메뉴 건너뛰기




Volumn 26, Issue 7, 2010, Pages 925-931

Standard virtual biological parts: A repository of modular modeling components for synthetic biology

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA;

EID: 77951969603     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq063     Document Type: Article
Times cited : (79)

References (24)
  • 1
    • 67149131701 scopus 로고    scopus 로고
    • CellML metadata standards, associated tools and repositories
    • Beard, D.A. et al. (2009) CellML metadata standards, associated tools and repositories. Trans. R. Soc. A., 367, 1845-1867.
    • (2009) Trans. R. Soc. A. , vol.367 , pp. 1845-1867
    • Beard, D.A.1
  • 2
    • 77951939984 scopus 로고    scopus 로고
    • Definitionsand Measures of Performance for Standard Biological Parts
    • Available at (last accessed date March 1)
    • Braff, J.C.et al. (2005)DefinitionsandMeasuresofPerformanceforStandardBiological Parts. In International Conference Systems Biology (ICSB 2005) Poster. Available athttp://hdl.handle.net/1721.1/31335 (last accessed date March 1, 2010).
    • (2010) International Conference Systems Biology (ICSB 2005) Poster
    • Braff, J.C.1
  • 3
    • 46949091517 scopus 로고    scopus 로고
    • Refinement and standardization of synthetic biological parts and devices
    • Canton, B. et al. (2008) Refinement and standardization of synthetic biological parts and devices. Nature Biotechnol., 26, 787-793.
    • (2008) Nature Biotechnol. , vol.26 , pp. 787-793
    • Canton, B.1
  • 4
    • 41349098538 scopus 로고    scopus 로고
    • Laying the foundations for a bio-economy
    • Carlson, R. (2007) Laying the foundations for a bio-economy. Sys. Syn. Biol., 1, 109-117.
    • (2007) Sys. Syn. Biol. , vol.1 , pp. 109-117
    • Carlson, R.1
  • 5
    • 46149103610 scopus 로고    scopus 로고
    • Modeling biological modularity with CellML
    • Cooling, M.T et al. (2008) Modeling biological modularity with CellML. IET Sys. Biol., 2, 73-79.
    • (2008) IET Sys. Biol. , vol.2 , pp. 73-79
    • Cooling, M.T.1
  • 6
    • 1342329447 scopus 로고    scopus 로고
    • An Overview of CellML 1.1, a biological model description language
    • Cuellar, A.A. et al. (2003) An Overview of CellML 1.1, a biological model description language. Simulation, 79, 740-747.
    • (2003) Simulation , vol.79 , pp. 740-747
    • Cuellar, A.A.1
  • 7
    • 45749111042 scopus 로고    scopus 로고
    • The BlenX Language: a tutorial
    • Bernado, M., Degano, P. and Zavattaro, G. (eds) Springer Berlin Heidelberg
    • Dematté, L. et al. (2008) The BlenX Language: a tutorial. In Bernado, M., Degano, P. and Zavattaro, G. (eds) Formal Methods for Computational Systems Biology, Vol. 5016. Springer Berlin, Heidelberg, pp. 313-365.
    • (2008) Formal Methods for Computational Systems Biology , vol.5016 , pp. 313-365
    • Dematté, L.1
  • 8
    • 66149172363 scopus 로고    scopus 로고
    • Diversity-based, model-guided construction of synthetic gene networks with predicted functions
    • Ellis, T. et al. (2009) Diversity-based, model-guided construction of synthetic gene networks with predicted functions, Nature Biol., 27, 465-471.
    • (2009) Nature Biol. , vol.27 , pp. 465-471
    • Ellis, T.1
  • 9
    • 28544451327 scopus 로고    scopus 로고
    • Foundations for engineering biology
    • Endy, D. (2005) Foundations for engineering biology. Nature, 438, 449-453.
    • (2005) Nature , vol.438 , pp. 449-453
    • Endy, D.1
  • 10
    • 48349089965 scopus 로고    scopus 로고
    • CellML and associated tools and techniques
    • Garny, A. et al. (2008) CellML and associated tools and techniques. Phil. Trans. R. Soc. Lon. A, 366, 3017-3043.
    • (2008) Phil. Trans. R. Soc. Lon. A , vol.366 , pp. 3017-3043
    • Garny, A.1
  • 11
    • 51449095986 scopus 로고    scopus 로고
    • Genetic design: rising above the sequence
    • Goler, J.A. et al. (2008) Genetic design: rising above the sequence. Trends Biotechnol., 26, 538-544.
    • (2008) Trends Biotechnol. , vol.26 , pp. 538-544
    • Goler, J.A.1
  • 12
    • 37249032831 scopus 로고    scopus 로고
    • Engineering ingenuity at iGEM
    • Goodman, C. (2008) Engineering ingenuity at iGEM. Nature Chem. Biol., 4, 13.
    • (2008) Nature Chem. Biol. , vol.4 , pp. 13
    • Goodman, C.1
  • 13
    • 0037336350 scopus 로고    scopus 로고
