메뉴 건너뛰기




Volumn 27, Issue 5, 2010, Pages 375-385

Population genetic structure and phylogeography of masu salmon (Oncorhynchus masou masou) inferred from mitochondrial and microsatellite DNA analyses

Author keywords

Genetic variation; Masu salmon; Microsatellite; Mitochondrial ND5; Phylogeography; Population structure

Indexed keywords

DNA; MICROSATELLITE DNA; MITOCHONDRIAL DNA;

EID: 77952072925     PISSN: 02890003     EISSN: 02890003     Source Type: Journal    
DOI: 10.2108/zsj.27.375     Document Type: Article
Times cited : (19)

References (53)
  • 1
    • 0028937321 scopus 로고
    • Evolution of the immunoglobulin M constant region genes of salmonid fish, rainbow trout (Oncorhynchus mykiss) and Arctic charr (Salvelinus alpinus): Implications concerning divergence time of species
    • Andersson E, Peixoto B, Tormanen V, Matsunaga T (1995) Evolution of the immunoglobulin M constant region genes of salmonid fish, rainbow trout (Oncorhynchus mykiss) and Arctic charr (Salvelinus alpinus): implications concerning divergence time of species. Immunogenetics 41: 312-315
    • (1995) Immunogenetics , vol.41 , pp. 312-315
    • Andersson, E.1    Peixoto, B.2    Tormanen, V.3    Matsunaga, T.4
  • 3
    • 0029310543 scopus 로고
    • Genetic diversity of trout (genus Salmo) from its most eastern native range based on mitochondrial DNA and nuclear gene variation
    • Bernatchez L, Osinov A (1995) Genetic diversity of trout (genus Salmo) from its most eastern native range based on mitochondrial DNA and nuclear gene variation. Mol Ecol 4: 285-297
    • (1995) Mol Ecol , vol.4 , pp. 285-297
    • Bernatchez, L.1    Osinov, A.2
  • 4
    • 9444243285 scopus 로고    scopus 로고
    • Phylogeographic analysis of chum salmon Oncorhynchus keta Walmaum in Asian populations based on mtDNA variation
    • Brykov VIA, Polyakova NE, Prokhorova AV (2003) Phylogeographic analysis of chum salmon Oncorhynchus keta Walmaum in Asian populations based on mtDNA variation. Russ J Genet 39: 61-67
    • (2003) Russ J Genet , vol.39 , pp. 61-67
    • Brykov, V.I.A.1    Polyakova, N.E.2    Prokhorova, A.V.3
  • 5
    • 0014082615 scopus 로고
    • Phylogenetic analysis: Models and estimation procedures
    • Cavalli-Sforza LL, Edwards AWF (1967) Phylogenetic analysis: models and estimation procedures. Am J Human Genet 19: 233-257
    • (1967) Am J Human Genet , vol.19 , pp. 233-257
    • Cavalli-Sforza, L.L.1    Edwards, A.W.F.2
  • 6
    • 0036017139 scopus 로고    scopus 로고
    • Comparative phylogeography of the two pink salmon broodlines: An analysis based on mitochondrial DNA
    • Churikov D, Gharrett AJ (2002) Comparative phylogeography of the two pink salmon broodlines: an analysis based on mitochondrial DNA. Mol Ecol 11: 1077-1101
    • (2002) Mol Ecol , vol.11 , pp. 1077-1101
    • Churikov, D.1    Gharrett, A.J.2
  • 7
    • 0033771358 scopus 로고    scopus 로고
    • TCS: A computer program to estimate gene genealogies
    • Clement M, Posaka D, Crandall KA (2000) TCS: a computer program to estimate gene genealogies. Mol Ecol 9: 1657-1659
    • (2000) Mol Ecol , vol.9 , pp. 1657-1659
    • Clement, M.1    Posaka, D.2    Crandall, K.A.3
  • 8
    • 0033964832 scopus 로고    scopus 로고
    • Integrating molecular genetic technology with traditional approaches for genetic improvement in aquaculture species
    • Davis GP, Hetzel DJS (2000) Integrating molecular genetic technology with traditional approaches for genetic improvement in aquaculture species. Aquaculture Res 31: 3-10
