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Volumn 155, Issue 5, 2010, Pages 675-684

Genomic and biological characterization of chiltepín yellow mosaic virus, a new tymovirus infecting Capsicum annuum var. aviculare in Mexico

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

EID: 77951979335     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-010-0639-7     Document Type: Article
Times cited : (14)

References (55)
  • 2
    • 0035843596 scopus 로고    scopus 로고
    • Genetic structure and differentiation of wild and domesticated populations of Capsicum annuum (Solanaceae) from Mexico
    • Hernández-Verdugo S, Luna-Reyes R, Oyama K (2001) Genetic structure and differentiation of wild and domesticated populations of Capsicum annuum (Solanaceae) from Mexico. Plant Syst Evol 226: 129-142.
    • (2001) Plant Syst Evol , vol.226 , pp. 129-142
    • Hernández-Verdugo, S.1    Luna-Reyes, R.2    Oyama, K.3
  • 3
    • 0036284743 scopus 로고    scopus 로고
    • Genetic diversity and similarity revealed via molecular analysis among and within an in situ population and ex situ accessions of chiltepin (Capsicum annuum var. glabriusculum)
    • Votava EJ, Nabham GP, Bosland PW (2002) Genetic diversity and similarity revealed via molecular analysis among and within an in situ population and ex situ accessions of chiltepin (Capsicum annuum var. glabriusculum). Conserv Genetics 3: 123-129.
    • (2002) Conserv Genetics , vol.3 , pp. 123-129
    • Votava, E.J.1    Nabham, G.P.2    Bosland, P.W.3
  • 7
    • 0007647969 scopus 로고
    • Allelism of genes controlling resistance to TMV in Capsicum
    • Boukema RW (1980) Allelism of genes controlling resistance to TMV in Capsicum. Euphytica 29: 433-439.
    • (1980) Euphytica , vol.29 , pp. 433-439
    • Boukema, R.W.1
  • 8
    • 0030831989 scopus 로고    scopus 로고
    • Proposed revision of nomenclature for potyvirus resistance genes in Capsicum
    • Kyle MM, Palloix A (1997) Proposed revision of nomenclature for potyvirus resistance genes in Capsicum. Euphytica 97: 183-188.
    • (1997) Euphytica , vol.97 , pp. 183-188
    • Kyle, M.M.1    Palloix, A.2
  • 9
    • 0003290261 scopus 로고    scopus 로고
    • Screening wild plants of Capsicum annuum for resistance to pepper huasteco virus (PHV): Presence of viral DNA and differentiation among populations
    • Hernández-Verdugo S, Guevara-González RG, Rivera-Bustamente RF, Oyama K (2001) Screening wild plants of Capsicum annuum for resistance to pepper huasteco virus (PHV): presence of viral DNA and differentiation among populations. Euphytica 122: 31-36.
    • (2001) Euphytica , vol.122 , pp. 31-36
    • Hernández-Verdugo, S.1    Guevara-González, R.G.2    Rivera-Bustamente, R.F.3    Oyama, K.4
  • 10
    • 0037371168 scopus 로고    scopus 로고
    • Interactions Between Geminiviruses in a naturally occurring mixture: Pepper huasteco virus and Pepper golden mosaic virus
    • Méndez-Lozano J, Torres-Pacheco I, Fauquet CM, Rivera-Bustamante RF (2003) Interactions Between Geminiviruses in a naturally occurring mixture: Pepper huasteco virus and Pepper golden mosaic virus. Phytopathology 93: 270-277.
    • (2003) Phytopathology , vol.93 , pp. 270-277
    • Méndez-Lozano, J.1    Torres-Pacheco, I.2    Fauquet, C.M.3    Rivera-Bustamante, R.F.4
  • 11
    • 0026603668 scopus 로고
    • Expression of ORF-69 of Turnip yellow mosaic virus is necessary for viral spread in plants
    • Bozarth CS, Weiland JJ, Dreher TW (1992) Expression of ORF-69 of Turnip yellow mosaic virus is necessary for viral spread in plants. Virology 187: 124-130.
    • (1992) Virology , vol.187 , pp. 124-130
    • Bozarth, C.S.1    Weiland, J.J.2    Dreher, T.W.3
  • 12
    • 2442604466 scopus 로고    scopus 로고
    • Viral virulence protein suppresses RNA silencing-mediated defense but upregulates the role of microRNA in host gene expression
    • Chen J, Li WX, Xie D, Peng JR, Ding SW (2004) Viral virulence protein suppresses RNA silencing-mediated defense but upregulates the role of microRNA in host gene expression. Plant Cell 16: 1302-1313.
