Selection pressures have caused genome-wide population differentiation of Anthoxanthum odoratum despite the potential for high gene flow

Journal of Evolutionary Biology

Volumn 23, Issue 4, 2010, Pages 776-782

  Freeland, J R ^a   Biss, P ^b   Conrad, K F ^a   Silvertown, J ^b  

^a TRENT UNIVERSITY   (Canada)

^b OPEN UNIVERSITY   (United Kingdom)

Author keywords

AFLPs; Anthoxanthum odoratum; Genetic drift; Natural selection; Park Grass Experiment

Indexed keywords

PLANT DNA;

EVOLUTIONARY THEORY; EXPERIMENTAL STUDY; GENE FLOW; GENETIC DIFFERENTIATION; GENETIC DRIFT; GENETIC MARKER; GENOME; MONOCOTYLEDON; NATURAL SELECTION;

ANIMAL; ARTICLE; ECOSYSTEM; EVOLUTION; GENE FLOW; GENETIC SELECTION; GENETICS; GENOTYPE; PHYLOGENY; PLANT GENOME; POACEAE; SOIL;

ANIMALS; DNA, PLANT; ECOSYSTEM; EVOLUTION; GENE FLOW; GENOME, PLANT; GENOTYPE; PHYLOGENY; POACEAE; SELECTION, GENETIC; SOIL;

ANTHOXANTHUM ODORATUM;

EID: 77952526234     PISSN: 1010061X     EISSN: 14209101     Source Type: Journal    
DOI: 10.1111/j.1420-9101.2010.01947.x     Document Type: Article

References (44)