    • (2000) Aquaculture Res , vol.31 , pp. 3-10
    • Davis, G.P.1    Hetzel, D.J.S.2
  • 9
    • 0036846047 scopus 로고    scopus 로고
    • Population genetic structure and male-biased dispersal in the queenless ant, Diacamma cyaneiventre
    • Doums C, Cabrera H, Peeters C (2002) Population genetic structure and male-biased dispersal in the queenless ant, Diacamma cyaneiventre. Mol Ecol 11: 2251-2264
    • (2002) Mol Ecol , vol.11 , pp. 2251-2264
    • Doums, C.1    Cabrera, H.2    Peeters, C.3
  • 10
    • 33746307885 scopus 로고    scopus 로고
    • Genetic variation in wild and hatchery populations of Masu salmon (Oncorhynchus masou) inferred from mitochondrial DNA sequence analysis
    • Edpalina RR, Yoon M, Urawa S, Kusuda S, Urano A, Abe S (2004) Genetic variation in wild and hatchery populations of Masu salmon (Oncorhynchus masou) inferred from mitochondrial DNA sequence analysis. Fish Genet Breed Sci 34: 37-44
    • (2004) Fish Genet Breed Sci , vol.34 , pp. 37-44
    • Edpalina, R.R.1    Yoon, M.2    Urawa, S.3    Kusuda, S.4    Urano, A.5    Abe, S.6
  • 11
    • 85007110786 scopus 로고    scopus 로고
    • Arlequin ver 3.0: An integrated software package for population genetics data analysis
    • Excoffier L, Laval G, Schneider S (2005) Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evol Bioinform Online 1: 47-50
    • (2005) Evol Bioinform Online , vol.1 , pp. 47-50
    • Excoffier, L.1    Laval, G.2    Schneider, S.3
  • 13
    • 0001967627 scopus 로고
    • The utility of mitochondrial DNA in fish genetics and fishery management
    • Ed by N Ryma, F Utter, University of Washington Press, Seattle
    • Ferris SD, Berg WJ (1987) The utility of mitochondrial DNA in fish genetics and fishery management. In "Population Genetics and Fishery Management" Ed by N Ryma, F Utter, University of Washington Press, Seattle, pp 277-300
    • (1987) Population Genetics and Fishery Management , pp. 277-300
    • Ferris, S.D.1    Berg, W.J.2
  • 15
    • 0030821992 scopus 로고    scopus 로고
    • Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection
    • Fu Y-X (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147: 915-925
    • (1997) Genetics , vol.147 , pp. 915-925
    • Fu, Y.-X.1
  • 17
    • 0029560751 scopus 로고
    • Ecological population genetics: The interface between genes and the environment
    • Hoffmann AA, Sgrh CM, Lawler SH (1995) Ecological population genetics: the interface between genes and the environment. Genetics 29: 349-370
    • (1995) Genetics , vol.29 , pp. 349-370
    • Hoffmann, A.A.1    Sgrh, C.M.2    Lawler, S.H.3
  • 18
    • 0003045959 scopus 로고
    • Life histories of masu and amago salmon (Oncorhynchus masou and Oncorhynchus rhodurus)
    • Ed by C Groot, L Margolis, UBC Press, Vancouver
    • Kato F (1991) Life histories of masu and amago salmon (Oncorhynchus masou and Oncorhynchus rhodurus). In "Pacific Salmon Life Histories" Ed by C Groot, L Margolis, UBC Press, Vancouver, pp 396-414
    • (1991) Pacific Salmon Life Histories , pp. 396-414
    • Kato, F.1
  • 19
    • 21144475216 scopus 로고
    • Haplotypic differences and variability of mitochondrial DNA among cultured stocks of the masu salmon complex
    • Kijima A, Matsunami D (1992) Haplotypic differences and variability of mitochondrial DNA among cultured stocks of the masu salmon complex. Nippon Suisan Gakkaishi 58: 1431-1436
    • (1992) Nippon Suisan Gakkaishi , vol.58 , pp. 1431-1436
