NMR characterization of the interaction of the salmonella type III secretion system protein SipD and bile salts

Biochemistry

Volumn 49, Issue 19, 2010, Pages 4220-4226

  Wang, Yu ^a   Nordhues, Bryce A ^a   Zhong, Dalian ^a   De Guzman, Roberto N ^a  

^a UNIVERSITY OF KANSAS   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BILE SALTS; CHEMICAL SHIFT PERTURBATIONS; COILED COIL; COMPUTER MODELING; CRITICAL COMPONENT; DEOXYCHOLATE; ENVIRONMENTAL SENSOR; N-TERMINAL DOMAINS; TYPE III SECRETION SYSTEM; VIRULENCE PROTEINS;

BINDING ENERGY; BINDING SITES; BODY FLUIDS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PROTEINS; SALMONELLA;

SALTS;

BACTERIAL PROTEIN; BILE SALT; CHENODEOXYCHOLIC ACID; DEOXYCHOLIC ACID; SIPD PROTEIN; TAURODEOXCHOLATE; TRYPTOPHAN; UNCLASSIFIED DRUG;

ARTICLE; BINDING SITE; NONHUMAN; NUCLEAR MAGNETIC RESONANCE; PREDICTION; PRIORITY JOURNAL; PROTEIN INTERACTION; PROTON NUCLEAR MAGNETIC RESONANCE; SALMONELLA; TYPE III SECRETION SYSTEM;

ANTIGENS, BACTERIAL; BACTERIAL PROTEINS; BILE ACIDS AND SALTS; MEMBRANE PROTEINS; MODELS, MOLECULAR; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN CONFORMATION; SALMONELLA;

SALMONELLA; SHIGELLA;

EID: 77952381219     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/bi100335u     Document Type: Article

References (25)

