메뉴 건너뛰기




Volumn 50, Issue 4, 2010, Pages 487-499

Design and evaluation of bonded atom pair descriptors

Author keywords

[No Author keywords available]

Indexed keywords

TOPOLOGY;

EID: 77952004389     PISSN: 15499596     EISSN: 1549960X     Source Type: Journal    
DOI: 10.1021/ci900512g     Document Type: Article
Times cited : (12)

References (25)
  • 2
    • 33847207834 scopus 로고    scopus 로고
    • Molecular similarity analysis in virtual screening: Foundations, limitations and novel approaches
    • Eckert, H; Bajorath, J. Molecular Similarity Analysis in Virtual Screening: Foundations, Limitations and Novel Approaches Drug Discovery Today 2007, 12, 225-233
    • (2007) Drug Discovery Today , vol.12 , pp. 225-233
    • Eckert, H.1    Bajorath, J.2
  • 3
    • 77952003316 scopus 로고    scopus 로고
    • Searching techniques for databases of two- and three-dimensional structures
    • Willet, P. Searching Techniques for Databases of Two- and Three-dimensional Structures J. Med. Chem. 2005, 48, 1-17
    • (2005) J. Med. Chem. , vol.48 , pp. 1-17
    • Willet, P.1
  • 4
    • 2042489375 scopus 로고    scopus 로고
    • Symyx Software: San Ramon, CA
    • MACCS Structural Keys; Symyx Software: San Ramon, CA, 2005.
    • (2005) MACCS Structural Keys
  • 5
    • 0023965741 scopus 로고
    • SMILES, a chemical language and information system. 1. Introduction to methodology and encoding rules
    • Weininger, D. SMILES, a Chemical Language and Information System. 1. Introduction to Methodology and Encoding Rules J. Chem. Inf. Comput. Sci. 1988, 28, 31-36
    • (1988) J. Chem. Inf. Comput. Sci. , vol.28 , pp. 31-36
    • Weininger, D.1
  • 6
    • 77951987496 scopus 로고    scopus 로고
    • Daylight Chemical Information Systems, Inc.: Aliso Viejo, CA
    • SMARTS; Daylight Chemical Information Systems, Inc.: Aliso Viejo, CA, 2008.
    • (2008) SMARTS
  • 7
    • 37049131942 scopus 로고
    • Analysis of structural characteristics of chemical compounds in a large computer-based file. Part II. Atom-centered fragments
    • Adamson, G. W.; Lynch, M. F.; Town, W. G. Analysis of Structural Characteristics of Chemical Compounds in a Large Computer-based File. Part II. Atom-Centered Fragments J. Chem. Soc. C 1971, 3702-3706
    • (1971) J. Chem. Soc. C , pp. 3702-3706
    • Adamson, G.W.1    Lynch, M.F.2    Town, W.G.3
  • 8
    • 33845379303 scopus 로고
    • Atom pairs as molecular features in structure-activity studies: Definition and applications
    • Carhart, R. E.; Smith, D. H.; Venkataraghavan, R. Atom Pairs as Molecular Features in Structure-Activity Studies: Definition and Applications J. Chem. Inf. Comput. Sci. 1985, 25, 64-73
    • (1985) J. Chem. Inf. Comput. Sci. , vol.25 , pp. 64-73
    • Carhart, R.E.1    Smith, D.H.2    Venkataraghavan, R.3
  • 10
    • 0003076470 scopus 로고
    • Topological torsion: A new molecular descriptor for sar applications. Comparison with other descriptors
    • Nilakantan, R.; Bauman, N.; Dixon, J. S.; Venkataraghavan, R. Topological Torsion: A New Molecular Descriptor for SAR Applications. Comparison with Other Descriptors J. Chem. Inf. Comput. Sci. 1987, 27, 82-85
    • (1987) J. Chem. Inf. Comput. Sci. , vol.27 , pp. 82-85
    • Nilakantan, R.1    Bauman, N.2    Dixon, J.S.3    Venkataraghavan, R.4
  • 11
    • 5544290537 scopus 로고    scopus 로고
    • Similarity searching of chemical databases using atom environment descriptors (MOLPRINT 2D): Evaluation of performance
    • Bender, A.; Mussa, H. Y.; Glen, R. C. Similarity Searching of Chemical Databases Using Atom Environment Descriptors (MOLPRINT 2D): Evaluation of Performance J. Chem. Inf. Comput. Sci. 2004, 44, 1708-1718
    • (2004) J. Chem. Inf. Comput. Sci. , vol.44 , pp. 1708-1718
    • Bender, A.1    Mussa, H.Y.2    Glen, R.C.3
  • 12
    • 0000043736 scopus 로고
    • Substructure searching methods: Old and new
    • Barnard, J. M. Substructure Searching Methods: Old and New J. Chem. Inf. Comput. Sci. 1993, 33, 532-538
    • (1993) J. Chem. Inf. Comput. Sci. , vol.33 , pp. 532-538
    • Barnard, J.M.1
  • 13
    • 0015655429 scopus 로고
