Spatial and temporal variability of the bacterial community in different chemotypes of the New Zealand marine sponge Mycale hentscheli

FEMS Microbiology Ecology

Volumn 72, Issue 3, 2010, Pages 328-342

  Anderson, Sally A ^a   Northcote, Peter T ^b   Page, Michael J ^a  

^a NATIONAL INSTITUTE OF WATER AND ATMOSPHERIC RESEARCH   (New Zealand)

^b VICTORIA UNIVERSITY OF WELLINGTON   (New Zealand)

Author keywords

Bacteria; DGGE; Diversity; Sponge; Sponge metabolite; T RFLP

Indexed keywords

BACTERIAL DNA; RNA 16S;

BACTERIUM; BIOACTIVITY; DNA FINGERPRINTING; ELECTROKINESIS; METABOLITE; MICROBIAL COMMUNITY; POLYMORPHISM; SAMPLING; SPATIOTEMPORAL ANALYSIS; SPECIES DIVERSITY; SPONGE;

ANIMAL; ARTICLE; BACTERIUM; BIODIVERSITY; CLASSIFICATION; CLUSTER ANALYSIS; DNA FINGERPRINTING; DNA SEQUENCE; GENETICS; GEOGRAPHY; ISOLATION AND PURIFICATION; METHODOLOGY; MICROBIOLOGY; NEW ZEALAND; POLYACRYLAMIDE GEL ELECTROPHORESIS; REPRODUCIBILITY; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SPONGE (PORIFERA); TIME;

ANIMALS; BACTERIA; BIODIVERSITY; CLUSTER ANALYSIS; DNA FINGERPRINTING; DNA, BACTERIAL; ELECTROPHORESIS, POLYACRYLAMIDE GEL; GEOGRAPHY; NEW ZEALAND; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; PORIFERA; REPRODUCIBILITY OF RESULTS; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; TIME FACTORS;

NEW ZEALAND;

BACTERIA (MICROORGANISMS); MYCALE HENTSCHELI;

EID: 77951948364     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/j.1574-6941.2010.00869.x     Document Type: Article

References (53)

1. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W Lipman DJ (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res 25 : 3389 3402. (Pubitemid 27359211)
2. Bergquist PR Fromont PJ (1988) The Marine Fauna of New Zealand: Porifera, Demospongiae, Part 4 (Poecilosclerida). New Zealand Oceanographic Institute Memoir 96. DSIR, Wellington.
3. Blunt JW, Copp BR, Hu VP, Munro MHG, Northcote P Prinsep MR (2009) Marine natural products. Nat Prod Rep 26 : 170 244.
4. Burja AM, Webster NS, Murphy PT Hill RT (1999) Microbial symbionts of Great Barrier Reef sponges. Mem Queensl Mus 44 : 63 76.
5. Chakravorty S, Helb D, Burday M, Connell N Alland D (2007) A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria. J Microbiol Methods 69 : 330 339. (Pubitemid 46566457)
6. Chanas B, Pawlik JR, Lindel T Fenical W (1996) Chemical defense of the Caribbean sponge Agelas clathrodes (Schmidt). J Exp Mar Biol Ecol 208 : 185 196. (Pubitemid 27043130)
7. Davidson SK, Allen SW, Lim GE, Anderson CM Haygood MG (2001) Evidence for biosynthesis by the bacterial symbiont 'Candidatus Endobugula sertula' of the bryozoan Bugula neritina. Appl Environ Microb 67 : 4531 4537.
8. Duckworth A Battershill CN (2003) Sponge aquaculture for the production of biologically active metabolites: the influence of farming protocols and environment. Aquaculture 221 : 311 329. (Pubitemid 36409079)
9. Engel S Pawlik JR (2000) Allelopathic activities of sponge extracts. Mar Ecol-Prog Ser 207 : 273 281. (Pubitemid 32053444)
10. Haygood MG Davidson SK (1997) Small-subunit rRNA genes and in situ hybridization with oligonucleotides specific for bacterial symbionts in the larvae of the Bryozoan Bugula neritina and proposal of 'Candidatus Endobugula sertula'. Appl Environ Microb 63 : 4612 4616.
11. Haygood MG, Schmidt EW, Davidson SK Faulkner DJ (1999) Microbial symbionts of marine invertebrates: opportunities for microbial biotechnology. J Mol Microb Biotech 1 : 33 43.
12. Hentschel U, Schmidt EW, Wagner M, Fieseler L, Gernert C Hacker J (2001) Isolation and phylogenetic analysis of bacteria with antimicrobial activities from the Mediterranean sponges Aplysina aerophoba and Asplysina cavernicola. FEMS Microbiol Ecol 35 : 305 312. (Pubitemid 32320007)
13. Hentschel U, Hopke J, Horn M, Friedrich AB, Wagner M, Hacker J Moore BS (2002) Molecular evidence for a uniform microbial community in sponges from different oceans. Appl Environ Microb 68 : 4431 4440. (Pubitemid 34988126)
14. Hentschel U, Usher KM Taylor MW (2006) Marine sponges as microbiological fermenters. FEMS Microbiol Ecol 55 : 167 177.
15. Hill M, Hill A, Lopez N Harriott O (2006) Sponge-specific bacterial symbionts in the Caribbean sponge, Chondrilla nucula (Demospongiae, Chondrosida). Mar Biol 148 : 1221 1230.
16. Horswell J, Cordiner SJ, Maas EW, Martin TM, Sutherland KBW, Spier TW, Nogales B Osborn AM (2002) Forensic comparison of soils by bacterial community DNA profiling. J Forensic Sci 47 : 350 353. (Pubitemid 34206098)
17. Imhoff JF Stohr R (2003) Sponge-associated bacteria: general overview and special aspects of bacteria associated with Halichondria panicea. Sponges (Porifera) (Muller WEG, ed), pp. 35 57. Springer-Verlag
18. Kelly SR, Jensen PR, Henkel TP, Fenical W Pawlik JR (2003) Effects of Caribbean sponge extracts on bacterial attachment. Aquat Microb Ecol 31 : 175 182. (Pubitemid 36391592)
19. Lane DJ (1991) 16S/23S rRNA sequencing. Nucleic Acid Techniques in Bacterial Systematics (Stackebrandt E Goodfellow M, eds), pp. 115 147. John Wiley and Sons Ltd
20. Lee OO Qian P (2004) Potential control of bacterial epibiosis on the surface of the sponge Mycale adhaerens. Aquat Microb Ecol 34 : 11 21. (Pubitemid 39098353)
21. Lee OO, Lau SCK Qian P (2006) Consistent bacterial community structure associated with the surface of the sponge Mycale adhaerens Bowerbank. Microb Ecol 65 : 693 707. (Pubitemid 44924007)
22. Maidak BL, Olsen GJ, Larsen N, Overbeek R, McCaughey MJ Woese CR (1997) The RDP (Ribosomal Database Project). Nucleic Acids Res 25 : 109 111. (Pubitemid 27303161)
23. Marchesi JR, Sato T, Weightman AJ, Martin TA, Fry JC, Hiom SJ Wade WG (1998) Design and evaluation of useful bacterium-specific PCR primers that amplify genes encoding for bacterial 16S rRNA. Appl Environ Microb 64 : 795 799. (Pubitemid 28079862)
24. Meyer B Kuever J (2008) Phylogenetic diversity and spatial distribution of the microbial community associated with the Caribbean deep-water sponge Polymastia cf. corticata by 16S rRNA, aprA, and amoA gene analysis. Microb Ecol 56 : 306 321.
25. Moore BS (1999) Biosynthesis of marine natural products: microorganisms and microalgae. Nat Prod Rep 16 : 653 674.
26. Northcote PT, Blunt JW Munro MHG (1991) Pateamine: A potent cytotoxin from the New Zealand marine sponge, Mycale sp. Tetrahedron Lett 32 : 6411 6414.
27. Olson JB McCarthy PJ (2005) Associated bacterial communities of two deep-water sponges. Aquat Microb Ecol 39 : 47 55.