    • Integration from proteins to organs: the Physiome Project
    • Hunter, P.J. and Borg, T.K. (2003) Integration from proteins to organs: the Physiome Project. Nat. Rev. Mol. Cell Biol., 4, 237-243.
    • (2003) Nat. Rev. Mol. Cell Biol. , vol.4 , pp. 237-243
    • Hunter, P.J.1    Borg, T.K.2
  • 14
    • 33746862975 scopus 로고    scopus 로고
    • Engineering novel life
    • [Epub ahead of print, doi:10.1038/msb4100028 pmid:16729055, September 13, 2005]
    • Knight, T.F. (2005) Engineering novel life. Mol. Syst. Biol., 1, [Epub ahead of print, doi:10.1038/msb4100028 pmid:16729055, September 13, 2005].
    • (2005) Mol. Syst. Biol. , vol.1
    • Knight, T.F.1
  • 15
    • 33644877164 scopus 로고    scopus 로고
    • BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems
    • Le Novere, N. et al. (2006) BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems. Nucleic Acids Res., 34(Suppl. 1), D689-D691.
    • (2006) Nucleic Acids Res. , vol.34 , Issue.SUPPL. 1
    • Le Novere, N.1
  • 16
    • 50549103571 scopus 로고    scopus 로고
    • Computational design of synthetic gene circuits with composable parts
    • Marchisio, M.A. and Stelling, J. (2008) Computational design of synthetic gene circuits with composable parts. Bioinformatics, 24, 1903-1910.
    • (2008) Bioinformatics , vol.24 , pp. 1903-1910
    • Marchisio, M.A.1    Stelling, J.2
  • 17
    • 61449140264 scopus 로고    scopus 로고
    • PROMOT: modular modeling for systems biology
    • Mirschel, S. et al. (2009) PROMOT: modular modeling for systems biology. Bioinformatics, 25, 687-689.
    • (2009) Bioinformatics , vol.25 , pp. 687-689
    • Mirschel, S.1
  • 18
    • 33751348074 scopus 로고    scopus 로고
    • Computational multiscale modeling in the IUPS Physiome Project: modeling cardiac electromechanics
    • Nickerson, D.P. et al. (2006) Computational multiscale modeling in the IUPS Physiome Project: modeling cardiac electromechanics. IBM J. Res. Dev., 50, 617-630.
    • (2006) IBM J. Res. Dev. , vol.50 , pp. 617-630
    • Nickerson, D.P.1
  • 19
    • 50549090249 scopus 로고    scopus 로고
    • Targeted development of registries of biological parts
    • Peccoud, J. et al. (2008) Targeted development of registries of biological parts. PLoS ONE, 3, e2671.
    • (2008) PLoS ONE , vol.3
    • Peccoud, J.1
  • 20
    • 46249085749 scopus 로고    scopus 로고
    • Asmparts: assembly of biological model parts
    • Rodrigo, G. et al. (2007) Asmparts: assembly of biological model parts. Sys. Syn. Biol., 1, 167-170.
    • (2007) Sys. Syn. Biol. , vol.1 , pp. 167-170
    • Rodrigo, G.1
  • 21
    • 67650242026 scopus 로고    scopus 로고
    • Modular assembly of cell systems biology models using P systems
    • Romero-Campero, F.J. et al. (2009) Modular assembly of cell systems biology models using P systems. Int. J. Found. Comp. Sci., 20, 427-442.
    • (2009) Int. J. Found. Comp. Sci. , vol.20 , pp. 427-442
    • Romero-Campero, F.J.1
  • 22
    • 46249087691 scopus 로고    scopus 로고
    • Registry of BioBricks models using CellML
    • Rouilly, V. et al. (2007) Registry of BioBricks models using CellML. BMC Sys. Biol., 1(Suppl. 1), P79.
    • (2007) BMC Sys. Biol. , vol.1 , Issue.SUPPL. 1
    • Rouilly, V.1
  • 23
    • 35448944695 scopus 로고    scopus 로고
    • Methods for simulating the dynamics of complex biological processes
    • Correia, D. J. J. and Detrich, H. W. (eds) Academic Press San Diego
    • Schilstra, M.J. et al. (2008) Methods for simulating the dynamics of complex biological processes. In Correia, D.J.J. and Detrich, H.W. (eds) BiophysicalTools for Biologists. Volume One: InVitro Techniques. Vol. 84.Academic Press, San Diego, pp. 807-842.
    • (2008) BiophysicalTools for Biologists. Volume One: In Vitro Techniques , vol.84 , pp. 807-842
    • Schilstra, M.J.1
  • 24
    • 64749105616 scopus 로고    scopus 로고
    • Facilitating modularity and reuse: guidelines for structuring CellML 1.1 models by isolating common biophysical concepts
    • Wimalaratne, S.M. et al. (2009) Facilitating modularity and reuse: guidelines for structuring CellML 1.1 models by isolating common biophysical concepts. Exp. Physiol., 94, 472-485
    • (2009) Exp. Physiol. , vol.94 , pp. 472-485
    • Wimalaratne, S.M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.