinformatics methods and protocols: Methods in molecular biology. Humana Press, Totowa, NJ.
40. Santino, A., A. De Paolis, A. Gallo, A. Quarta, R. Casey, and G. Mita. 2003. Biochemical and molecular characterization of hazelnut (Corylus avellana) seed lipoxygenases. Eur. J. Biochem. 270: 4365-4375.
41. Schenk, M., C.N. Thienpont, W. Koopman, L. Gilissen, and M. Smulders. 2008. Phylogenetic relationships in Betula (Betulaceae) based on AFLP markers. Tree Genet. Genomes 4:911-924.
42. Schocker, F., D. Lüttkopf, S. Scheurer, A. Petersen, A. Cistero- Bahima, E. Enrique, S. Vieths, and W. Becker. 2002. Hazelnut LTP, Cor a 8: Molecular cloning and clinical relevance. J. Allergy Clin. Immunol. 109:302.
43. Snow, N. and P. Goldblatt. 1992. Chromosome numbers in Ticoden-dron (Fagales, Ticodendraceae). Ann. Mo. Bot. Gard. 79:906-907.
44. Swoboda, I., A. Jilek,F.Ferreira, E. Engel, K. Hoffman-Sommergruber, O. Scheiner, D. Kraft, H. Breiteneder, E. Pittenauer, E. Schmid, O. Vicente, E. Heberle-Bors, H. Ahorn, and M. Breitenbach. 1995. Isoforms of Betv 1,the major birchpollen allergen,analyzed by liquid chromatography, mass spectrometry, and cDNA cloning. J. Biol. Chem. 270:2607-2613.
45. Temnykh, S., G. DeClerck, A. Lukashova, L. Lipovich, S. Carinhour, and S. McCouch. 2001. Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): Frequency, length variation, transposon associations, and genetic marker potential. Genome Res. 11:1441-1452.
46. Truong, C., A.E. Palme,F.Fleber, and Y.Naciri-Graven. 2005.Isolation and characterization of microsatellite markers in the tetraploid birch, Betula pubescens ssp. tortuosa. Mol. Ecol. Notes 5:96-98.
47. Van Ooijen, J.W. and R.E. Voorrips. 2001. JoinMap, version 3.0: Software for the calculation of genetic linkage maps. Plant Research International, Wageningen, The Netherlands.
48. Varshney, R.K., R. Sigmund, A. Borner, V. Korzun, N. Stein, M.E. Sorrells, P. Langridge, and A. Graner. 2005. Interspecific trans- ferability and comparative mapping of barley EST-SSR markers in wheat, rye and rice. Plant Sci. 168:195-202.
49. Wu, B., C. Lian, and T. Hogetsu. 2002. Development of microsatellite markers in white birch (Betula platyphylla var. japonica). Mol. Ecol. Notes 2:413-415.
50. Yoo, K.O. and J. Wen. 2002. Phylogeny and biogeography of Carpinus and sub family Coryloideae (Betulaceae).Int. J. Plant Sci.163:641-650.
51. Zhang, L.Y., M. Bernard, P. Leroy, C. Feuillet, and P. Sourdille. 2005. High transferability of bread wheat EST-derived SSRs to other cereals. Theor. Appl. Genet. 111:677-687.