    • Strategic considerations in the design of a screening system for substructure searches of chemical structure files
    • Adamson, G. W.; Cowell, J.; Lynch, M. F.; McLure, A. H. W.; Town, W. G.; Yapp, A. M. Strategic Considerations in the Design of a Screening System for Substructure Searches of Chemical Structure Files J. Chem. Doc. 1973, 13, 153-157
    • (1973) J. Chem. Doc. , vol.13 , pp. 153-157
    • Adamson, G.W.1    Cowell, J.2    Lynch, M.F.3    McLure, A.H.W.4    Town, W.G.5    Yapp, A.M.6
  • 14
    • 0012703034 scopus 로고
    • A method for the automatic classification of chemical structures
    • Adamson, G. W.; Bush, J. A. A Method for the Automatic Classification of Chemical structures Inf. Storage Retr. 1973, 9, 561-568
    • (1973) Inf. Storage Retr. , vol.9 , pp. 561-568
    • Adamson, G.W.1    Bush, J.A.2
  • 15
    • 0002728955 scopus 로고
    • Implementation of nearest neighbor searching in an online chemical structure search system
    • Willett, P.; Winterman, V.; Bawden, D. Implementation of Nearest Neighbor Searching in an Online Chemical Structure Search System J. Chem. Inf. Comput. Sci. 1986, 26, 36-41
    • (1986) J. Chem. Inf. Comput. Sci. , vol.26 , pp. 36-41
    • Willett, P.1    Winterman, V.2    Bawden, D.3
  • 16
    • 18344379900 scopus 로고    scopus 로고
    • PowerMV: A software environment for molecular viewing, descriptor generation, data analysis and hit evaluation
    • Liu, K.; Feng, J.; Young, S. R. PowerMV: A Software Environment for Molecular Viewing, Descriptor Generation, Data Analysis and Hit Evaluation J. Chem. Inf. Comput. Sci. 2005, 45, 515-522
    • (2005) J. Chem. Inf. Comput. Sci. , vol.45 , pp. 515-522
    • Liu, K.1    Feng, J.2    Young, S.R.3
  • 17
    • 60349100337 scopus 로고    scopus 로고
    • Methods for computer-aided chemical biology. Part 4: Selectivity searching for ion channel ligands and mapping of molecular fragments as selectivity markers
    • Ahmed, H. E. A.; Geppert, H.; Stumpfe, D.; Lounkine, E.; Bajorath, J. Methods for Computer-aided Chemical Biology. Part 4: Selectivity Searching for Ion Channel Ligands and Mapping of Molecular Fragments as Selectivity Markers Chem. Biol. Drug Des. 2009, 73, 273-282
    • (2009) Chem. Biol. Drug Des. , vol.73 , pp. 273-282
    • Ahmed, H.E.A.1    Geppert, H.2    Stumpfe, D.3    Lounkine, E.4    Bajorath, J.5
  • 20
    • 13844312649 scopus 로고    scopus 로고
    • ZINC - A free database of commercially available compounds for virtual screening
    • Irwin, J. J.; Shoichet, B. K. ZINC-A Free Database of Commercially Available Compounds for Virtual Screening J. Chem. Inf. Model. 2005, 45, 177-182
    • (2005) J. Chem. Inf. Model. , vol.45 , pp. 177-182
    • Irwin, J.J.1    Shoichet, B.K.2
  • 21
    • 2942700377 scopus 로고    scopus 로고
    • Comparison of fingerprint-based methods for virtual screening using multiple bioactive reference structures
    • Hert, J.; Willet, P.; Wilton, D. J. Comparison of Fingerprint-based Methods for Virtual Screening Using Multiple Bioactive Reference Structures J. Chem. Inf. Comput. Sci. 2004, 44, 1177-1185
    • (2004) J. Chem. Inf. Comput. Sci. , vol.44 , pp. 1177-1185
    • Hert, J.1    Willet, P.2    Wilton, D.J.3
  • 24
    • 39449093724 scopus 로고    scopus 로고
    • Balancing complexity effects in fingerprint similarity searching
    • Wang, Y.; Bajorath, J. Balancing Complexity Effects in Fingerprint Similarity Searching J. Chem. Inf. Model. 2008, 48, 75-84
    • (2008) J. Chem. Inf. Model. , vol.48 , pp. 75-84
    • Wang, Y.1    Bajorath, J.2
  • 25
    • 4444262413 scopus 로고    scopus 로고
    • A minimalist approach to fragment-based ligand design using common rings and linkers: Application to kinase inhibitors
    • Aronov, A.; Bemis, G. W. A Minimalist Approach to Fragment-Based Ligand Design Using Common Rings and Linkers: Application to Kinase Inhibitors Proteins: Struct., Funct., Bioinf. 2004, 57, 36-50
    • (2004) Proteins: Struct., Funct., Bioinf. , vol.57 , pp. 36-50
    • Aronov, A.1    Bemis, G.W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.