메뉴 건너뛰기




Volumn 1, Issue 2, 2008, Pages

Genome Filtering Using Methylation-Sensitive Restriction Enzymes with Six Base Pair Recognition Sites

Author keywords

[No Author keywords available]

Indexed keywords


EID: 77952427398     PISSN: None     EISSN: 19403372     Source Type: Journal    
DOI: 10.3835/plantgenome2008.05.0245     Document Type: Article
Times cited : (19)

References (32)
  • 2
    • 0025879424 scopus 로고
    • Complementary DNA sequencing: Expressed sequence tags and human genome project
    • Adams, M.D., Kelley, J.M., Gocayne, J.D., Dubnick, M., Polymeropoulus, M.H., Xiao, H., Merril, C.R., Wu, A., Olde, B., Moreno, R.F., Kerlavage, A.R., McCombie, W.R., and Venter, J.C. 1991. Complementary DNA sequencing: Expressed sequence tags and human genome project. Science 252:1651–1656.10.1126/science.2047873. http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=agrocropsoil&KeyUT=A1991FT11400035&DestLinkType=FullRecord&DestApp=WOS_CPL&UsrCustomerID=523bbf5d2a868de7bbaeea0bc70ec0e4
    • (1991) Science , vol.252 , pp. 1651-1656
    • Adams, M.D.1    Kelley, J.M.2    Gocayne, J.D.3    Dubnick, M.4    Polymeropoulus, M.H.5    Xiao, H.6    Merril, C.R.7    Wu, A.8    Olde, B.9    Moreno, R.F.10    Kerlavage, A.R.11    McCombie, W.R.12    Venter, J.C.13
  • 3
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403–410.10.1006/jmbi.1990.9999. http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=agrocropsoil&KeyUT=A1990ED16700008&DestLinkType=FullRecord&DestApp=WOS_CPL&UsrCustomerID=523bbf5d2a868de7bbaeea0bc70ec0e4
    • (1990) J. Mol. Biol. , vol.215 , pp. 403-410
    • Altschul, S.F.1    Gish, W.2    Miller, W.3    Myers, E.W.4    Lipman, D.J.5
  • 4
    • 51649150815 scopus 로고
    • Nuclear DNA content of some important plant species
    • Arumuganathan, K., and Earle, E.D. 1991. Nuclear DNA content of some important plant species. Plant Mol. Biol. Rep. 9:208–218.10.1007/BF02672069
    • (1991) Plant Mol. Biol. Rep. , vol.9 , pp. 208-218
    • Arumuganathan, K.1    Earle, E.D.2
  • 5
    • 24644437451 scopus 로고    scopus 로고
    • Reduced representation sequencing: A success in maize and a promise for other plant genomes
    • Barbazuk, W.B., Bedell, J.A., and Rabinowicz, P.D. 2005. Reduced representation sequencing: A success in maize and a promise for other plant genomes. Bioessays 27:839–848.10.1002/bies.20262. http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=agrocropsoil&KeyUT=000230879400009&DestLinkType=FullRecord&DestApp=WOS_CPL&UsrCustomerID=523bbf5d2a868de7bbaeea0bc70ec0e4
    • (2005) Bioessays , vol.27 , pp. 839-848
    • Barbazuk, W.B.1    Bedell, J.A.2    Rabinowicz, P.D.3
  • 6
    • 0028485631 scopus 로고
    • Active maize genes are unmodified and flanked by diverse classes of modified, highly repetitive DNA
    • Bennetzen, J.L., Schrick, K., Springer, P.S., Brown, W.E., and SanMiguel, P. 1994. Active maize genes are unmodified and flanked by diverse classes of modified, highly repetitive DNA. Genome 37:565–576.10.1139/g94-081. http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=agrocropsoil&KeyUT=A1994PE34900008&DestLinkType=FullRecord&DestApp=WOS_CPL&UsrCustomerID=523bbf5d2a868de7bbaeea0bc70ec0e4
    • (1994) Genome , vol.37 , pp. 565-576
    • Bennetzen, J.L.1    Schrick, K.2    Springer, P.S.3    Brown, W.E.4    SanMiguel, P.5
