메뉴 건너뛰기




Volumn 81, Issue 5, 2010, Pages

Role of the particle's stepping cycle in an asymmetric exclusion process: A model of mRNA translation

Author keywords

[No Author keywords available]

Indexed keywords

ASYMMETRIC EXCLUSION PROCESS; ASYMMETRIC SIMPLE EXCLUSION PROCESS; BIOLOGICAL PROCESS; COARSE-GRAINED; DETAILED MODELS; HIGH DENSITY; LOW DENSITY; MAXIMAL CURRENT; MEAN FIELD APPROACH; MECHANICAL MODEL; MESSENGER RNA; PARAMETER VALUES; POLYNUCLEOTIDES; THEORETICAL PREDICTION;

EID: 77952020413     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.81.051904     Document Type: Article
Times cited : (83)

References (43)
  • 3
    • 3943080710 scopus 로고    scopus 로고
    • The molecular mechanics of eukaryotic translation
    • DOI 10.1146/annurev.biochem.73.030403.080419
    • L. D. Kapp and J. R. Lorsch, Annu. Rev. Biochem. 73, 657 (2004). 10.1146/annurev.biochem.73.030403.080419 (Pubitemid 39050383)
    • (2004) Annual Review of Biochemistry , vol.73 , pp. 657-704
    • Kapp, L.D.1    Lorsch, J.R.2
  • 5
  • 8
    • 0002214237 scopus 로고    scopus 로고
    • 10.1016/S0370-1573(98)00006-4
    • B. Derrida, Phys. Rep. 301, 65 (1998). 10.1016/S0370-1573(98)00006-4
    • (1998) Phys. Rep. , vol.301 , pp. 65
    • Derrida, B.1
  • 9
    • 0003232510 scopus 로고
    • in edited by C. Domb and J. Lebowitz (Academic Press, New York
    • B. Schmittman and R. K. P. Zia, in Phase Transitions and Critical Phenomena, edited by, C. Domb, and, J. Lebowitz, (Academic Press, New York, 1995), Vol. 17, pp. 3-251.
    • (1995) Phase Transitions and Critical Phenomena , vol.17 , pp. 3-251
    • Schmittman, B.1    Zia, R.K.P.2
  • 10
    • 77249167474 scopus 로고    scopus 로고
    • in edited by C. Domb and J. Lebowitz (Academic Press, San Diego, 10.1016/S1062-7901(01)80015-X
    • G. Schutz, in Phase Transitions and Critical Phenomena, edited by, C. Domb, and, J. Lebowitz, (Academic Press, San Diego, 2001), Vol. 19, pp. 1-251. 10.1016/S1062-7901(01)80015-X
    • (2001) Phase Transitions and Critical Phenomena , vol.19 , pp. 1-251
    • Schutz, G.1
  • 12
    • 0037470280 scopus 로고    scopus 로고
    • 10.1088/0305-4470/36/8/302
    • G. Lakatos and T. Chou, J. Phys. A 36, 2027 (2003). 10.1088/0305-4470/36/ 8/302
    • (2003) J. Phys. A , vol.36 , pp. 2027
    • Lakatos, G.1    Chou, T.2
  • 16
    • 35648990568 scopus 로고    scopus 로고
    • 10.1088/1751-8113/40/46/R01
    • R. A. Blythe and M. R. Evans, J. Phys. A 40, R333 (2007). 10.1088/1751-8113/40/46/R01
    • (2007) J. Phys. A , vol.40 , pp. 333
    • Blythe, R.A.1    Evans, M.R.2
  • 17
  • 18
    • 18144385852 scopus 로고    scopus 로고
    • 10.1103/PhysRevLett.93.198101
    • T. Chou and G. Lakatos, Phys. Rev. Lett. 93, 198101 (2004). 10.1103/PhysRevLett.93.198101
    • (2004) Phys. Rev. Lett. , vol.93 , pp. 198101
    • Chou, T.1    Lakatos, G.2
  • 21
    • 28844464300 scopus 로고    scopus 로고
    • Physics of transport and traffic phenomena in biology: From molecular motors and cells to organisms
    • DOI 10.1016/j.plrev.2005.09.001, PII S1571064505000321
    • D. Chowdhury, A. Schadschneider, and K. Nishinari, Phys. Life. Rev. 2, 318 (2005). 10.1016/j.plrev.2005.09.001 (Pubitemid 41762628)
    • (2005) Physics of Life Reviews , vol.2 , Issue.4 , pp. 318-352
