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Volumn 59, Issue 3, 2010, Pages 614-622

East tibetan lakes harbour novel clusters of picocyanobacteria as inferred from the 16S-23S rRNA internal transcribed spacer sequences

Author keywords

[No Author keywords available]

Indexed keywords

PROKARYOTA; SYNECHOCOCCUS;

EID: 77952532170     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-009-9603-z     Document Type: Article
Times cited : (19)

References (44)
  • 2
    • 0034993578 scopus 로고    scopus 로고
    • Is the 16S-23S rRNA internal transcribed spacer region a good tool for use in molecular systematics and population genetics? A case study in cyanobacteria
    • Boyer SL, Flechtner VR, Johansen JR (2001) Is the 16S-23S rRNA internal transcribed spacer region a good tool for use in molecular systematics and population genetics? A case study in cyanobacteria. Mol Biol Evol 18: 1057-1069.
    • (2001) Mol Biol Evol , vol.18 , pp. 1057-1069
    • Boyer, S.L.1    Flechtner, V.R.2    Johansen, J.R.3
  • 3
    • 0036966286 scopus 로고    scopus 로고
    • Freshwater autotrophic picoplankton: A review
    • Callieri C, Stockner JS (2002) Freshwater autotrophic picoplankton: a review. J Limnol 61: 1-14.
    • (2002) J Limnol , vol.61 , pp. 1-14
    • Callieri, C.1    Stockner, J.S.2
  • 4
    • 33644951496 scopus 로고    scopus 로고
    • Diverse and unique picocyanobacteria in Chesapeake Bay, revealed by 16S-23S rRNA internal transcribed spacer sequences
    • Chen F, Wang K, Kan JJ, Suzuki MT, Wommack KE (2006) Diverse and unique picocyanobacteria in Chesapeake Bay, revealed by 16S-23S rRNA internal transcribed spacer sequences. Appl Environ Microbiol 72: 2239-2243.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 2239-2243
    • Chen, F.1    Wang, K.2    Kan, J.J.3    Suzuki, M.T.4    Wommack, K.E.5
  • 5
    • 0141856627 scopus 로고    scopus 로고
    • Dispersal and phylogenetic diversity of nonmarine picocyanobacteria, inferred from 16S rRNA gene and cpcBA-intergenic spacer sequence analyses
    • Crosbie ND, Pöckl M, Weisse T (2003) Dispersal and phylogenetic diversity of nonmarine picocyanobacteria, inferred from 16S rRNA gene and cpcBA-intergenic spacer sequence analyses. Appl Environ Microbiol 69: 5716-5721.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 5716-5721
    • Crosbie, N.D.1    Pöckl, M.2    Weisse, T.3
  • 6
    • 0141866921 scopus 로고    scopus 로고
    • Rapid establishment of clonal isolates of freshwater autotrophic picoplankton by single-cell and single-colony sorting
    • Crosbie ND, Pöckl M, Weisse T (2003) Rapid establishment of clonal isolates of freshwater autotrophic picoplankton by single-cell and single-colony sorting. J Microbiol Methods 55: 361-370.
    • (2003) J Microbiol Methods , vol.55 , pp. 361-370
    • Crosbie, N.D.1    Pöckl, M.2    Weisse, T.3
  • 7
    • 0037259888 scopus 로고    scopus 로고
    • Ecosystem dependent adaptive radiations of picocyanobacteria inferred from 16S rRNA and ITS-1 sequence analysis
    • Ernst A, Becker S, Wollenzien U, Postius C (2003) Ecosystem dependent adaptive radiations of picocyanobacteria inferred from 16S rRNA and ITS-1 sequence analysis. Microbiology 149: 217-228.