28. Olson JB, Lord C McCarthy PJ (2000) Improved recoverability of microbial colonies from marine environmental samples. Microb Ecol 40 : 139 147.
29. Osborn AM, Edward R, Moore B Timmis KN (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environ Microbiol 2 : 39 50.
30. Page MJ, Northcote PT, Webb VL, Mackey S Handley SJ (2005a) Aquaculture trials for the production of biologically active metabolites in the New Zealand sponge Mycale hentscheli (Demospongiae: Poeciloscleridia). Aquaculture 1-2 : 256 269.
31. Page MJ, West L, Northcote P, Battershill CN Kelly M (2005b) Spatial and temporal variability of cytotoxic metabolites in populations of the New Zealand marine sponge Mycale hentscheli. J Chem Ecol 31 : 1161 1174. (Pubitemid 40870143)
32. Pawlik JR, Chanas B, Toonen RJ Fenical W (1995) Defenses of Caribbean sponges against predatory reef fish. I. Chemical deterrency. Mar Ecol-Prog Ser 127 : 183 194. (Pubitemid 26453120)
33. Perry NB, Blunt JW, Munro MHG Pannell LK (1988) Mycalamide A, an antiviral compound from a New Zealand sponge of the genus Mycale. J Am Chem Soc 110 : 4850 4851.
34. Piel J (2002) A polyketide synthase-peptide synthetase gene cluster from an uncultured bacterial symbiont of Paederus beetles. P Natl Acad Sci USA 99 : 14002 14007. (Pubitemid 35257614)
35. Piel J (2009) Metabolites from symbiotic bacteria. Nat Prod Rep 26 : 338 362. (Pubitemid 39182706)
36. Piel J, Butzke D, Fusetani N, Hui DQ, Platzer M, Wen GP Matsunaga S (2005) Exploring the chemistry of uncultivated bacterial symbionts: Antitumor polyketides of the pederin family. J Nat Prod 68 : 472 479. (Pubitemid 40545498)
37. Salomon CE, Magarvey NA Sherman DH (2004) Merging the potential of microbial genetics with biological and chemical diversity: An even brighter future for marine natural product drug discovery. Nat Prod Rep 21 : 105 121.
38. Sambrook J Russell DW (2001) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press
39. Santavy DL, Willenz P Colwell RR (1990) Phenotypic study of bacteria associated with Caribbean sclerosponge, Ceratoporella nicholsoni. Appl Environ Microb 56 : 1750 1762. (Pubitemid 20202141)
40. Schmidt EW, Obraztsova AY, Davidson SK, Faulkner DJ Haygood MG (2000) Identification of the antifungal peptide-containing symbiont of the marine sponge Theonella swinhoei as a novel delta-proteobacterium, 'Candidatus Entotheonella palauensis'. Mar Biol 136 : 969 977.
41. Tannock GW, Munro K, Bibiloni R, Simon MA, Hargreaves P, Gopal P, Harmsen H Welling G (2004) Impact of consumption of oligosaccharide-containing biscuits on the fecal microbiota of humans. Appl Environ Microb 70 : 2129 2136. (Pubitemid 38500512)
42. Taylor MW, Schupp PJ, de Nys R, Kjelleberg S Steinberg PD (2005) Biogeography of bacteria associated with the marine sponge Cymbastela concentrica. Environ Microbiol 7 : 419 433. (Pubitemid 40290130)
43. Taylor MW, Radax RR, Steger D Wagner M (2007) Sponge-associated microorganisms: Evolution, ecology, and biotechnological potential. Microbiol Mol Biol R 71 : 295 347. (Pubitemid 46954308)
44. Thakur NL, Anil AC Muller WEG (2004) Culturable epibacteria of the marine sponge Ircinia fusca: temporal variations and their possible role in the epibacterial defense of the host. Aquat Microb Ecol 37 : 295 304.
45. Thiel V, Neulinger SC, Staufenberger T, Schmaljohann R Imhoff JF (2007) Spatial distribution of sponge-associated bacteria in the Mediterranean sponge Tethya aurantium. FEMS Microbiol Ecol 59 : 47 63. (Pubitemid 44952408)
46. Thompson JE, Murphy PT, Berquist PR Evans EA (1987) Environmentally induced variation in diterpene composition of the marine sponge Rhopaloeides odorabile. Biochem Syst Ecol 15 : 595 606.
47. Walter J, Tannock GW, Tilsala-Timisjarvi A, Rodtong S, Loach DM, Munro K Alatossava T (2000) Detection and identification of gastrointestinal Lactobacillus species by using denaturing gradient gel electrophoresis and species-specific PCR primers. Appl Environ Microb 66 : 297 303. (Pubitemid 30030531)
48. Webb VL Maas EW (2002) Sequence analysis of 16S rRNA gene of cyanobacteria associated with the marine sponge Mycale (Carmia) hentscheli. FEMS Microbiol Lett 207 : 43 47.
49. Webster NS Hill RT (2001) The culturable marine community of the Great Barrier Reef sponge Rhopaloeides odorabile is dominated by an α-Proteobacterium. Mar Biol 138 : 843 851.
50. Webster NS, Negri AP, Munro MM Battershill CN (2004) Diverse microbial communities inhabit Antarctic sponges. Environ Microbiol 6 : 288 300.
51. West LM, Northcote PT Battershill CN (2000a) Peloruside A: A potent cytotoxic macrolide isolated from the New Zealand marine sponge Mycale sp. J Org Chem 65 : 445 449. (Pubitemid 30061125)
52. West LM, Northcote PT, Hood KA, Miller JH Page MJ (2000b) Mycalamide D, a new cytotoxic amide from the New Zealand marine sponge Mycale species. J Nat Prod 63 : 707 709. (Pubitemid 30395541)
53. Wilkinson CR, Nowak M, Austin B Colwell RR (1981) Specificity of bacterial symbionts in Mediterranean and Great Barrier Reef sponges. Microb Ecol 7 : 13 21.