    • (2004) Plant Cell , vol.16 , pp. 1302-1313
    • Chen, J.1    Li, W.X.2    Xie, D.3    Peng, J.R.4    Ding, S.W.5
  • 15
    • 69849087242 scopus 로고    scopus 로고
    • Tymoviruses
    • B. W. J. Mahy and M. H. V. Regenmortelvan (Eds.), London: Academic Press
    • Haenni AL, Dreher TW (2008) Tymoviruses. In: Mahy BWJ, van Regenmortel MHV (eds) Encyclopedia of virology, vol 5. Academic Press, London, pp 199-207.
    • (2008) Encyclopedia of Virology , vol.5 , pp. 199-207
    • Haenni, A.L.1    Dreher, T.W.2
  • 16
    • 0017579889 scopus 로고
    • Nucleotide sequence (n = 159) of the amino-acid-accepting 3′-OH extremity of turnip-yellow-mosaic-virus RNA and the last portion of its coat-protein cistron
    • Briand JP, Jonard G, Guilley H, Richards K, Hirth L (1977) Nucleotide sequence (n = 159) of the amino-acid-accepting 3′-OH extremity of turnip-yellow-mosaic-virus RNA and the last portion of its coat-protein cistron. Eur J Biochem 72: 453-463.
    • (1977) Eur J Biochem , vol.72 , pp. 453-463
    • Briand, J.P.1    Jonard, G.2    Guilley, H.3    Richards, K.4    Hirth, L.5
  • 17
    • 0031003753 scopus 로고    scopus 로고
    • Chayote mosaic, a new disease in Sechium edule caused by a tymovirus
    • Hord M, Villalobos W, Macaya-Lizano AV, Rivera C (1997) Chayote mosaic, a new disease in Sechium edule caused by a tymovirus. Plant Dis 81: 374-378.
    • (1997) Plant Dis , vol.81 , pp. 374-378
    • Hord, M.1    Villalobos, W.2    Macaya-Lizano, A.V.3    Rivera, C.4
  • 18
    • 20844454402 scopus 로고    scopus 로고
    • An analysis of host adaptation and its relationship with virulence in Cucumber mosaic virus
    • Sacristán S, Fraile A, Malpica JN, García-Arenal F (2005) An analysis of host adaptation and its relationship with virulence in Cucumber mosaic virus. Phytopathology 95: 827-833.
    • (2005) Phytopathology , vol.95 , pp. 827-833
    • Sacristán, S.1    Fraile, A.2    Malpica, J.N.3    García-Arenal, F.4
  • 19
    • 0031915525 scopus 로고    scopus 로고
    • Tailing and 3′-end labelling of RNA with yeast poly(A) polymerase and various nucleotides
    • Martin G, Keller W (1998) Tailing and 3′-end labelling of RNA with yeast poly(A) polymerase and various nucleotides. RNA 4: 226-230.
    • (1998) RNA , vol.4 , pp. 226-230
    • Martin, G.1    Keller, W.2
  • 20
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 21
    • 77951976197 scopus 로고    scopus 로고
    • Se-Al: sequence alignment editor
    • Rambaut A (1996) Se-Al: sequence alignment editor. http://evolve. zoo. ox. ac. uk/.
    • (1996)
    • Rambaut, A.1
  • 22
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: Testing the model of DNA substitution
    • Posada D, Crandall KA (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 23
    • 0000280422 scopus 로고
    • Analysis of double-stranded RNA for plant virus diagnosis
    • Valverde RA (1990) Analysis of double-stranded RNA for plant virus diagnosis. Plant Dis 74: 255-258.
    • (1990) Plant Dis , vol.74 , pp. 255-258
    • Valverde, R.A.1
  • 24
    • 0002072362 scopus 로고
    • Contribution à l'étude du virus de la mosaïque du concombre (CMV): Méthode de purification rapide du virus
    • Lot H, Marrou J, Quiot JB, Esvan C (1972) Contribution à l'étude du virus de la mosaïque du concombre (CMV): Méthode de purification rapide du virus. Ann Phytopathol 4: 25-38.
    • (1972) Ann Phytopathol , vol.4 , pp. 25-38
    • Lot, H.1    Marrou, J.2    Quiot, J.B.3    Esvan, C.4
  • 25
    • 0013840145 scopus 로고
    • The use of negative staining in the electron microscopy examination of plant viruses in crude extracts
    • Hitchborn JH, Hills GJ (1965) The use of negative staining in the electron microscopy examination of plant viruses in crude extracts. Virology 27: 528-540.