    • (2003) Microbiology , vol.149 , pp. 217-228
    • Ernst, A.1    Becker, S.2    Wollenzien, U.3    Postius, C.4
  • 8
    • 0028984577 scopus 로고
    • Genetic diversity among Synechococcus spp. (cyanobacteria) isolated from the pelagial of Lake Constance
    • Ernst A, Marschall P, Postius C (1995) Genetic diversity among Synechococcus spp. (cyanobacteria) isolated from the pelagial of Lake Constance. FEMS Microbiol Ecol 17: 197-204.
    • (1995) FEMS Microbiol Ecol , vol.17 , pp. 197-204
    • Ernst, A.1    Marschall, P.2    Postius, C.3
  • 9
    • 0026439131 scopus 로고
    • Phototrophic picoplankton in Lakes Huron and Michigan: Abundance, distribution, composition, and contribution to biomass and production
    • Fahnenstiel GL, Carrick HJ (1992) Phototrophic picoplankton in Lakes Huron and Michigan: abundance, distribution, composition, and contribution to biomass and production. Can J Fish Aquat Sci 49: 379-388.
    • (1992) Can J Fish Aquat Sci , vol.49 , pp. 379-388
    • Fahnenstiel, G.L.1    Carrick, H.J.2
  • 10
    • 17844383150 scopus 로고    scopus 로고
    • Photoinhibition, UV-B and algal photosynthesis
    • S. E. Douglas, A. W. D. Lakum, and J. A. Raven (Eds.), the Netherlands: Kluwer Academic
    • Franklin LA, Osmond CB, Lakum AWD (2003) Photoinhibition, UV-B and algal photosynthesis. In: Douglas SE, Lakum AWD, Raven JA (eds) Photosynthesis in algae. Kluwer Academic, the Netherlands, pp 351-384.
    • (2003) Photosynthesis in Algae , pp. 351-384
    • Franklin, L.A.1    Osmond, C.B.2    Lakum, A.W.D.3
  • 11
    • 0037545904 scopus 로고    scopus 로고
    • Clade-specific 16S ribosomal DNA oligonucleotides reveal the predominance of a single marine Synechococcus clade throughout a stratified water column in the Red Sea
    • Fuller NJ, Marie MD, Partensky F, Vaulot D, Post AF, Scanlan DJ (2003) Clade-specific 16S ribosomal DNA oligonucleotides reveal the predominance of a single marine Synechococcus clade throughout a stratified water column in the Red Sea. Appl Environ Microbiol 69: 2430-2443.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 2430-2443
    • Fuller, N.J.1    Marie, M.D.2    Partensky, F.3    Vaulot, D.4    Post, A.F.5    Scanlan, D.J.6
  • 12
    • 0001134399 scopus 로고
    • Long-term preservation of picophytoplankton for counting by fluorescence microscopy
    • Hall JA (1991) Long-term preservation of picophytoplankton for counting by fluorescence microscopy. Br Phycol J 26: 169-176.
    • (1991) Br Phycol J , vol.26 , pp. 169-176
    • Hall, J.A.1
  • 13
    • 38149101581 scopus 로고    scopus 로고
    • Diversity and phylogeny of Baltic Sea picocyanobacteria inferred from their ITS and phycobiliprotein operons
    • Haverkamp T, Acinas SG, Doeleman M, Stomp M, Huisman J, Stal LJ (2008) Diversity and phylogeny of Baltic Sea picocyanobacteria inferred from their ITS and phycobiliprotein operons. Environ Microbiol 10: 174-188.
    • (2008) Environ Microbiol , vol.10 , pp. 174-188
    • Haverkamp, T.1    Acinas, S.G.2    Doeleman, M.3    Stomp, M.4    Huisman, J.5    Stal, L.J.6
  • 14
    • 63349098310 scopus 로고    scopus 로고
    • Colorful microdiversity of Synechococcus strains (picocyanobacteria) isolated from the Baltic Sea
    • Haverkamp T, Schouten D, Doeleman M, Wollenzien U, Huisman J, Stal LJ (2009) Colorful microdiversity of Synechococcus strains (picocyanobacteria) isolated from the Baltic Sea. ISME J 3: 397-408.
