Filtering error from SOLiD output

Bioinformatics

Volumn 26, Issue 6, 2010, Pages 849-850

  Sasson, Ariella ^a,b   Michael, Todd P ^a,b,c  

^a RUTGERS UNIVERSITY   (United States)

^b RUTGERS UNIVERSITY   (United States)

^c Rutgers University   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER PROGRAM; DNA SEQUENCE; GENETIC DATABASE; METHODOLOGY; SINGLE NUCLEOTIDE POLYMORPHISM;

DATABASES, GENETIC; POLYMORPHISM, SINGLE NUCLEOTIDE; SEQUENCE ANALYSIS, DNA; SOFTWARE;

EID: 77951964897     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq045     Document Type: Note

References (7)

1. Chaisson, M.J.P. et al. (2009) De novo fragment assembly with short mate-paired reads: Does read length matter? Genome Res., 19, 336-346.
2. Hyland, F.C.L. et al. (2009) Dibase sequencing allows accurate SNP detection at moderate and low coverage with diBayes algorithm. Available at http://www3.appliedbiosystems.com/cms/groups/mcb_marketing/documents/generaldocuments/cms_065554.pdf.
3. McKernan, K.J. et al. (2009) Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding. Genome Res., 19, 1527-1541.
4. Ondov, B.D. et al. (2008) Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications. Bioinformatics, 24, 2776-2777.
5. Pettersson, E. et al. (2009) Generations of sequencing technologies. Genomics, 93, 105-111.
6. Smith, D.R. et al. (2008) Rapid whole-genome mutational profiling using next-generation sequencing technologies. Genome Res., 18, 1638-1642.
7. Valouev, A. et al. (2008) A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning. Genome Res., 18, 1051-1063.