  • 7
    • 0345051044 scopus 로고    scopus 로고
    • Normalization and subtraction: Two approaches to facilitate gene discovery
    • Bonaldo, M.F., Lennon, G., and Soares, M.B. 1996. Normalization and subtraction: Two approaches to facilitate gene discovery. Genome Res. 6:791–806.10.1101/gr.6.9.791. http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=agrocropsoil&KeyUT=A1996VJ57500004&DestLinkType=FullRecord&DestApp=WOS_CPL&UsrCustomerID=523bbf5d2a868de7bbaeea0bc70ec0e4
    • (1996) Genome Res. , vol.6 , pp. 791-806
    • Bonaldo, M.F.1    Lennon, G.2    Soares, M.B.3
  • 8
    • 0036010790 scopus 로고    scopus 로고
    • A high-density cytogentic map of the Aegilops tauschii genome incorporating retrotransposons and defense related genes: Insights into cereal chromosome structure and function
    • Boyko, E., Kalendar, R., Korzun, V., Fellers, J.P., Korol, A., Schulman, A.H., and Gill, B.S. 2002. A high-density cytogentic map of the Aegilops tauschii genome incorporating retrotransposons and defense related genes: Insights into cereal chromosome structure and function. Plant Mol. Biol. 48:767–790.10.1023/A:1014831511810
    • (2002) Plant Mol. Biol. , vol.48 , pp. 767-790
    • Boyko, E.1    Kalendar, R.2    Korzun, V.3    Fellers, J.P.4    Korol, A.5    Schulman, A.H.6    Gill, B.S.7
  • 9
    • 0023968729 scopus 로고
    • Gene mapping with recombinant inbreds in maize
    • Burr, B., Furr, F.A., Thompson, K.H., Albertson, M.C., and Stuber, C.W. 1988. Gene mapping with recombinant inbreds in maize. Genetics 118:519–526.http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=agrocropsoil&KeyUT=A1988M440400014&DestLinkType=FullRecord&DestApp=WOS_CPL&UsrCustomerID=523bbf5d2a868de7bbaeea0bc70ec0e4
    • (1988) Genetics , vol.118 , pp. 519-526
    • Burr, B.1    Furr, F.A.2    Thompson, K.H.3    Albertson, M.C.4    Stuber, C.W.5
  • 10
    • 0025035727 scopus 로고
    • Genetic and sequence organization of the mcrBC locus of Escherichia coli K-12
    • Dila, D., Sutherland, E., Moran, L., Slatko, B., and Raleigh, E.A. 1990. Genetic and sequence organization of the mcrBC locus of Escherichia coli K-12. J. Bacteriol. 172:4888–4900.http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=agrocropsoil&KeyUT=A1990DX47800020&DestLinkType=FullRecord&DestApp=WOS_CPL&UsrCustomerID=523bbf5d2a868de7bbaeea0bc70ec0e4
    • (1990) J. Bacteriol. , vol.172 , pp. 4888-4900
    • Dila, D.1    Sutherland, E.2    Moran, L.3    Slatko, B.4    Raleigh, E.A.5
  • 11
    • 25844507219 scopus 로고    scopus 로고
    • Gene enrichment in maize with hypomethylated partial restriction (HMPR) libraries
    • Emberton, J., Ma, J., Yuan, Y., SanMiguel, P., and Bennetzen, J.L. 2005. Gene enrichment in maize with hypomethylated partial restriction (HMPR) libraries. Genome Res. 15:1441–1446.10.1101/gr.3362105. http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=agrocropsoil&KeyUT=000232436800015&DestLinkType=FullRecord&DestApp=WOS_CPL&UsrCustomerID=523bbf5d2a868de7bbaeea0bc70ec0e4
    • (2005) Genome Res. , vol.15 , pp. 1441-1446
    • Emberton, J.1    Ma, J.2    Yuan, Y.3    SanMiguel, P.4    Bennetzen, J.L.5
  • 12
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using Phred. II. Error probabilities