    • (2009) ISME J , vol.3 , pp. 397-408
    • Haverkamp, T.1    Schouten, D.2    Doeleman, M.3    Wollenzien, U.4    Huisman, J.5    Stal, L.J.6
  • 15
    • 0034129537 scopus 로고    scopus 로고
    • Comparison of conserved structural and regulatory domains within divergent 16S rRNA-23S rRNA spacer sequences of cyanobacteria
    • Iteman I, Rippka R, Tandeau de Marsac N, Herdman M (2000) Comparison of conserved structural and regulatory domains within divergent 16S rRNA-23S rRNA spacer sequences of cyanobacteria. Microbiology 146: 1275-1286.
    • (2000) Microbiology , vol.146 , pp. 1275-1286
    • Iteman, I.1    Rippka, R.2    Tandeau de Marsac, N.3    Herdman, M.4
  • 17
    • 0242405735 scopus 로고    scopus 로고
    • High resolution differentiation of cyanobacteria by using rRNA-internal transcribed spacer denaturing gradient gel electrophoresis
    • Janse I, Meima M, Edwin W, Karkinaal A, Zwart G (2003) High resolution differentiation of cyanobacteria by using rRNA-internal transcribed spacer denaturing gradient gel electrophoresis. Appl Environ Microbiol 69: 6634-6643.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 6634-6643
    • Janse, I.1    Meima, M.2    Edwin, W.3    Karkinaal, A.4    Zwart, G.5
  • 18
    • 0035709664 scopus 로고    scopus 로고
    • Identification of cultured and uncultured picocyanobacteria from a mesotrophic freshwater lake based on the partial sequences of 16S rDNA
    • Katano T, Fukui M, Watanabe Y (2001) Identification of cultured and uncultured picocyanobacteria from a mesotrophic freshwater lake based on the partial sequences of 16S rDNA. Limnology 2: 213-218.
    • (2001) Limnology , vol.2 , pp. 213-218
    • Katano, T.1    Fukui, M.2    Watanabe, Y.3
  • 19
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar S, Tamura K, Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5: 150-163.
    • (2004) Brief Bioinform , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 21
    • 0030661563 scopus 로고    scopus 로고
    • Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
    • Liu WT, Marsh TL, Cheng H, Forney LJ (1997) Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl Environ Microbiol 63: 4516-4522.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 4516-4522
    • Liu, W.T.1    Marsh, T.L.2    Cheng, H.3    Forney, L.J.4
  • 22
    • 67650812970 scopus 로고    scopus 로고
    • Photosynthetic and growth response of freshwater picocyanobacteria are strain-specific and sensitive to photoacclimation
    • doi:10.1093/plankt/fbn123
    • Moser M, Callieri C, Weisse T (2009) Photosynthetic and growth response of freshwater picocyanobacteria are strain-specific and sensitive to photoacclimation. J Plankton Res 31: 349-357. doi: 10. 1093/plankt/fbn123.
    • (2009) J Plankton Res , vol.31 , pp. 349-357
    • Moser, M.1    Callieri, C.2    Weisse, T.3
  • 23
    • 0031449424 scopus 로고    scopus 로고
    • Specific amplification and restriction polymorphisms of the cyanobacterial rRNA operon spacer region
    • Neilan BA, Stuart JL, Goodman AE, Cox PT, Hawkins PR (1997) Specific amplification and restriction polymorphisms of the cyanobacterial rRNA operon spacer region. Syst Appl Microbiol 20: 612-621.
    • (1997) Syst Appl Microbiol , vol.20 , pp. 612-621
    • Neilan, B.A.1    Stuart, J.L.2    Goodman, A.E.3    Cox, P.T.4    Hawkins, P.R.5
  • 24
    • 84986870589 scopus 로고
    • The use of DAPI for identifying and counting aquatic microflora
    • Porter KG, Feig YS (1980) The use of DAPI for identifying and counting aquatic microflora. Limnol Oceanogr 25: 943-947.