    • Kijima, A.1    Matsunami, D.2
  • 20
    • 36549003188 scopus 로고    scopus 로고
    • Genetic structure of masu salmon (Oncorhynchus masou) populations in Hokkaido, northernmost Japan, inferred from mitochondrial DNA variation
    • Kitanish S, Edo K, Yamamoto T, Azuma N, Hasegawa O, Higashi S (2007) Genetic structure of masu salmon (Oncorhynchus masou) populations in Hokkaido, northernmost Japan, inferred from mitochondrial DNA variation. J Fish Biol 71: 437-452
    • (2007) J Fish Biol , vol.71 , pp. 437-452
    • Kitanish, S.1    Edo, K.2    Yamamoto, T.3    Azuma, N.4    Hasegawa, O.5    Higashi, S.6
  • 21
    • 0035047636 scopus 로고    scopus 로고
    • Contrasting patterns of mitochondrial DNA and microsatellite introgressive hybridization between lineages of lake whitefish (Coregonus clupeaformis); Relevance for speciation
    • Lu G, Basley DJ, Bernatchez L (2001) Contrasting patterns of mitochondrial DNA and microsatellite introgressive hybridization between lineages of lake whitefish (Coregonus clupeaformis); relevance for speciation. Mol Ecol 10: 965-985
    • (2001) Mol Ecol , vol.10 , pp. 965-985
    • Lu, G.1    Basley, D.J.2    Bernatchez, L.3
  • 22
    • 0001916191 scopus 로고
    • Studies on the freshwater life and propagation technology of masu salmon, Oncorhynchus masou (Brevoort)
    • Mayama H (1992) Studies on the freshwater life and propagation technology of masu salmon, Oncorhynchus masou (Brevoort). Sci Rep Hokkaido Salmon Hatchery 46: 1-156
    • (1992) Sci Rep Hokkaido Salmon Hatchery , vol.46 , pp. 1-156
    • Mayama, H.1
  • 23
    • 0034522690 scopus 로고    scopus 로고
    • Mitochondrial DNA variation in rainbow trout (Oncorhynchus mykiss) across its native range: Testing biogeographical hypotheses and their relevance to conservation
    • McCusker MR, Parkinson E, Taylor EB (2000) Mitochondrial DNA variation in rainbow trout (Oncorhynchus mykiss) across its native range: testing biogeographical hypotheses and their relevance to conservation. Mol Ecol 9: 2089-2108
    • (2000) Mol Ecol , vol.9 , pp. 2089-2108
    • McCusker, M.R.1    Parkinson, E.2    Taylor, E.B.3
  • 24
    • 0035009122 scopus 로고    scopus 로고
    • Commercial harvest of hatchery-reared masu salmon Oncorhynchus masou estimated by a coast-wide sampling program in Hokkaido, northern Japan, and the two-stage sampling schemes of landings
    • Miyakoshi Y, Nagata M, Sugiwaka K, Kitada S (2001) Commercial harvest of hatchery-reared masu salmon Oncorhynchus masou estimated by a coast-wide sampling program in Hokkaido, northern Japan, and the two-stage sampling schemes of landings. Fish Sci 67: 126-133
    • (2001) Fish Sci , vol.67 , pp. 126-133
    • Miyakoshi, Y.1    Nagata, M.2    Sugiwaka, K.3    Kitada, S.4
  • 25
    • 1542291182 scopus 로고    scopus 로고
    • Estimates of numbers of masu salmon caught by recreational fishermen in the coastal area off Iburi, Hokkaido, Japan
    • Miyakoshi Y, Koyama T, Aoyama T, Sakakibara S, Kitada S (2004) Estimates of numbers of masu salmon caught by recreational fishermen in the coastal area off Iburi, Hokkaido, Japan. Fish Sci 70: 87-93
    • (2004) Fish Sci , vol.70 , pp. 87-93
    • Miyakoshi, Y.1    Koyama, T.2    Aoyama, T.3    Sakakibara, S.4    Kitada, S.5
  • 26
    • 0035988994 scopus 로고    scopus 로고
    • Linkage relationships for 35 new microsatellite loci in chinook salmon Oncorhynchus tshawytscha
    • Naish KA, Park LK (2002) Linkage relationships for 35 new microsatellite loci in chinook salmon Oncorhynchus tshawytscha. Anim Genet 33: 316-318
