Model of ionic currents through microtubule nanopores and the lumen

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 81, Issue 5, 2010, Pages

  Freedman, Holly ^a   Rezania, Vahid ^a,b   Priel, Avner ^a,c   Carpenter, Eric ^a   Noskov, Sergei Y ^d   Tuszynski, Jack A ^a  

^a UNIVERSITY OF ALBERTA   (Canada)

^b MACEWAN UNIVERSITY   (Canada)

^c Israel Institute for Advanced Research   (Israel)

^d UNIVERSITY OF CALGARY   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

BROWNIAN DYNAMICS SIMULATIONS; BULK SOLUTIONS; C-TERMINAL TAIL; CELLULAR ENVIRONMENT; CYLINDRICAL STRUCTURE; CYTOSKELETAL FILAMENTS; ELECTRICAL CIRCUIT MODELS; ELECTRICAL TRANSMISSION; EXTERNAL POTENTIAL; EXTERNAL VOLTAGES; I - V CURVE; INTERNAL VOLTAGE; IONIC CURRENT; MICROTUBULES; PERSISTENT CURRENTS; POTENTIAL GRADIENTS;

BROWNIAN MOVEMENT;

NANOPORES;

EID: 77952373541     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.81.051912     Document Type: Article

References (60)

1. J. A. Tuszynski, A. Priel, J. A. Brown, H. F. Cantiello, and J. M. and Dixon, Electronic and Ionic Conductivities of Microtubules and Actin Filaments, Their Consequences for Cell Signaling and Applications to Bioelectronics (Taylor and Francis, London, 2007).
2. A. Priel and J. A. Tuszyński, EPL 83, 68004 (2008). 10.1209/0295-5075/83/68004
3. A. Priel, A. J. Ramos, J. A. Tuszynski, and H. F. Cantiello, Biophys. J. 90, 4639 (2006). 10.1529/biophysj.105.078915
4. I. Minoura and E. Muto, Biophys. J. 90, 3739 (2006). 10.1529/biophysj. 105.071324
5. E. C. Lin and H. F. Cantiello, Biophys. J. 65, 1371 (1993). 10.1016/S0006-3495(93)81188-3
6. See supplementary material at http://link.aps.org/supplemental/10.1103/ PhysRevE.81.051912 for additional computational details and figures.
7. H. Li, D. J. DeRosier, W. V. Nicholson, E. Nogales, and K. H. Downing, Structure 10, 1317 (2002). 10.1016/S0969-2126(02)00827-4
8. O. S. Smart, J. M. Goodfellow, and B. A. Wallace, Biophys. J. 65, 2455 (1993). 10.1016/S0006-3495(93)81293-1
9. S. J. Weiner, P. A. Kollman, D. A. Case, U. C. Singh, C. Ghio, G. Alagona, S. Profeta, Jr., and P. Weiner, J. Am. Chem. Soc. 106, 765 (1984). 10.1021/ja00315a051
10. J. F. Diaz, I. Barasoain, and J. M. Andreu, J. Biol. Chem. 278, 8407 (2003). 10.1074/jbc.M211163200
11. J. L. Ross and D. K. Fygenson, Biophys. J. 84, 3959 (2003). 10.1016/S0006-3495(03)75123-6
12. R. M. Buey, Nat. Chem. Biol. 3, 117 (2007). 10.1038/nchembio853
13. S. Kar, J. Fan, M. J. Smith, M. Goedert, and L. A. Amos, EMBO J. 22, 70 (2003). 10.1093/emboj/cdg001
14. S. Kar, G. J. Florence, I. Paterson, and L. A. Amos, FEBS Lett. 539, 34 (2003). 10.1016/S0014-5793(03)00181-9
15. D. K. Meyer, C. Olenik, F. Hofmann, H. Barth, J. Leemhuis, I. Brunig, K. Aktories, and W. Norenberg, J. Neurosci. 20, 6743 (2000).
16. N. Montalbetti, Q. Li, Y. Wu, X. Z. Chen, and H. F. Cantiello, J. Physiol. (London) 579, 717 (2007). 10.1113/jphysiol.2006.125583
17. H. F. Cantiello, N. Montalbetti, and Q. Li, Curr. Top. Membr. 59, 233 (2007). 10.1016/S1063-5823(06)59010-6
18. V. A. Maltsev and A. I. Undrovinas, Am. J. Physiol. Heart Circ. Physiol. 273, H1832 (1997).
19. S. L. Mironov and D. W. Richter, Eur. J. Neurosci. 11, 1831 (1999). 10.1046/j.1460-9568.1999.00584.x
20. B. D. Johnson and L. Byerly, Pflügers Arch. 429, 14 (1994). 10.1007/BF02584025
21. B. D. Johnson and L. Byerly, Neuron 10, 797 (1993). 10.1016/0896-6273(93) 90196-X
22. K. Furukawa and M. P. Mattson, Brain Res. 689, 141 (1995). 10.1016/0006-8993(95)00537-Z
23. K. Furukawa, J. Neurochem. 87, 427 (2003). 10.1046/j.1471-4159.2003. 02020.x
24. A. M. Gomez, B. G. Kerfant, and G. Vassort, Circ. Res. 86, 30 (2000).
25. F. C. Howarth, S. C. Calaghan, M. R. Boyett, and E. White, J. Physiol. (London) 516, 409 (1999). 10.1111/j.1469-7793.1999.0409v.x