    • Ewing, B., and Green, P. 1998. Base-calling of automated sequencer traces using Phred. II. Error probabilities. Genome Res. 8:186–194.http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=agrocropsoil&KeyUT=000072838200007&DestLinkType=FullRecord&DestApp=WOS_CPL&UsrCustomerID=523bbf5d2a868de7bbaeea0bc70ec0e4
    • (1998) Genome Res. , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 13
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using Phred. I. Accuracy assessment
    • Ewing, B., Hillier, L., Wendl, M.C., and Green, P. 1998. Base-calling of automated sequencer traces using Phred. I. Accuracy assessment. Genome Res. 8:175–185.http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=agrocropsoil&KeyUT=000072838200006&DestLinkType=FullRecord&DestApp=WOS_CPL&UsrCustomerID=523bbf5d2a868de7bbaeea0bc70ec0e4
    • (1998) Genome Res. , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 14
    • 0001475768 scopus 로고
    • The molecular characterization and organization of plant chromosomal DNA sequences
    • Flavell, R.B. 1980. The molecular characterization and organization of plant chromosomal DNA sequences. Ann. Rev. Plant Physiol. 31:569–596.10.1146/annurev.pp.31.060180.003033
    • (1980) Ann. Rev. Plant Physiol. , vol.31 , pp. 569-596
    • Flavell, R.B.1
  • 16
    • 0025764591 scopus 로고
    • A genetic linkage map of Triticum tauschii (DD) and its relationship to the D genome of bread wheat (AABBDD)
    • Gill, K.S., Lubbers, E.L., Gill, B.S., Raupp, W.J., and Cox, T.S. 1991. A genetic linkage map of Triticum tauschii (DD) and its relationship to the D genome of bread wheat (AABBDD). Genome 34:362–374.http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=agrocropsoil&KeyUT=A1991FV04700008&DestLinkType=FullRecord&DestApp=WOS_CPL&UsrCustomerID=523bbf5d2a868de7bbaeea0bc70ec0e4
    • (1991) Genome , vol.34 , pp. 362-374
    • Gill, K.S.1    Lubbers, E.L.2    Gill, B.S.3    Raupp, W.J.4    Cox, T.S.5
  • 17
    • 0019417156 scopus 로고
    • Sequence specificity of methylation in higher plant DNA
    • Gruenbaum, Y., Naveh-Many, T., Cedar, H., and Razin, A. 1981. Sequence specificity of methylation in higher plant DNA. Nature 292:860–862.10.1038/292860a0. http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=agrocropsoil&KeyUT=A1981MC82800055&DestLinkType=FullRecord&DestApp=WOS_CPL&UsrCustomerID=523bbf5d2a868de7bbaeea0bc70ec0e4
    • (1981) Nature , vol.292 , pp. 860-862
    • Gruenbaum, Y.1    Naveh-Many, T.2    Cedar, H.3    Razin, A.4
  • 18
    • 0025732936 scopus 로고
    • Recombination at the Rp1 locus of maize
    • Hulbert, S.H., and Bennetzen, J.L. 1991. Recombination at the Rp1 locus of maize. Mol. Gen. Genet. 226:377–382.10.1007/BF00273926
    • (1991) Mol. Gen. Genet. , vol.226 , pp. 377-382
    • Hulbert, S.H.1    Bennetzen, J.L.2
  • 19
    • 0035866187 scopus 로고    scopus 로고
    • Diversity arrays: A solid state technology for sequence information independent genotyping
    • Jaccoud, D., Peng, K., Feinstein, D., and Kilian, A. 2001. Diversity arrays: A solid state technology for sequence information independent genotyping. Nucleic Acids Res. 24:E25.10.1093/nar/29.4.e25
    • (2001) Nucleic Acids Res. , vol.24
    • Jaccoud, D.1    Peng, K.2    Feinstein, D.3    Kilian, A.4
  • 20
    • 33644836398 scopus 로고    scopus 로고
    • ot-based gene enrichment in wheat (Triticum aestivum L.)