    • (1965) Virology , vol.27 , pp. 528-540
    • Hitchborn, J.H.1    Hills, G.J.2
  • 26
    • 0027504136 scopus 로고
    • Evolution and taxonomy of positive-strand RNA viruses: Implications of comparative analysis of amino acid sequences
    • Koonin EV, Dolja VV (1993) Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences. Crit Rev Biochem Mol Biol 28: 375-430.
    • (1993) Crit Rev Biochem Mol Biol , vol.28 , pp. 375-430
    • Koonin, E.V.1    Dolja, V.V.2
  • 27
    • 0028237497 scopus 로고
    • Identification of the essential cysteine and hystidine residues of the Turnip yellow mosaic virus protease
    • Bransom KL, Dreher TW (1994) Identification of the essential cysteine and hystidine residues of the Turnip yellow mosaic virus protease. Virology 187: 148-154.
    • (1994) Virology , vol.187 , pp. 148-154
    • Bransom, K.L.1    Dreher, T.W.2
  • 29
    • 20044369925 scopus 로고    scopus 로고
    • Molecular characterization of isolates of Anagris vein yellowing virus, Plantago mottle virus and Scrophularia mottle virus-comparison of various approaches for tymovirus classification
    • Koenig R, Pleij CWA, Lesemann D-E, Loss S, Vetten HJ (2005) Molecular characterization of isolates of Anagris vein yellowing virus, Plantago mottle virus and Scrophularia mottle virus-comparison of various approaches for tymovirus classification. Arch Virol 150: 2325-2338.
    • (2005) Arch Virol , vol.150 , pp. 2325-2338
    • Koenig, R.1    Pleij, C.W.A.2    Lesemann, D.-E.3    Loss, S.4    Vetten, H.J.5
  • 30
    • 0032188861 scopus 로고    scopus 로고
    • Transfer RNA mimicry among tymoviral genomic RNAs ranges from highly efficient to vestigial
    • Dreher TW, Goodwin JB (1998) Transfer RNA mimicry among tymoviral genomic RNAs ranges from highly efficient to vestigial. Nucleic Acids Res 26: 4356-4364.
    • (1998) Nucleic Acids Res , vol.26 , pp. 4356-4364
    • Dreher, T.W.1    Goodwin, J.B.2
  • 31
    • 63949084990 scopus 로고    scopus 로고
    • Plant virus emergence and evolution: Origins, new encounter scenarios, factors driving emergence, effects of changing world conditions, and prospects for control
    • Jones RAC (2009) Plant virus emergence and evolution: origins, new encounter scenarios, factors driving emergence, effects of changing world conditions, and prospects for control. Virus Res 141: 113-130.
    • (2009) Virus Res , vol.141 , pp. 113-130
    • Jones, R.A.C.1
  • 32
    • 33645093163 scopus 로고    scopus 로고
    • Virus infection and grazing exert counteracting influences on survivorship of native bunchgrass seedling competing with invasive exotics
    • Malmstrom CM, Stoner CJ, Brandenburg S, Newton LA (2006) Virus infection and grazing exert counteracting influences on survivorship of native bunchgrass seedling competing with invasive exotics. J Ecol 94: 264-275.
    • (2006) J Ecol , vol.94 , pp. 264-275
    • Malmstrom, C.M.1    Stoner, C.J.2    Brandenburg, S.3    Newton, L.A.4
  • 33
    • 8744226993 scopus 로고    scopus 로고
    • Pathogen spillover in disease epidemics
    • Power AG, Mitchell CE (2004) Pathogen spillover in disease epidemics. Am Naturalist 164: S79-S89.
    • (2004) Am Naturalist , vol.164
    • Power, A.G.1    Mitchell, C.E.2
  • 34
    • 77951975854 scopus 로고    scopus 로고
    • Index of viruses-Tymoviridae, Columbia University, New York
    • Index of viruses-Tymoviridae (2009) In: ICTVdB-The Universal Virus Database. Columbia University, New York. http://www. ictvonline. org.
    • (2009) ICTVdB-The Universal Virus Database
  • 36
    • 84985463264 scopus 로고
    • A taxonomic study of the host range of tymoviruses
    • Guy PL, Dale JL, Adena MA, Gibbs AJ (1984) A taxonomic study of the host range of tymoviruses. Plant Pathol 33: 337-346.