1. Barton NH. Genetic hitchhiking. Phil. Trans. Royal. Soc. Lond. B 2000, 355:1553-1562.
2. Bonin A, Taberlet P, Miaud C, Pompanon F. Explorative genome scan to detect candidate loci for adaptation along a gradient of altitude in the common frog (Rana temporaria). Mol. Biol. Evol. 2006, 23:773-783.
3. Caballero A, Quesada H, Rolan-Alvarez E. Impact of amplified fragment length polymorphism size homoplasy on the estimation of population genetic diversity and the detection of selective loci. Genetics 2008, 179:539-554.
4. Davies HI, Snaydon RW. Physiological differences among populations of Anthoxanthum odoratum L. on the Park Grass Experiment, Rothamsted. I. Response to calcium. J. Appl. Ecol. 1973a, 10:33-45.
5. Davies HI, Snaydon RW. Physiological differences among populations of Anthoxanthum odoratum L. on the Park Grass Experiment, Rothamsted. II. Response to aluminium. J. Appl. Ecol. 1973b, 10:47-55.
6. Davies HI, Snaydon RW. Physiological differences among populations of Anthoxanthum odoratum L. on the Park Grass Experiment, Rothamsted. III. Response to phosphate. J. Appl. Ecol. 1974, 11:699-707.
7. Davies MS, Snaydon RW. Rapid population differentiation in a mosaic environment. III. Measures of selection pressures. Heredity 1976, 36:59-66.
8. Emelianov I, Marec F, Mallet J. Genomic evidence for divergence with gene flow in host races of the larch budmoth. Proc. Roy. Soc. B 2004, 271:97-105.
9. Endler JA. Gene flow and population differentiation. Science 1973, 179:243-250.
10. Excoffier L, Smouse PE, Quattro JM. Analysis of Molecular Variance Inferred from Metric Distances among DNA Haplotypes - Application to Human Mitochondrial-DNA Restriction Data. Genetics 1992, 131:479-491.
11. Excoffier L, Laval G, Schneider S. Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evol. Bioinf. Online 2005, 1:47-50.
12. Felsenstein J. PHYLIP (Phylogeny Inference Package) Version 3.6 2005, Department of Genome Sciences, University of Washington, Seattle
13. Frankham R, Ballou J, Briscoe D. Introduction to Conservation Genetics 2002, Cambridge University Press, Cambridge
14. Freeland JR. Molecular Ecology 2005, John Wiley & Sons, Chichester, UK
15. Gavrilets S, Vose A. Dynamic patterns of adaptive radiation. PNAS 2005, 102:18040-18045.
16. Gower JC. Some distance properties of latent root and vector methods used in multivariate analysis. Biometrika 1966, 53:325-338.
17. Grahame JW, Wilding CS, Butlin RK. Adaptation to a steep environmental gradient and an associated barrier to gene exchange in Littorina saxatilis. Evolution 2006, 60:268-278.
18. Holderegger R, Kamm U, Gugerli F. Adaptive vs. neutral genetic diversity: implications for landscape genetics. Landscape Ecol. 2006, 21:797-807.
19. Jaccard P. Nouvelle recherches sur la distribution florale. Bull. Soc. Vaud. Sci. Nat. 1908, 44:223-270.
20. Jensen JL, Bohonak AJ, Kelley ST. Isolation by distance, web service. BMC Genetics 2005, 6:13.
21. Joost S, Bonin A, Bruford MW, Després L, Conord C, Erhardt G, Taberlet P. A Spatial Analysis Method (SAM) to detect candidate loci for selection: towards a landscape genomics approach to adaptation. Mol. Ecol. 2007, 16:3955-3969.
22. Latta RG. Integrating patterns across multiple genetic markers to infer spatial processes. Landscape Ecol. 2006, 21:809-820.
23. Makinen HS, Cano M, Merila J. Identifying footprints of directional and balancing selection in marine and freshwater three-spined stickleback (Gasterosteus aculeatus) populations. Mol. Ecol. 2008, 17:3565-3582.
24. Meyer CL, Vitalis R, Saumitou-Laprade P, Castric V. Genomic pattern of adaptive divergence in Arabidopsis halleri, a model species for tolerance to heavy metal. Mol. Ecol. 2009, 18:2050-2062.
25. Nordborg M. Coalescent theory. Handbook of Statistical Genetics 2001, 179-212. Balding DJBishop MJCannings C. In, eds, pp, Wiley & Sons, Chichester, UK
26. Nosil P, Vines TH, Funk DJ. Perspective: reproductive isolation caused by natural selection against immigrants from divergent habitats. Evolution 2005, 59:705-719.
27. Nosil P, Funk DJ, Ortiz-Barrientos D. Divergent selection and heterogeneous genomic divergence. Mol. Ecol. 2009, 18:375-402.
28. Oetjen K, Reusch TBH. Genome scans detect consistent divergent selection among subtidal vs. intertidal populations of the marine angiosperm Zostera marina. Mol. Ecol. 2007, 16:5156-5167.
29. Guide to the Classical and other Long-term Experiments, Datasets and Sample Archive 2006, Premier Printers Ltd., Bury St Edmunds, Suffolk
30. Rundle HD, Nosil P. Ecological speciation. Ecol. Lett. 2005, 8:336-352.
31. Schluter D. The Ecology of Adaptive Radiation 2000, Oxford University Press, Oxford
32. Silvertown J, Servaes C, Biss P, Macleod D. Reinforcement of reproductive isolation between adjacent populations in the Park Grass Experiment. Heredity 2005, 95:198-205.
33. Silvertown J, Poulton P, Johnston E, Edwards G, Heard M, Biss PM. The Park Grass Experiment 1856-2006: its contribution to ecology. J. Ecol. 2006, 94:801-814.
34. Silvertown J, Biss PM, Freeland J. Community genetics: resource addition has opposing effects on genetic and species diversity in a 150-year experiment. Ecol. Lett. 2009, 12:165-170.
35. Snaydon RW. Rapid population differentiation in a mosaic environment. I. The response of Anthoxanthum odoratum to soils. Evolution 1970, 24:257-269.
36. Snaydon RW, Davies MS. Rapid population differentiation in a mosaic environment. II. Morphological variation in Anthoxanthum odoratum L. Evolution 1972, 26:390-405.
37. Snaydon RW, Davies MS. Rapid population differentiation in a mosaic environment. IV. Populations of Anthoxanthum odoratum L. at sharp boundaries. Heredity 1976, 36:9-25.
38. Streisfeld MA, Kohn JR. Contrasting patterns of floral and molecular variation across a cline in Mimulus aurantiacus. Evolution 2005, 59:2548-2559.
39. Tilman D, Dodd ME, Silvertown J, Poulton PR, Johnston AE, Crawley MJ. The Park Grass Experiment: insights from the most long-term ecological study. Long-term Experiments in Agricultural and Ecological Sciences 1994, 287-303. Leigh RA, Johnston AE, In, eds, pp, CAB International, Wallingford, UK
40. Thibert-Plante X, Hendry AP. Five questions on ecological speciation addressed with individual-based simulations. J. Evol. Biol. 2009, 22:109-123.
41. Tsumura Y, Kado T, Takahashi T, Tani N, Ujino-Ihara T, Iwata H. Genome scan to detect genetic structure and adaptive genes of natural populations of Cryptomeria japonica. Genetics 2007, 176:2393-2403.
42. Vitalis R, Dawson K, Boursot P, Belkhir K. DetSel 1.0: a computer program to detect markers responding to selection. J. Heredity 2003, 94:429-431.
43. Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res. 1995, 23:4407-4414.
44. Yeh FC, Yang RC, Boyle T, Ye ZH, Mao JX. POPGENE. The user-friendly shareware for population genetic analysis. 1997, Molecular Biology and Biotechnology Center, University of Alberta, Canada