    • ot-based gene enrichment in wheat (Triticum aestivum L.). Genome 48:1120–1126.10.1139/g05-080. http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=agrocropsoil&KeyUT=000234473000020&DestLinkType=FullRecord&DestApp=WOS_CPL&UsrCustomerID=523bbf5d2a868de7bbaeea0bc70ec0e4
    • (2005) Genome , vol.48 , pp. 1120-1126
    • Lamoureux, D.1    Peterson, D.G.2    Li, W.3    Fellers, J.P.4    Gill, B.S.5
  • 21
    • 8444242268 scopus 로고    scopus 로고
    • Sequence composition, organization, and evolution of the core Triticeae genome
    • Li, W., Zhang, P., Fellers, J.P., Friebe, B., and Gill, B.S. 2004. Sequence composition, organization, and evolution of the core Triticeae genome. Plant J. 40:500–511.10.1111/j.1365-313X.2004.02228.x. http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=agrocropsoil&KeyUT=000224632700005&DestLinkType=FullRecord&DestApp=WOS_CPL&UsrCustomerID=523bbf5d2a868de7bbaeea0bc70ec0e4
    • (2004) Plant J. , vol.40 , pp. 500-511
    • Li, W.1    Zhang, P.2    Fellers, J.P.3    Friebe, B.4    Gill, B.S.5
  • 22
    • 0000767870 scopus 로고
    • Molecular mapping in rice chromosomes
    • McCouch, S.R., Kochert, G., Yu, Z.H., Wang, Z.Y., Khush, G.S., Coffman, W.R., and Tanksley, S.D. 1988. Molecular mapping in rice chromosomes. Theor. Appl. Genet. 76:815–829.10.1007/BF00273666. http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=agrocropsoil&KeyUT=A1988R487200003&DestLinkType=FullRecord&DestApp=WOS_CPL&UsrCustomerID=523bbf5d2a868de7bbaeea0bc70ec0e4
    • (1988) Theor. Appl. Genet. , vol.76 , pp. 815-829
    • McCouch, S.R.1    Kochert, G.2    Yu, Z.H.3    Wang, Z.Y.4    Khush, G.S.5    Coffman, W.R.6    Tanksley, S.D.7
  • 23
    • 85168863386 scopus 로고    scopus 로고
    • Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome
    • Meyers, B.C., Tingey, S.V., and Morgante, M. 2001. Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome. Plant J. 15:211–230.10.1046/j.1365-313X.1998.00200.x
    • (2001) Plant J. , vol.15 , pp. 211-230
    • Meyers, B.C.1    Tingey, S.V.2    Morgante, M.3
  • 24
    • 0346362490 scopus 로고    scopus 로고
    • Maize genome sequencing by methylation filtration
    • Palmer, L.E., Rabinowicz, P.D., O';Shaughnessy, A.L., Balija, V.S., Nascimeto, L.U., Dike, S., de la Bastide, M., Martinssen, R.A., and McCombie, W.R. 2003. Maize genome sequencing by methylation filtration. Science 302:2115–2117.10.1126/science.1091265. http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=agrocropsoil&KeyUT=000187385200042&DestLinkType=FullRecord&DestApp=WOS_CPL&UsrCustomerID=523bbf5d2a868de7bbaeea0bc70ec0e4
    • (2003) Science , vol.302 , pp. 2115-2117
    • Palmer, L.E.1    Rabinowicz, P.D.2    Shaughnessy, A.L.3    Balija, V.S.4    Nascimeto, L.U.5    Dike, S.6    de la Bastide, M.7    Martinssen, R.A.8    McCombie, W.R.9
  • 25
    • 33645756174 scopus 로고    scopus 로고
    • Reduced representation strategies and their application to plant genomes
    • Meksem, K., Kahl, G., (ed.), Wiley-VCH Verlag GmbH and Co., Weinheim, Germany
    • Peterson, D.G. 2005. Reduced representation strategies and their application to plant genomes. In Meksem, K., and Kahl, G. (ed.) The handbook of plant genome mapping. Genetic and physical mapping. Wiley-VCH Verlag GmbH and Co., Weinheim, Germany.
