메뉴 건너뛰기




Volumn 15, Issue 9-10, 2010, Pages 365-370

Biochemical modeling with Systems Biology Graphical Notation

Author keywords

[No Author keywords available]

Indexed keywords

COMMUNICATION SOFTWARE; COMPLEX FORMATION; COMPUTER ANALYSIS; COMPUTER INTERFACE; COMPUTER SIMULATION; KNOWLEDGE BASE; MARKUP LANGUAGE; MATHEMATICAL MODEL; METABOLIC REGULATION; PROTEIN PHOSPHORYLATION; REVIEW; STOICHIOMETRY; SYSTEMS BIOLOGY;

EID: 77952542934     PISSN: 13596446     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.drudis.2010.02.012     Document Type: Review
Times cited : (9)

References (21)
  • 1
    • 0036500993 scopus 로고    scopus 로고
    • Systems biology: a brief overview
    • Kitano H. Systems biology: a brief overview. Science 2002, 295:1662-1664.
    • (2002) Science , vol.295 , pp. 1662-1664
    • Kitano, H.1
  • 2
    • 19344372443 scopus 로고    scopus 로고
    • Systems biology, integrative biology, predictive biology
    • Liu E.T. Systems biology, integrative biology, predictive biology. Cell 2005, 121:505-506.
    • (2005) Cell , vol.121 , pp. 505-506
    • Liu, E.T.1
  • 3
    • 19344372271 scopus 로고    scopus 로고
    • Systems biology: its practice and challenges
    • Aderem A. Systems biology: its practice and challenges. Cell 2005, 121:511-513.
    • (2005) Cell , vol.121 , pp. 511-513
    • Aderem, A.1
  • 4
    • 0037342537 scopus 로고    scopus 로고
    • The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models
    • Hucka M., et al. The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics 2003, 19:524-531.
    • (2003) Bioinformatics , vol.19 , pp. 524-531
    • Hucka, M.1
  • 5
    • 33644877164 scopus 로고    scopus 로고
    • BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems
    • Le Novère N., et al. BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems. Nucleic Acids Res. 2006, 34:D689-D691.
    • (2006) Nucleic Acids Res. , vol.34
    • Le Novère, N.1
  • 6
    • 34249880408 scopus 로고    scopus 로고
    • Data and model integration using JWS Online
    • van Gend C., et al. Data and model integration using JWS Online. In Silico Biol. 2007, 7:S27-S35.
    • (2007) In Silico Biol. , vol.7
    • van Gend, C.1
  • 7
    • 2442595958 scopus 로고    scopus 로고
    • CellML: its future, present and past
    • Lloyd C.M., et al. CellML: its future, present and past. Prog. Biophys. Mol. Biol. 2004, 85:433-450.
    • (2004) Prog. Biophys. Mol. Biol. , vol.85 , pp. 433-450
    • Lloyd, C.M.1
  • 8
    • 0032776303 scopus 로고    scopus 로고
    • Molecular interaction map of the mammalian cell cycle control and DNA repair systems
    • Kohn K.W. Molecular interaction map of the mammalian cell cycle control and DNA repair systems. Mol. Biol. Cell 1999, 10:2703-2734.
    • (1999) Mol. Biol. Cell , vol.10 , pp. 2703-2734
    • Kohn, K.W.1
  • 9
    • 0034308226 scopus 로고    scopus 로고
    • The visual display of regulatory information and networks
    • Pirson I., et al. The visual display of regulatory information and networks. Trends Cell Biol. 2000, 10:404-408.
    • (2000) Trends Cell Biol. , vol.10 , pp. 404-408
    • Pirson, I.1
  • 10
    • 0035234673 scopus 로고    scopus 로고
    • A basis for a visual language for describing, archiving and analyzing functional models of complex biological systems
    • RESEARCH0012
    • Cook D.L., et al. A basis for a visual language for describing, archiving and analyzing functional models of complex biological systems. Genome Biol. 2001, 2. RESEARCH0012.
    • (2001) Genome Biol. , vol.2
    • Cook, D.L.1
  • 11
    • 0036326896 scopus 로고    scopus 로고
    • PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways
    • Demir E., et al. PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways. Bioinformatics 2002, 18:996-1003.
    • (2002) Bioinformatics , vol.18 , pp. 996-1003
    • Demir, E.1
  • 12
    • 23444439817 scopus 로고    scopus 로고
    • Using process diagrams for the graphical representation of biological networks
    • Kitano H., et al. Using process diagrams for the graphical representation of biological networks. Nat. Biotechnol. 2005, 23:961-966.
    • (2005) Nat. Biotechnol. , vol.23 , pp. 961-966
    • Kitano, H.1
  • 13
    • 4544371460 scopus 로고    scopus 로고
    • A graphical notation for biochemical networks
    • Kitano H. A graphical notation for biochemical networks. BIOSILICO 2003, 1:169-176.
    • (2003) BIOSILICO , vol.1 , pp. 169-176
    • Kitano, H.1
  • 14
    • 68449103579 scopus 로고    scopus 로고
    • The Systems Biology Graphical Notation
    • Le Novère N., et al. The Systems Biology Graphical Notation. Nat. Biotechnol. 2009, 27:735-741.
    • (2009) Nat. Biotechnol. , vol.27 , pp. 735-741
    • Le Novère, N.1
  • 15
    • 9444266171 scopus 로고    scopus 로고
    • CellDesigner: a process diagram editor for gene-regulatory and biochemical networks
    • Funahashi A., et al. CellDesigner: a process diagram editor for gene-regulatory and biochemical networks. BIOSILICO 2003, 1:159-162.
    • (2003) BIOSILICO , vol.1 , pp. 159-162
    • Funahashi, A.1
  • 16
    • 71749113685 scopus 로고    scopus 로고
    • TIde: a software for the systematic scanning of drug targets in kinetic network models
    • Schulz M., et al. TIde: a software for the systematic scanning of drug targets in kinetic network models. BMC Bioinformatics 2009, 10:344.
    • (2009) BMC Bioinformatics , vol.10 , pp. 344
    • Schulz, M.1
  • 17
  • 18
    • 32544443964 scopus 로고    scopus 로고
    • Systems Biology Toolbox for MATLAB: a computational platform for research in Systems Biology
    • Schmidt H., Jirstrand M. Systems Biology Toolbox for MATLAB: a computational platform for research in Systems Biology. Bioinformatics 2006, 22:514-515.
    • (2006) Bioinformatics , vol.22 , pp. 514-515
    • Schmidt, H.1    Jirstrand, M.2
  • 19
    • 0026802334 scopus 로고
    • Metabolic control analysis: a survey of its theoretical and experimental development
    • Fell D.A. Metabolic control analysis: a survey of its theoretical and experimental development. Biochem. J. 1992, 286:313-330.
    • (1992) Biochem. J. , vol.286 , pp. 313-330
    • Fell, D.A.1
  • 20
    • 65649138437 scopus 로고    scopus 로고
    • Computational modeling of biochemical networks using COPASI
    • Mendes P., et al. Computational modeling of biochemical networks using COPASI. Methods Mol. Biol. 2009, 500:17-59.
    • (2009) Methods Mol. Biol. , vol.500 , pp. 17-59
    • Mendes, P.1
  • 21
    • 58149177166 scopus 로고    scopus 로고
    • Reactome knowledgebase of human biological pathways and processes
    • Matthews L., et al. Reactome knowledgebase of human biological pathways and processes. Nucleic Acids Res. 2009, 37:D619-D622.
    • (2009) Nucleic Acids Res. , vol.37
    • Matthews, L.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.