    • (1980) Limnol Oceanogr , vol.25 , pp. 943-947
    • Porter, K.G.1    Feig, Y.S.2
  • 25
    • 0032814949 scopus 로고    scopus 로고
    • Mechanism of dominance: Coexistence of picocyanobacterial genotypes in a freshwater ecosystem
    • Postius C, Ernst A (1999) Mechanism of dominance: coexistence of picocyanobacterial genotypes in a freshwater ecosystem. Arch Microbiol 172: 69-75.
    • (1999) Arch Microbiol , vol.172 , pp. 69-75
    • Postius, C.1    Ernst, A.2
  • 26
    • 0029660298 scopus 로고    scopus 로고
    • Persistence and genetic diversity among strains of phycoerythrin-rich cyanobacteria from the picoplankton of Lake Constance
    • Postius C, Ernst A, Kenter U, Boger P (1996) Persistence and genetic diversity among strains of phycoerythrin-rich cyanobacteria from the picoplankton of Lake Constance. J Plankton Res 18: 1159-1166.
    • (1996) J Plankton Res , vol.18 , pp. 1159-1166
    • Postius, C.1    Ernst, A.2    Kenter, U.3    Boger, P.4
  • 27
    • 0031710866 scopus 로고    scopus 로고
    • The twelfth Tansley lecture. Small is beautiful: The picophytoplankton
    • Raven JA (1998) The twelfth Tansley lecture. Small is beautiful: the picophytoplankton. Funct Ecol 12: 503-513.
    • (1998) Funct Ecol , vol.12 , pp. 503-513
    • Raven, J.A.1
  • 28
    • 0036200876 scopus 로고    scopus 로고
    • Resolution of Prochlorococcus and Synechococcus ecotypes by using 16S-23S ribosomal DNA internal transcribed spacer sequences
    • Rocap G, Distel DL, Waterbury JB, Chisholm SW (2002) Resolution of Prochlorococcus and Synechococcus ecotypes by using 16S-23S ribosomal DNA internal transcribed spacer sequences. Appl Environ Microbiol 68: 1180-1191.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 1180-1191
    • Rocap, G.1    Distel, D.L.2    Waterbury, J.B.3    Chisholm, S.W.4
  • 29
    • 64149130723 scopus 로고    scopus 로고
    • Bacterial 'cosmopolitanism' and importance of local environmental factors for community composition in remote high-altitude lakes
    • Sommaruga R, Casamayor E (2009) Bacterial 'cosmopolitanism' and importance of local environmental factors for community composition in remote high-altitude lakes. Freshw Biol 54: 994-1005.
    • (2009) Freshw Biol , vol.54 , pp. 994-1005
    • Sommaruga, R.1    Casamayor, E.2
  • 31
    • 0024194931 scopus 로고
    • Phototrophic picoplankton: An overview from marine and freshwater ecosystems
    • Stockner JG (1988) Phototrophic picoplankton: an overview from marine and freshwater ecosystems. Limnol Oceanogr 33: 765-775.
    • (1988) Limnol Oceanogr , vol.33 , pp. 765-775
    • Stockner, J.G.1
  • 32
    • 8544227657 scopus 로고    scopus 로고
    • Adaptive divergence in pigment composition promotes phytoplankton biodiversity
    • Stomp M, Huisman J, de Jongh F, Veraart AJ, Gerla D, Rijkeboer M et al (2004) Adaptive divergence in pigment composition promotes phytoplankton biodiversity. Nature 432: 104-107.