    • (2002) Anim Genet , vol.33 , pp. 316-318
    • Naish, K.A.1    Park, L.K.2
  • 28
    • 77952035737 scopus 로고    scopus 로고
    • Studies on the genetic diversity of wild populations of masu salmon, Oncorhynchus masou masou, by microsatellite DNA markers
    • (in Japanese with English abstract)
    • Noguchi D, Taniguchi N (2007) Studies on the genetic diversity of wild populations of masu salmon, Oncorhynchus masou masou, by microsatellite DNA markers. Aquaculture Sci 55: 521-527 (in Japanese with English abstract)
    • (2007) Aquaculture Sci , vol.55 , pp. 521-527
    • Noguchi, D.1    Taniguchi, N.2
  • 29
    • 54349104529 scopus 로고    scopus 로고
    • Isolation and characterization of microsatellite DNA markers for population genetics study of masu salmon, Oncorhynchus masou masou
    • (in Japanese with English abstract)
    • Noguchi D, Ikeda M, Nakajima M, Taniguchi N (2003) Isolation and characterization of microsatellite DNA markers for population genetics study of masu salmon, Oncorhynchus masou masou. Fish Genet Breed Sci 33: 61-66 (in Japanese with English abstract)
    • (2003) Fish Genet Breed Sci , vol.33 , pp. 61-66
    • Noguchi, D.1    Ikeda, M.2    Nakajima, M.3    Taniguchi, N.4
  • 30
    • 15944384316 scopus 로고    scopus 로고
    • Environmental change in the Sea of Okhotsk during the last 1.1 million years
    • Nürnberg D, Tiedemann R (2004) Environmental change in the Sea of Okhotsk during the last 1.1 million years. Paleoceanography 19: PA4011
    • (2004) Paleoceanography , vol.19
    • Nürnberg, D.1    Tiedemann, R.2
  • 31
    • 0033166076 scopus 로고    scopus 로고
    • Population genetic structure of the African elephant in Uganda based on variation at mitochondrial and nuclear loci: Evidence for male-biased gene flow
    • Nyakaana S, Arctander P (1999) Population genetic structure of the African elephant in Uganda based on variation at mitochondrial and nuclear loci: evidence for male-biased gene flow. Mol Ecol 8: 1105-1115
    • (1999) Mol Ecol , vol.8 , pp. 1105-1115
    • Nyakaana, S.1    Arctander, P.2
  • 33
    • 85008131991 scopus 로고
    • Genetic variation and population structure in masu salmon Oncorhynchus masou of Japan
    • Okazaki T (1986) Genetic variation and population structure in masu salmon Oncorhynchus masou of Japan. Bul Japan Soc Sci Fish 52: 1365-1376
    • (1986) Bul Japan Soc Sci Fish , vol.52 , pp. 1365-1376
    • Okazaki, T.1
  • 34
    • 0034520080 scopus 로고    scopus 로고
    • Characterization of 14 tetranucleotide microsatellite loci derived from sockeye salmon
    • Olsen JB, Wilson SL, Kretschmer EJ, Jones KC, Seeb JE (2000) Characterization of 14 tetranucleotide microsatellite loci derived from sockeye salmon. Mol Ecol 9: 2185-2187
    • (2000) Mol Ecol , vol.9 , pp. 2185-2187
    • Olsen, J.B.1    Wilson, S.L.2    Kretschmer, E.J.3    Jones, K.C.4    Seeb, J.E.5
  • 35
    • 4344606590 scopus 로고    scopus 로고
    • MICRO-CHECKER: Software for identifying and correcting genotyping errors in microsatellite data
    • Oosterhout CV, Hutchinson WF, Derek P, Wills M, Shipley P (2004) MICRO-CHECKER: Software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4: 535-538
    • (2004) Mol Ecol Notes , vol.4 , pp. 535-538
    • Oosterhout, C.V.1    Hutchinson, W.F.2    Derek, P.3    Wills, M.4    Shipley, P.5
  • 36
    • 34249797574 scopus 로고    scopus 로고
    • The automation and evaluation of nested clade phylogeographic analysis