    • (1984) Plant Pathol , vol.33 , pp. 337-346
    • Guy, P.L.1    Dale, J.L.2    Adena, M.A.3    Gibbs, A.J.4
  • 39
    • 0026793857 scopus 로고
    • Conservation of the putative methyl-transferase domain: A hallmark of the 'Sindbis-like' supergroup of positive-strand RNA viruses
    • Rozanov MN, Koonin EV, Gorbalenya AE (1992) Conservation of the putative methyl-transferase domain: a hallmark of the 'Sindbis-like' supergroup of positive-strand RNA viruses. J Gen Virol 73: 2129-2134.
    • (1992) J Gen Virol , vol.73 , pp. 2129-2134
    • Rozanov, M.N.1    Koonin, E.V.2    Gorbalenya, A.E.3
  • 40
    • 0029963275 scopus 로고    scopus 로고
    • Identification of the cleavage site recognised by the turnip yellow mosaic virus protease
    • Bransom KL, Wallace SE, Dreher DW (1996) Identification of the cleavage site recognised by the turnip yellow mosaic virus protease. Virology 217: 404-406.
    • (1996) Virology , vol.217 , pp. 404-406
    • Bransom, K.L.1    Wallace, S.E.2    Dreher, D.W.3
  • 41
    • 0029109437 scopus 로고
    • Papain-like proteinase of Turnip yellow mosaic virus: A prototype of a new viral proteinase group
    • Rozanov MN, Drugeon G, Haenni A-L (1995) Papain-like proteinase of Turnip yellow mosaic virus: a prototype of a new viral proteinase group. Arch Virol 140: 273-288.
    • (1995) Arch Virol , vol.140 , pp. 273-288
    • Rozanov, M.N.1    Drugeon, G.2    Haenni, A.-L.3
  • 42
    • 35148842412 scopus 로고    scopus 로고
    • Proteolitic processing of Turnip yellow mosaic virus replication proteins and functional impact on infectivity
    • Jakubiec A, Drugeon G, Camborde L, Jupin I (2007) Proteolitic processing of Turnip yellow mosaic virus replication proteins and functional impact on infectivity. J Virol 81: 11402-11412.
    • (2007) J Virol , vol.81 , pp. 11402-11412
    • Jakubiec, A.1    Drugeon, G.2    Camborde, L.3    Jupin, I.4
  • 43
    • 0034469403 scopus 로고    scopus 로고
    • Identification and functional analysis of the Turnip yellow mosaic virus subgenomic promoter
    • Schirawski J, Voyatzakis A, Zaccomer B, Bernardi F, Haenni A (2000) Identification and functional analysis of the Turnip yellow mosaic virus subgenomic promoter. J Virol 74: 11073-11080.
    • (2000) J Virol , vol.74 , pp. 11073-11080
    • Schirawski, J.1    Voyatzakis, A.2    Zaccomer, B.3    Bernardi, F.4    Haenni, A.5
  • 44
    • 0030462822 scopus 로고    scopus 로고
    • Protonable hairpins are conserved in the 5′-untranslated region of tymovirus RNAs
    • Hellendoorn K, Mihiels PJA, Biutenhuis R, Pleij CWA (1996) Protonable hairpins are conserved in the 5′-untranslated region of tymovirus RNAs. Nucleic Acids Res 24: 4910-4917.
    • (1996) Nucleic Acids Res , vol.24 , pp. 4910-4917
    • Hellendoorn, K.1    Mihiels, P.J.A.2    Biutenhuis, R.3    Pleij, C.W.A.4
  • 45
    • 0030748943 scopus 로고    scopus 로고
    • A functional role for the conserved protonable hairpins in the 5′-untranslated region of Turnip yellow mosaic virus RNA
    • Hellendoorn K, Verlaan PWG, Pleij CWA (1997) A functional role for the conserved protonable hairpins in the 5′-untranslated region of Turnip yellow mosaic virus RNA. J Virol 71: 8774-8779.
    • (1997) J Virol , vol.71 , pp. 8774-8779
    • Hellendoorn, K.1    Verlaan, P.W.G.2    Pleij, C.W.A.3
  • 46
    • 64849116441 scopus 로고    scopus 로고
    • The 5′-UTR of Turnip yellow mosaic virus does not include a critical encapsidation signal
    • Shin HI, Tzanetakis IE, Dreher TW, Cho TJ (2009) The 5′-UTR of Turnip yellow mosaic virus does not include a critical encapsidation signal. Virology 387: 427-435.
    • (2009) Virology , vol.387 , pp. 427-435
    • Shin, H.I.1    Tzanetakis, I.E.2    Dreher, T.W.3    Cho, T.J.4
  • 47
    • 0030273446 scopus 로고    scopus 로고
    • Secondary structure model of the coat protein gene of Turnip yellow mosaic virus RNA: Long C-rich, single stranded regions
    • Hellendoorn K, Mat AW, Gultyaev AP, Pleij CWA (1996) Secondary structure model of the coat protein gene of Turnip yellow mosaic virus RNA: long C-rich, single stranded regions. Virology 224: 43-54.
