Evolutionary history of African mongoose rabies

Virus Research

Volumn 150, Issue 1-2, 2010, Pages 93-102

  Van Zyl, N ^a   Markotter, W ^a   Nel, L H ^a  

^a UNIVERSITY OF PRETORIA   (South Africa)

Author keywords

Molecular clock; Mongoose; Phylogeny; Rabies

Indexed keywords

VIRUS GLYCOPROTEIN; VIRUS NUCLEOPROTEIN; VIRUS RNA;

AFRICA; AMINO ACID SEQUENCE; ARTICLE; BAYES THEOREM; CARNIVORA; CONTROLLED STUDY; EVOLUTIONARY ADAPTATION; GENETIC VARIABILITY; MOLECULAR CLOCK; MOLECULAR EVOLUTION; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; POPULATION DYNAMICS; PRIORITY JOURNAL; RABIES VIRUS; SEQUENCE ALIGNMENT; STRAIN DIFFERENCE; VIRUS GENOME; VIRUS STRAIN;

AFRICA; ANIMALS; CLUSTER ANALYSIS; EVOLUTION, MOLECULAR; HERPESTIDAE; MOLECULAR SEQUENCE DATA; PHYLOGENY; RABIES; RABIES VIRUS; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY; VIRAL PROTEINS;

CANIDAE; HERPESTIDAE; RABIES VIRUS;

EID: 77952242526     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virusres.2010.02.018     Document Type: Article

References (46)