1. Cornelis, G. R. (2006) The type III secretion injectisome Nat. Rev. Microbiol. 4, 811-825
2. Mueller, C. A., Broz, P., Muller, S. A., Ringler, P., Erne-Brand, F., Sorg, I., Kuhn, M., Engel, A., and Cornelis, G. R. (2005) The V-antigen of Yersinia forms a distinct structure at the tip of injectisome needles Science 310, 674-676
3. Espina, M., Olive, A. J., Kenjale, R., Moore, D. S., Ausar, S. F., Kaminski, R. W., Oaks, E. V., Middaugh, C. R., Picking, W. D., and Picking, W. L. (2006) IpaD localizes to the tip of the type III secretion system needle of Shigella flexneri Infect. Immun. 74, 4391-4400
4. Picking, W. L., Nishioka, H., Hearn, P. D., Baxter, M. A., Harrington, A. T., Blocker, A., and Picking, W. D. (2005) IpaD of Shigella flexneri is independently required for regulation of Ipa protein secretion and efficient insertion of IpaB and IpaC into host membranes Infect. Immun. 73, 1432-1440
5. Stevens, M. P., Haque, A., Atkins, T., Hill, J., Wood, M. W., Easton, A., Nelson, M., Underwood-Fowler, C., Titball, R. W., Bancroft, G. J., and Galyov, E. E. (2004) Attenuated virulence and protective efficacy of a Burkholderia pseudomallei bsa type III secretion mutant in murine models of melioidosis Microbiology 150, 2669-2676
6. Kaniga, K., Trollinger, D., and Galan, J. E. (1995) Identification of two targets of the type III protein secretion system encoded by the inv and spa loci of Salmonella typhimurium that have homology to the Shigella IpaD and IpaA proteins J. Bacteriol. 177, 7078-7085
7. Stensrud, K. F., Adam, P. R., La Mar, C. D., Olive, A. J., Lushington, G. H., Sudharsan, R., Shelton, N. L., Givens, R. S., Picking, W. L., and Picking, W. D. (2008) Deoxycholate interacts with IpaD of Shigella flexneri in inducing the recruitment of IpaB to the type III secretion apparatus needle tip J. Biol. Chem. 283, 18646-18654
8. Olive, A. J., Kenjale, R., Espina, M., Moore, D. S., Picking, W. L., and Picking, W. D. (2007) Bile salts stimulate recruitment of IpaB to the Shigella flexneri surface, where it colocalizes with IpaD at the tip of the type III secretion needle Infect. Immun. 75, 2626-2629
9. Prouty, A. M. and Gunn, J. S. (2000) Salmonella enterica serovar typhimurium invasion is repressed in the presence of bile Infect. Immun. 68, 6763-6769
10. Prouty, A. M., Brodsky, I. E., Manos, J., Belas, R., Falkow, S., and Gunn, J. S. (2004) Transcriptional regulation of Salmonella enterica serovar Typhimurium genes by bile FEMS Immunol. Med. Microbiol. 41, 177-185
11. Johnson, S., Roversi, P., Espina, M., Olive, A., Deane, J. E., Birket, S., Field, T., Picking, W. D., Blocker, A. J., Galyov, E. E., Picking, W. L., and Lea, S. M. (2007) Self-chaperoning of the type III secretion system needle tip proteins IpaD and BipD J. Biol. Chem. 282, 4035-4044
12. Geisbrecht, B. V., Bouyain, S., and Pop, M. (2006) An optimized system for expression and purification of secreted bacterial proteins Protein Expression Purif. 46, 23-32
13. Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., and Bax, A. (1995) NMRPipe: a multidimensional spectral processing system based on UNIX pipes J. Biomol. NMR 6, 277-293
14. Johnson, B. A. (2004) Using NMRView to visualize and analyze the NMR spectra of macromolecules Methods Mol. Biol. 278, 313-352
15. Czisch, M. and Boelens, R. (1998) Sensitivity enhancement in the TROSY experiment J. Magn. Reson. 134, 158-160
16. Salzmann, M., Pervushin, K., Wider, G., Senn, H., and Wuthrich, K. (1998) TROSY in triple-resonance experiments: new perspectives for sequential NMR assignment of large proteins Proc. Natl. Acad. Sci. U.S.A. 95, 13585-13590
17. Salzmann, M., Wider, G., Pervushin, K., Senn, H., and Wuthrich, K. (1999) TROSY-type triple-resonance experiments for sequential NMR assignments of large proteins J. Am. Chem. Soc. 121, 844-848
18. Erskine, P. T., Knight, M. J., Ruaux, A., Mikolajek, H., Sang, N. W., Withers, J., Gill, R., Wood, S. P., Wood, M., Fox, G. C., and Cooper, J. B. (2006) High resolution structure of BipD: an invasion protein associated with the type III secretion system of Burkholderia pseudomallei J. Mol. Biol. 363, 125-136
19. Simonovic, B. R. and Momirovic, M. (1997) Determination of critical micelle concentration of bile acid salts by micro-calorimetric titration Mikrochim. Acta 127, 101-104
20. DeLong, L. J. and Nichols, J. W. (1996) Time-resolved fluorescence anisotropy of fluorescent-labeled lysophospholipid and taurodeoxycholate aggregates Biophys. J. 70, 1466-1471
21. van Velkinburgh, J. C. and Gunn, J. S. (1999) PhoP-PhoQ-regulated loci are required for enhanced bile resistance in Salmonella spp. Infect. Immun. 67, 1614-1622
22. Lara-Tejero, M. and Galan, J. E. (2009) Salmonella enterica serovar typhimurium pathogenicity island 1-encoded type III secretion system translocases mediate intimate attachment to nonphagocytic cells Infect. Immun. 77, 2635-2642
23. Karavolos, M. H., Roe, A. J., Wilson, M., Henderson, J., Lee, J. J., Gally, D. L., and Khan, C. M. (2005) Type III secretion of the Salmonella effector protein SopE is mediated via an N-terminal amino acid signal and not an mRNA sequence J. Bacteriol. 187, 1559-1567
24. Arnold, R., Brandmaier, S., Kleine, F., Tischler, P., Heinz, E., Behrens, S., Niinikoski, A., Mewes, H. W., Horn, M., and Rattei, T. (2009) Sequence-based prediction of type III secreted proteins PLoS Pathog. 5, e1000376
25. Grzesiek, S., Bax, A., Clore, G. M., Gronenborn, A. M., Hu, J. S., Kaufman, J., Palmer, I., Stahl, S. J., and Wingfield, P. T. (1996) The solution structure of HIV-1 Nef reveals an unexpected fold and permits delineation of the binding surface for the SH3 domain of Hck tyrosine protein kinase Nat. Struct. Biol. 3, 340-345