    • Chowdhury, D.1    Schadschneider, A.2    Nishinari, K.3
  • 23
    • 84890382494 scopus 로고    scopus 로고
    • in edited by C. Appert-Rolland, F. Chevoir, P. Gondret, S. Lassarre, J. P. Lebacque, and M. Schreckenberg (Springer, New York, 10.1007/978-3-540-77074- 9-76
    • P. Pierobon, in Traffic and Granular Flow ' 07, edited by, C. Appert-Rolland, F. Chevoir, P. Gondret, S. Lassarre, J. P. Lebacque, and, M. Schreckenberg, (Springer, New York, 2009), pp. 679-688. 10.1007/978-3-540-77074- 9-76
    • (2009) Traffic and Granular Flow ' 07 , pp. 679-688
    • Pierobon, P.1
  • 25
    • 33846820156 scopus 로고    scopus 로고
    • A model for protein translation: Polysome self-organization leads to maximum protein synthesis rates
    • DOI 10.1529/biophysj.106.087825
    • H. Zouridis and V. Hatzimanikatis, Biophys. J. 92, 717 (2007). 10.1529/biophysj.106.087825 (Pubitemid 46203205)
    • (2007) Biophysical Journal , vol.92 , Issue.3 , pp. 717-730
    • Zouridis, H.1    Hatzimanikatis, V.2
  • 28
    • 12044250009 scopus 로고
    • 10.1103/PhysRevLett.67.1882
    • J. Krug, Phys. Rev. Lett. 67, 1882 (1991). 10.1103/PhysRevLett.67.1882
    • (1991) Phys. Rev. Lett. , vol.67 , pp. 1882
    • Krug, J.1
  • 34
    • 84890420086 scopus 로고    scopus 로고
    • in edited by C. Appert-Rolland, F. Chevoir, P. Gondret, S. Lassarre, J. P. Lebacque, and M. Schreckenberg (Springer, New York, 10.1007/978-3-540-77074- 9-75
    • A. Parmeggiani, in Traffic and Granular Flow ' 07, edited by, C. Appert-Rolland, F. Chevoir, P. Gondret, S. Lassarre, J. P. Lebacque, and, M. Schreckenberg, (Springer, New York, 2009), pp. 667-677. 10.1007/978-3-540-77074- 9-75
    • (2009) Traffic and Granular Flow ' 07 , pp. 667-677
    • Parmeggiani, A.1
  • 37
    • 77952051422 scopus 로고    scopus 로고
    • It is possible to carry on the procedure with ρ0 and ρ□ instead of σ0 and σ□ but we find this way straightforward.
    • It is possible to carry on the procedure with ρ 0 and ρ □ instead of σ 0 and σ □ but we find this way straightforward.
  • 38
    • 77952088565 scopus 로고    scopus 로고
    • However, one might prefer to compare the model discussed here with a standard ASEP having an hopping rate p=γk/ (γ+k ), i.e., the inverse of the average waiting time on a site for the two-state model. In this case, by decreasing k one obtains a MC region that is bigger than the one obtained with the two-state model studied in this work. We thank Paul Higgs for this useful comment.
    • However, one might prefer to compare the model discussed here with a standard ASEP having an hopping rate p = γ k / (γ + k), i.e., the inverse of the average waiting time on a site for the two-state model. In this case, by decreasing k one obtains a MC region that is bigger than the one obtained with the two-state model studied in this work. We thank Paul Higgs for this useful comment.
  • 42
    • 77952083603 scopus 로고    scopus 로고
    • ′ cap increases proportionate to the current J.
    • ′ cap increases proportionate to the current J.
  • 43
    • 0042845842 scopus 로고    scopus 로고
    • 10.1016/S0006-3495(03)74518-4
    • T. Chou, Biophys. J. 85, 755 (2003). 10.1016/S0006-3495(03)74518-4
    • (2003) Biophys. J. , vol.85 , pp. 755
    • Chou, T.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.