    • (1996) Virology , vol.224 , pp. 43-54
    • Hellendoorn, K.1    Mat, A.W.2    Gultyaev, A.P.3    Pleij, C.W.A.4
  • 48
    • 20044396168 scopus 로고    scopus 로고
    • Nemesia ring necrosis virus: A new tymovirus with a genomic RNA having a histidylatable tobamovirus-like 3′ end
    • Koenig R, Barends S, Gutyaev AP, Lesemann D-E, Vetten HJ, Loss S, Pleij CWA (2005) Nemesia ring necrosis virus: a new tymovirus with a genomic RNA having a histidylatable tobamovirus-like 3′ end. J Gen Virol 86: 1827-1833.
    • (2005) J Gen Virol , vol.86 , pp. 1827-1833
    • Koenig, R.1    Barends, S.2    Gutyaev, A.P.3    Lesemann, D.-E.4    Vetten, H.J.5    Loss, S.6    Pleij, C.W.A.7
  • 49
    • 0040322451 scopus 로고
    • In search of the origins of viral genes
    • A. Gibbs, C. A. Calisher, F. García-Arenal (Eds.), Cambridge: Cambridge University Press
    • Gibbs A, Keese PK (1995) In search of the origins of viral genes. In: Gibbs A, Calisher CA, García-Arenal F (eds) Molecular basis of virus evolution. Cambridge University Press, Cambridge, pp 76-90.
    • (1995) Molecular Basis of Virus Evolution , pp. 76-90
    • Gibbs, A.1    Keese, P.K.2
  • 50
  • 51
    • 0026681071 scopus 로고
    • Comparisons of the genomic sequences of Erysimum latent virus and other tymoviruses: A search for the molecular basis of their host specificities
    • Srifah P, Keese P, Weiller G, Gibbs A (1992) Comparisons of the genomic sequences of Erysimum latent virus and other tymoviruses: a search for the molecular basis of their host specificities. J Gen Virol 73: 1437-1447.
    • (1992) J Gen Virol , vol.73 , pp. 1437-1447
    • Srifah, P.1    Keese, P.2    Weiller, G.3    Gibbs, A.4
  • 52
    • 69849097985 scopus 로고    scopus 로고
    • A tymovirus with an atypical 3′-UTR illuminates the possibilities for 3′-UTR evolution
    • Tzanetakis IE, Tsai C-H, Martin RR, Dreher TW (2009) A tymovirus with an atypical 3′-UTR illuminates the possibilities for 3′-UTR evolution. Virology 392: 238-245.
    • (2009) Virology , vol.392 , pp. 238-245
    • Tzanetakis, I.E.1    Tsai, C.-H.2    Martin, R.R.3    Dreher, T.W.4
  • 53
    • 4544225854 scopus 로고    scopus 로고
    • Tymoviruses
    • A. Granoff and R. Webster (Eds.), London: Academic Press
    • Gibbs A (1999) Tymoviruses. In: Granoff A, Webster R (eds) Encyclopedia of virology, vol 3. Academic Press, London, pp 1850-1853.
    • (1999) Encyclopedia of Virology , vol.3 , pp. 1850-1853
    • Gibbs, A.1
  • 54
    • 63749108887 scopus 로고    scopus 로고
    • Non-cultivated plants of the Tallgrass Prairie Preserve of northeastern Oklahoma frequently contain virus-like sequences in particulate fractions
    • Muthukumar V, Melcher U, Pierce M, Wiley GB, Roe BA, Palmer MW, Thapa V, Ali A, Ding T (2009) Non-cultivated plants of the Tallgrass Prairie Preserve of northeastern Oklahoma frequently contain virus-like sequences in particulate fractions. Virus Res 141: 169-173.
    • (2009) Virus Res , vol.141 , pp. 169-173
    • Muthukumar, V.1    Melcher, U.2    Pierce, M.3    Wiley, G.B.4    Roe, B.A.5    Palmer, M.W.6    Thapa, V.7    Ali, A.8    Ding, T.9
  • 55
    • 0018844168 scopus 로고
    • A plant virus that partially protects its wild legume host against herbivores
    • Gibbs AJ (1980) A plant virus that partially protects its wild legume host against herbivores. Intervirol 13: 42-47.
    • (1980) Intervirol , vol.13 , pp. 42-47
    • Gibbs, A.J.1


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