    • DOI 10.1111/j.1558-5646.2007.00124.x
    • Panchal M, Beaumont MA (2007) The automation and evaluation of nested clade phylogeographic analysis. Evolution 61: 1466-1480 (Pubitemid 46848836)
    • (2007) Evolution , vol.61 , Issue.6 , pp. 1466-1480
    • Panchal, M.1    Beaumont, M.A.2
  • 37
    • 0034919015 scopus 로고    scopus 로고
    • Microsatellite and mitochondrial DNA homogeneity among phenotypically diverse crossbill taxa in the UK
    • Piertney SB, Summers R, Marquiss M (2000) Microsatellite and mitochondrial DNA homogeneity among phenotypically diverse crossbill taxa in the UK. Proc R Soc Lond B 268: 1511-1517
    • (2000) Proc R Soc Lond B , vol.268 , pp. 1511-1517
    • Piertney, S.B.1    Summers, R.2    Marquiss, M.3
  • 38
    • 0034100234 scopus 로고    scopus 로고
    • GeoDis: A program for the cladistic analysis of the geographical distribution of genetic haplotypes
    • Posada D, Crandall KA, Templeton AR (2000) GeoDis: a program for the cladistic analysis of the geographical distribution of genetic haplotypes. Mol Ecol Notes 9: 487-488
    • (2000) Mol Ecol Notes , vol.9 , pp. 487-488
    • Posada, D.1    Crandall, K.A.2    Templeton, A.R.3
  • 40
    • 0026548159 scopus 로고
    • Population growth makes waves in the distribution of pairwise genetic differences
    • Rogers AR, Harpending H (1992) Population growth makes waves in the distribution of pairwise genetic differences. Mol Biol Evol 9: 552-569
    • (1992) Mol Biol Evol , vol.9 , pp. 552-569
    • Rogers, A.R.1    Harpending, H.2
  • 41
    • 0002827286 scopus 로고
    • Life history of chum salmon (Oncorhynchus keta)
    • Ed by C Groot, L Margolis, UBC Press, Vancouver
    • Salo EO (1991) Life history of chum salmon (Oncorhynchus keta). In "Pacific Salmon Life Histories" Ed by C Groot, L Margolis, UBC Press, Vancouver, pp 231-309
    • (1991) Pacific Salmon Life Histories , pp. 231-309
    • Salo, E.O.1
  • 42
    • 3543023392 scopus 로고    scopus 로고
    • Genetic population structure of chum salmon in the Pacific Rim inferred from mitochondrial DNA sequence variation
    • Sato S, Kojima H, Ando J, Wilmot RL, Seeb LW, et al. (2004) Genetic population structure of chum salmon in the Pacific Rim inferred from mitochondrial DNA sequence variation. Environ Biol Fish 69: 38-50
    • (2004) Environ Biol Fish , vol.69 , pp. 38-50
    • Sato, S.1    Kojima, H.2    Ando, J.3    Wilmot, R.L.4    Seeb, L.W.5
  • 44
    • 0035543315 scopus 로고    scopus 로고
    • Sex-biased gene flow in spectacled eiders (Anatidae): Inferences from molecular markers with contrasting modes of inheritance
    • Scribner KT, Petersen MR, Fields RL, Talbot SL, Pearce JM, Chesser RK (2001) Sex-biased gene flow in spectacled eiders (Anatidae): inferences from molecular markers with contrasting modes of inheritance. Evolution 55: 2105-2115
    • (2001) Evolution , vol.55 , pp. 2105-2115
    • Scribner, K.T.1    Petersen, M.R.2    Fields, R.L.3    Talbot, S.L.4    Pearce, J.M.5    Chesser, R.K.6
  • 45
    • 0025951996 scopus 로고
    • Pairwise comparisons of mitochondrial dna sequences in stable and exponentially growing populations
    • Slatkin M, Hudson RR (1991) Pairwise Comparisons of Mitochondrial DNA Sequences in Stable and Exponentially Growing Populations. Genetics 129: 555-562
    • (1991) Genetics , vol.129 , pp. 555-562
    • Slatkin, M.1    Hudson, R.R.2
  • 46
    • 0034374526 scopus 로고    scopus 로고