26. X. Z. Chen, Q. Li, Y. Wu, G. Liang, C. J. Lara, and H. F. Cantiello, FEBS J. 275, 4675 (2008). 10.1111/j.1742-4658.2008.06616.x
27. P. Nick, Plant Cell Monogr. 143, 175 (2008). 10.1007/7089-2007-145
28. M. Suzuki, A. Hirao, and A. Mizuno, J. Biol. Chem. 278, 51448 (2003). 10.1074/jbc.M308212200
29. C. Conde and A. Caceres, Nat. Rev. Neurosci. 10, 319 (2009). 10.1038/nrn2631
30. S. R. Williams, Nat. Neurosci. 7, 961 (2004). 10.1038/nn1305
31. W. E. Crill, J. Physiology-Paris 93, 17 (1999). 10.1016/S0928-4257(99) 80132-6
32. M. H. Kole and G. J. Stuart, Nat. Neurosci. 11, 1253 (2008). 10.1038/nn.2203
33. S. Yamaguchi, I. Fujii-Taira, A. Murakami, N. Hirose, N. Aoki, E. Izawa, Y. Fujimoto, T. Takano, T. Matsushima, and K. J. Homma, Brain Res. Bull. 76, 282 (2008). 10.1016/j.brainresbull.2008.02.010
34. A. Shimada, M. Tsuzuki, H. Keino, M. Satoh, Y. Chiba, Y. Saitoh, and M. Hosokawa, Neuropathol. Appl. Neurobiol. 32, 1 (2006). 10.1111/j.1365-2990.2006. 00632.x
35. Z. Khuchua, D. F. Wozniak, M. E. Bardgett, Z. Yue, M. McDonald, J. Boero, R. E. Hartman, H. Sims, and A. W. Strauss, Neuroscience 119, 101 (2003). 10.1016/S0306-4522(03)00094-0
36. A. Mershin, E. Pavlopoulos, O. Fitch, B. C. Braden, D. V. Nanopoulos, and E. M. Skoulakis, Learn. Memory 11, 277 (2004). 10.1101/lm.70804
37. L. Pennanen, D. P. Wolfer, R. M. Nitsch, and J. Gotz, Genes Brain Behav. 5, 369 (2006). 10.1111/j.1601-183X.2005.00165.x
38. T. Nakayama and T. Sawada, Pharmacol., Biochem. Behav. 71, 119 (2002). 10.1016/S0091-3057(01)00634-7
39. G. Bensimon and R. Chermat, Pharmacol., Biochem. Behav. 38, 141 (1991). 10.1016/0091-3057(91)90602-X
40. P. L. Di Patre, J. D. Oh, J. M. Simmons, and L. L. Butcher, Brain Res. 523, 316 (1990). 10.1016/0006-8993(90)91506-C
41. T. J. Nelson, P. S. Backlund, Jr., and D. L. Alkon, Hippocampus 14, 46 (2004). 10.1002/hipo.10152
42. S. Cavallaro, V. D'Agata, P. Manickam, F. Dufour, and D. L. Alkon, Proc. Natl. Acad. Sci. U.S.A. 99, 16279 (2002). 10.1073/pnas.242597199
43. M. Bianchi, K. F. Fone, N. Azmi, C. A. Heidbreder, J. J. Hagan, and C. A. Marsden, Eur. J. Neurosci. 24, 2894 (2006). 10.1111/j.1460-9568.2006.05170.x
44. L. A. Roberts, C. H. Large, M. J. Higgins, T. W. Stone, C. T. O'Shaughnessy, and B. J. Morris, Brain Res. Mol. Brain Res. 56, 38 (1998). 10.1016/S0169-328X(98)00026-6
45. N. J. Woolf, M. D. Zinnerman, and G. V. W. Johnson, Brain Res. 821, 241 (1999). 10.1016/S0006-8993(99)01064-1
46. N. J. Woolf, Prog. Neurobiol. 55, 59 (1998). 10.1016/S0301-0082(97)00094- 4
47. M. Zervas, T. Opitz, W. Edelmann, B. Wainer, R. Kucherlapati, and P. K. Stanton, J. Neurosci. Res. 82, 83 (2005). 10.1002/jnr.20624
48. J. A. Tuszynski, S. Portet, J. M. Dixon, C. Luxford, and H. F. Cantiello, Biophys. J. 86, 1890 (2004). 10.1016/S0006-3495(04)74255-1
49. J. A. Tuszynski and J. M. Dixon, Biomedical Applications of Introductory Physics (John Wiley and Sons, New York, 2001).
50. B. Roux, T. Allen, S. Berneche, and W. Im, Q. Rev. Biophys. 37, 15 (2004). 10.1017/S0033583504003968
51. W. Im, S. Seefeld, and B. Roux, Biophys. J. 79, 788 (2000). 10.1016/S0006-3495(00)76336-3
52. W. Im and B. Roux, J. Chem. Phys. 115, 4850 (2001). 10.1063/1.1390507
53. W. Im and B. Roux, J. Mol. Biol. 322, 851 (2002). 10.1016/S0022-2836(02) 00778-7
54. S. Y. Noskov, W. Im, and B. Roux, Biophys. J. 87, 2299 (2004). 10.1529/biophysj.104.044008
55. D. Ermak and J. A. McCammon, J. Chem. Phys. 69, 1352 (1978). 10.1063/1.436761
56. B. Roux, Biophys. J. 95, 4205 (2008). 10.1529/biophysj.108.136499
57. B. Roux, Biophys. J. 73, 2980 (1997). 10.1016/S0006-3495(97)78327-9
58. A. Priel, J. A. Tuszynski, and N. J. Woolf, Eur. Biophys. J. 35, 40 (2005). 10.1007/s00249-005-0003-0
59. I. MathWorks, SimPowerSystems, Natick, MA, R2009a.
60. R. F. Luduena, Int. Rev. Cytol. 178, 207 (1998). 10.1016/S0074-7696(08) 62138-5