    • (2005) The handbook of plant genome mapping. Genetic and physical mapping
    • Peterson, D.G.1
  • 26
    • 0036110295 scopus 로고    scopus 로고
    • ot Analysis, DNA cloning, and high-throughput sequencing facilitates genome characterization and gene discovery
    • ot Analysis, DNA cloning, and high-throughput sequencing facilitates genome characterization and gene discovery. Genome Res. 12:795–807.10.1101/gr.226102. http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=agrocropsoil&KeyUT=000175556500014&DestLinkType=FullRecord&DestApp=WOS_CPL&UsrCustomerID=523bbf5d2a868de7bbaeea0bc70ec0e4
    • (2002) Genome Res. , vol.12 , pp. 795-807
    • Peterson, D.G.1    Schulze, S.R.2    Sciara, E.B.3    Lee, S.A.4    Bowers, J.E.5    Nagel, A.6    Jiang, N.7    Tibbitts, D.C.8    Wessler, S.R.9    Patterson, A.H.10
  • 27
    • 0036843242 scopus 로고    scopus 로고
    • Efficient capture of unique sequences from eukaryotic genomes
    • Peterson, D.G., Wessler, S.R., and Paterson, A.H. 2002b. Efficient capture of unique sequences from eukaryotic genomes. Trends Gen. 18:547–550.10.1016/S0168-9525(02)02764-6
    • (2002) Trends Gen. , vol.18 , pp. 547-550
    • Peterson, D.G.1    Wessler, S.R.2    Paterson, A.H.3
  • 29
    • 0022872027 scopus 로고
    • Escherichia coli K-12 restricts DNA containing 5-methylcytosine
    • Raleigh, E.A., and Wilson, G. 1986. Escherichia coli K-12 restricts DNA containing 5-methylcytosine. Proc. Natl. Acad. Sci. USA 83:9070–9074.10.1073/pnas.83.23.9070
    • (1986) Proc. Natl. Acad. Sci. USA , vol.83 , pp. 9070-9074
    • Raleigh, E.A.1    Wilson, G.2
  • 30
    • 0004136246 scopus 로고    scopus 로고
    • Sambrook, J., Russel, D.W., (ed.), 3rd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
    • Sambrook, J. 2001. Molecular cloning: A laboratory manual. In Sambrook, J., and Russel, D.W. (ed.) 3rd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
    • (2001) Molecular cloning: A laboratory manual
    • Sambrook, J.1
  • 31
    • 16544395542 scopus 로고    scopus 로고
    • Utility of different gene enrichment approaches toward identifying and sequencing the maize gene space
    • Springer, N.M., Xu, X., and Barbazuk, W.B. 2004. Utility of different gene enrichment approaches toward identifying and sequencing the maize gene space. Plant Phys. 136:3023–3033.10.1104/pp.104.043323
    • (2004) Plant Phys. , vol.136 , pp. 3023-3033
    • Springer, N.M.1    Xu, X.2    Barbazuk, W.B.3
  • 32
    • 0036737324 scopus 로고    scopus 로고
    • Methylation-spanning linker libraries link gene-rich regions and identify epigenetic boundaries in Zea mays
    • Yuan, Y., SanMiguel, P.J., and Bennetzen, J.L. 2002. Methylation-spanning linker libraries link gene-rich regions and identify epigenetic boundaries in Zea mays. Genome Res. 12:1345–1349.10.1101/gr.185902. http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=agrocropsoil&KeyUT=000177964700005&DestLinkType=FullRecord&DestApp=WOS_CPL&UsrCustomerID=523bbf5d2a868de7bbaeea0bc70ec0e4
    • (2002) Genome Res. , vol.12 , pp. 1345-1349
    • Yuan, Y.1    SanMiguel, P.J.2    Bennetzen, J.L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.