    • Genetic variability of masu salmon in Hokkaido, by restriction fragment length polymorphism analysis of mitochondrial DNA
    • (in Japanese with English abstract)
    • Suzuki K, Kobayashi T, Matsuishi T, Numachi K (2000) Genetic variability of masu salmon in Hokkaido, by restriction fragment length polymorphism analysis of mitochondrial DNA. Nippon Suisan Gakkaishi 66: 639-646 (in Japanese with English abstract)
    • (2000) Nippon Suisan Gakkaishi , vol.66 , pp. 639-646
    • Suzuki, K.1    Kobayashi, T.2    Matsuishi, T.3    Numachi, K.4
  • 48
    • 0026076552 scopus 로고
    • Gene structure of chum salmon somatolactin, a presumed pituitary hormone of the growth hormone/prolactin family
    • Takayama Y, Rand-Weaver M, Kawauchi H, Ono M (1991) Gene structure of chum salmon somatolactin, a presumed pituitary hormone of the growth hormone/prolactin family. Mol Endocrinol 5: 778-786
    • (1991) Mol Endocrinol , vol.5 , pp. 778-786
    • Takayama, Y.1    Rand-Weaver, M.2    Kawauchi, H.3    Ono, M.4
  • 49
    • 0007793770 scopus 로고    scopus 로고
    • Genetic and environmental variances of body size and morphological traits in communally reared clonal lines from gynogenetic diploid ayu, Plecoglossus altivelis
    • Taniguchi N, Yamazaki M, Takagi M, Tsujimura A (1996) Genetic and environmental variances of body size and morphological traits in communally reared clonal lines from gynogenetic diploid ayu, Plecoglossus altivelis. Aquaculture 140: 333-341
    • (1996) Aquaculture , vol.140 , pp. 333-341
    • Taniguchi, N.1    Yamazaki, M.2    Takagi, M.3    Tsujimura, A.4
  • 50
    • 0029058158 scopus 로고
    • Separating population structure from population history: A cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum
    • Templeton AR, Routman E, Phillipa CA (1995) Separating population structure from population history: a cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum. Genetics 140: 767-782
    • (1995) Genetics , vol.140 , pp. 767-782
    • Templeton, A.R.1    Routman, E.2    Phillipa, C.A.3
  • 51
    • 0031799547 scopus 로고    scopus 로고
    • Variation of microsatellite size homoplasy across electromorphs, loci, and populations in three invertebrate species
    • Viard F, Franck P, Dubois M-P, Estoup A, Jarne P (1998) Variation of microsatellite size homoplasy across electromorphs, loci, and populations in three invertebrate species. J Mol Evol 47: 42-51
    • (1998) J Mol Evol , vol.47 , pp. 42-51
    • Viard, F.1    Franck, P.2    Dubois, M.-P.3    Estoup, A.4    Jarne, P.5
  • 52
    • 53549111343 scopus 로고    scopus 로고
    • Mitochondrial DNA variation and genetic population structure of chum salmon Oncorhynchus keta around the Pacific Rim
    • Yoon M, Sato S, Seeb JE, Brykov V, Seeb LW, et al. (2008) Mitochondrial DNA variation and genetic population structure of chum salmon Oncorhynchus keta around the Pacific Rim. J Fish Bio 73: 1256-1266
    • (2008) J Fish Bio , vol.73 , pp. 1256-1266
    • Yoon, M.1    Sato, S.2    Seeb, J.E.3    Brykov, V.4    Seeb, L.W.5
  • 53
    • 21244474756 scopus 로고    scopus 로고
    • Interaction between hatchery and wild Pacific salmon in the Far East of Russia: A review
    • Zaporozhets OM, Zaporozhets GV (2004) Interaction between hatchery and wild Pacific salmon in the Far East of Russia: a review. Rev Fish Biol Fish 14: 305-319
    • (2004) Rev Fish Biol Fish , vol.14 , pp. 305-319
    • Zaporozhets, O.M.1    Zaporozhets, G.V.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.