1. Badrane H., Tordo N. Host switching in the Lyssavirus history from the Chiroptera to Carnivora orders. J. Virol. 2001, 17:8096-8114.
2. Badrane H., Bahloul C., Perrin P., Tordo N. Evidence of two lyssavirus phylogroups with distinct pathogenicity and immunogenicity. J. Virol. 2001, 75:3268-3276.
3. Bingham J., Javangwe S., Sabeta C.T., Wandeler A.I., Nel L.H. Report of isolations of unusual lyssaviruses (rabies and Mokola virus) identified retrospectively from Zimbabwe. Tyskr. S. Afr. Vet. Ver. 2001, 72(2):92-94.
4. Biek R., Drummond A.J., Poss M. A virus reveals population structure and recent demographic history of its carnivore host. Science 2006, 311:538-541.
5. Bourhy H., Kissi B., Audry L., Smreczak M., Madkowska-Todys M., Kulonen K., Tordo N., Zmudzinski J.F., Holmes E.C. Ecology and evolution of rabies virus in Europe. J. Gen. Virol. 1999, 80:2545-2557.
6. Bourhy H., Reynes J., Dunham E.J., Dacheux L., Larrous F., Huong V.T.Q., Xu G., Yan J., Mirandas M.E.G., Holmes E.C. The origin and phylogeography of dog rabies virus. J. Gen. Virol. 2008, 89:2673-2681.
7. Chaparro F., Esterhuysen J.J. The role of the yellow mongoose (Cynictis penicillata) in the epidemiology of rabies in South Africa - preliminary results. Onderstepoort J. Vet. Res. 1993, 60(4):373-377.
8. Cluver E. Rabies in South Africa. J. Med. Assoc. S. Afr. 1927, 1:247-253.
9. Davis P.L., Holmes E.C., Larrous F., Van der Poel W.H., Tjornehoj K., Alonso W.J., Bourhy H. Phylogeography, population dynamics, and molecular evolution of European bat lyssaviruses. J. Virol. 2005, 79:10487-10497.
10. Davis P.L., Rambaut A., Bourhy H., Holmes E.C. The evolutionary dynamics of canid and mongoose rabies virus in southern Africa. Arch. Virol. 2007, 152(7):1251-1258.
11. Dean D.J., Abelseth M.K., Atanasiu P. The fluorescent antibody test. Laboratory Techniques in Rabies 1996, 88-95. World Health Organization, Geneva. F.X. Meslin, M.M. Kaplan, H. Koprowski (Eds.).
12. Drummond A.J., Nicholis G.K., Rodrigo A.G., Solomon W. Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data. Genetics 2002, 161:1307-1320.
13. Drummond A.J., Ho S.Y.W., Phillips M.J., Rambaut A. Relaxed phyloegenetics and dating with confidence. PLoS Biol. 2006, 4:e88.
14. Drummond A.J., Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 2007, 7:214.
15. Edington, A., 1895. Report of the Director of the Colonial Bacteriological Institute for the year 1894. Department of Agriculture, Cape of Good Hope, pp. 5-6.
16. Foggin, C.M., 1988. Rabies and Rabies-related Viruses in Zimbabwe: Historical, Virological and Ecological Aspects. Ph.D. thesis. University of Zimbabwe.
17. Grenfell B.T., Pybus O.G., Gog J.R., Wood J.L., Daly J.M., Mumford J.A., Holmes E.C. Unifying the epidemiological and evolutionary dynamics of pathogens. Science 2004, 303:327-332.
18. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. Ser. 1999, 41:95-98.
19. Henning M.W. Rabies, hydrophobia-hondsdolheid. Animal Diseases in South Africa 1949, Central News Agency Ltd., South Africa, pp. 733-736. second ed.
20. Hertzenberg L. Two cases of hydrophobia. J. Med. Assoc. S. Afr. 1928, 2:659-661.
21. Holmes E.C., Woelk C.H., Kassis R., Bourhy H. Genetic constraints and the adaptive evolution of rabies virus in nature. Virology 2002, 292:247-257.
22. Hughes G.J. A reassessment of the emergence time of European bat lyssavirus type1. Infect. Genet. Evol. 2008, 8(6):820-824.
23. Hutcheon, D., 1894. Reports of the colonial veterinary surgeon for the year 1893. Cape of Good Hope, Dept. of Agric., pp. 7-10.
24. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 1980, 15:111-120.
25. King A.A., Meredith C.D., Thomson G.R. Canid and viverrid viruses in South Africa. Onderstepoort J. Vet. Res. 1993, 60:295-299.
26. Kissi B., Tordo N., Bourhy H. Genetic polymorphism in the rabies virus nucleoprotein gene. Virology 1995, 209:526-537.
27. Kumar S., Tamura K., Nei M. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform. 2004, 5:50-163.
28. Leslie M.J., Messenger S., Rohde R.E., Smith J., Cheshier R., Hanlon C., Rupprecht C.E. Bat-associated rabies virus in Skunks. Emerg. Infect. Dis. 2006, 12:1274-1277.
29. Markotter W., Randles J., Rupprecht C.E., Sabeta C.T., Wandeler A.I., Taylor P.J., Nel L.H. Recent Lagos bat virus isolations from bats (suborder Megachiroptera) in South Africa. Emerg. Infect Dis. 2006, 12:504-506.
30. Moya A., Holmes E.C., Gonzales-Candelas F. The population genetics and evolutionary epidemiology of RNA viruses. Nat. Rev. Microbiol. 2004, 2:279-288.
31. Nel L.H., Thomson G.R., Von Teichman B.F. Molecular epidemiology of rabies virus in South Africa. Onderstepoort J. Vet. Res. 1993, 60:301-306.
32. Nel L.H., Bingham J., Jacobs J.A., Jaftha A nucleotide specific polymerase chain reaction assay to differentiate rabies virus biotypes in South Africa. Onderstepoort J. Vet. Res. 1998, 65:297-303.
33. Nel L.H., Sabeta C.T., Von Teichman B., Jaftha J.B., Rupprecht C.E., Bingham J. Mongoose rabies in southern Africa: a re-evaluation based on molecular epidemiology. Virus Res. 2005, 109:165-173.
34. Nel L.H., Rupprecht C.E. The emergence of lyssaviruses in the old world. Wildlife and Emerging Zoonotic Disease: The Biology, Circumstances and Consequences of Cross-species Transmission 2007, 161-193. Springer. J.E. Childs, J.S. Mackenzie, J.A. Richt (Eds.).
35. Posada D., Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 1998, 14(9):817-818.
36. Sacramento D., Bourhy H., Tordo N. PCR technique as an alternative method for diagnosis and molecular epidemiology of rabies virus. Mol. Cell. Probes 1991, 5:229-240.
37. Sagay J.O., Wilson D.A. Africa - A Modern History (1800-1975) 1978, Africana Publishing Company, New York, pp. 150-151, 271-278.
38. Snyman P.S. The study and control of vectors of rabies in South Africa. Onderstepoort J. Vet. Sci. Anim. Ind. 1940, 15(12):9-140.
39. Swanepoel R., Barnard B.J.H., Meredith C.D., Bishop G.C., Bruckner G.K., Foggin C.M., Hubschle O.J.B. Rabies in southern Africa. Onderstepoort J. Vet. Res. 1993, 60:325-346.
40. Swofford D.L. PAUP: Phylogenetic Analysis Using Parsimony (and other methods). Version 4 2003, Sinauer Associates, Sunderland, MA.
41. Tajima F., Nei M. Estimation of evolutionary distance between nucleotide sequences. Mol. Biol. Evol. 1984, 1:269-285.
42. Talbi C., Holmes E.C., de Benedictis P., Faye O., Nakoune E., Gamatie D., Diarra A., Elmamy B.O., Sow A., Adjogoua E.V., Sangare O., Dundon W.G., Capua I., Sall A.A., Bourhy H. Evolutionary history and dynamics of dog rabies virus in western and central Africa. J. Gen. Virol. 2009, 90:783-791.
43. Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22(22):4673-4680.
44. Tordo N., Poch O., Ermine A., Keith G., Rougeon F. Walking along the rabies genome: is the large G-L intergenic region a remnant gene?. Proc. Natl. Acad. Sci. U.S.A. 1986, 83:3914-3918.
45. Von Teichman B.F., Thomson G.R., Meredith C.D., Nel L.H. Molecular epidemiology of rabies virus in South Africa: Evidence for two distinct virus groups. J. Gen. Virol. 1995, 76:73-82.
46. Zhang Y.Z., Xiang C., Ziao Y., Wang D., Jiang R., Xiao Q., Hao Z.H., Zhang L., Yu Y., Fu Z.F. Molecular characterization of rabies virus isolates in China during 2004. Virus Res. 2006, 121:179-188.