    • (2004) Nature , vol.432 , pp. 104-107
    • Stomp, M.1    Huisman, J.2    de Jongh, F.3    Veraart, A.J.4    Gerla, D.5    Rijkeboer, M.6
  • 34
    • 0028995014 scopus 로고
    • Canonical correspondence analysis and related multivariate methods in aquatic ecology
    • ter Braak CJF, Verdonschot PFM (1995) Canonical correspondence analysis and related multivariate methods in aquatic ecology. Aquat Sci 57: 255-289.
    • (1995) Aquat Sci , vol.57 , pp. 255-289
    • ter Braak, C.J.F.1    Verdonschot, P.F.M.2
  • 35
    • 0004142805 scopus 로고    scopus 로고
    • (in Chinese), Beijing: Science Press
    • Wang S, Dou H (1998) Lakes in China. Science Press, Beijing (in Chinese).
    • (1998) Lakes in China
    • Wang, S.1    Dou, H.2
  • 36
    • 0000181030 scopus 로고
    • Dynamic of autotrophic picoplankton in Lake Constance
    • Weisse T (1988) Dynamic of autotrophic picoplankton in Lake Constance. J Plankton Res 10: 1179-1188.
    • (1988) J Plankton Res , vol.10 , pp. 1179-1188
    • Weisse, T.1
  • 37
    • 0000410236 scopus 로고
    • Seasonal and interannual variation of autotrophic picoplankton in a large prealpine lake (Lake Constance)
    • Weisse T, Schweizer A (1991) Seasonal and interannual variation of autotrophic picoplankton in a large prealpine lake (Lake Constance). Verh Internat Verein Limnol 24: 821-825.
    • (1991) Verh Internat Verein Limnol , vol.24 , pp. 821-825
    • Weisse, T.1    Schweizer, A.2
  • 38
    • 33846864198 scopus 로고    scopus 로고
    • Biodiversity of freshwater microorganisms-achievements, problems, and perspectives
    • Weisse T (2006) Biodiversity of freshwater microorganisms-achievements, problems, and perspectives. Pol J Ecol 54: 633-652.
    • (2006) Pol J Ecol , vol.54 , pp. 633-652
    • Weisse, T.1
  • 39
  • 40
    • 33747359120 scopus 로고    scopus 로고
    • Bacterioplankton community composition along a salinity gradient of sixteen high-mountain lakes located on the Tibetan Plateau, China
    • Wu QL, Zwart G, Schauer M, Kamst-van Agterveldand MP, Hahn MW (2006) Bacterioplankton community composition along a salinity gradient of sixteen high-mountain lakes located on the Tibetan Plateau, China. Appl Environ Microbiol 72: 5478-5485.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 5478-5485
    • Wu, Q.L.1    Zwart, G.2    Schauer, M.3    Kamst-van agterveldand, M.P.4    Hahn, M.W.5
  • 41
    • 70350151424 scopus 로고    scopus 로고
    • Genetic diversity of eukaryotic plankton assemblages in Eastern Tibetan lakes differing by their salinity and altitude
    • Wu QL, Chatzinotas A, Wang JJ, Boenigk J (2009) Genetic diversity of eukaryotic plankton assemblages in Eastern Tibetan lakes differing by their salinity and altitude. Microb Ecol 58: 569-581.
    • (2009) Microb Ecol , vol.58 , pp. 569-581
    • Wu, Q.L.1    Chatzinotas, A.2    Wang, J.J.3    Boenigk, J.4
  • 42
    • 70449339400 scopus 로고    scopus 로고
    • Low taxa richness of bacterioplankton in high-altitude lakes of the Eastern Tibetan Plateau combined with unusual predominance of Bacteroidetes and Synechococcus
    • doi:10.1128/AEM1544-09
    • Xing P, Hahn MW, Wu QL (2009) Low taxa richness of bacterioplankton in high-altitude lakes of the Eastern Tibetan Plateau, with a predominance of Bacteroidetes and Synechococcus. Appl Environ Microbiol 75: 7017-7025.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 7017-7025
    • Xing, P.1    Hahn, M.W.2    Wu, Q.L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.