Cardiovascular flow simulation at extreme scale

Computational Mechanics

Volumn 46, Issue 1, 2010, Pages 71-72

  Zhou, Min ^a   Sahni, Onkar ^a   Kim, H Jin ^a   Figueroa, C Alberto ^b   Taylor, Charles A ^b   Shephard, Mark S ^a   Jansen, Kenneth E ^a  

^a RENSSELAER POLYTECHNIC INSTITUTE   (United States)

^b STANFORD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTATIONAL GEOMETRY; FLOW SIMULATION; HEMODYNAMICS; PHYSIOLOGICAL MODELS; SCALABILITY;

ABDOMINAL AORTA ANEURYSMS; CARDIOVASCULAR FLOW; CARDIOVASCULAR MODELS; CARDIOVASCULAR SIMULATIONS; COMPLEX GEOMETRIES; MASSIVELY PARALLELS; STRUCTURAL MODELS; TRANSITIONAL FLOW;

FLOW OF FLUIDS;

EID: 77951766899     PISSN: 01787675     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00466-009-0450-z     Document Type: Article

References (39)

1. Y Bazilevs JR Gohean TJR Hughes RD Moser Y Zhang 2009 Patientspecific isogeometric fluid-structure interaction analysis of thoracic aortic blood flow due to implantation of the jarvik 2000 left ventricular assist device Comp Methods Appl Mech Eng 198 3534 3550 10.1016/j.cma.2009.04.015 2571821
2. Bazilevs Y, Hsu M-C, Benson DJ, Sankaran S, Marsden AL (2009) Computational fluidstructure interaction: methods and application to a total cavopulmonary connection. Comput Mech (submitted)
3. Boman E, Devine K, Fisk LA, Heaphy R, Hendrickson B, Leung V, Vaughan C, Catalyurek U, Bozdag D, Mitchell W (1999) Zoltan home page. http://www.cs. sandia.gov/Zoltan
4. AN Brooks TJR Hughes 1982 Streamline upwind/petrov-galerkin formulations for convection dominated flows with particular emphasis on the incompressible Navier-Stokes equations Comp Methods Appl Mech Eng 32 199 259 10.1016/0045-7825(82)90071-8 679322
5. JR Cebral MA Castro JE Burgess RS Pergolizzi MJ Sheridan CM Putman 2005 Characterization of cerebral aneurysms for assessing risk of rupture by using patient-specific computational hemodynamics models AJNR Am J Neuroradiol 26 10 2550 2559
6. C Farhat P Geuzaine 2004 Design and analysis of robust ale time-integrators for the solution of unsteady flow problems on moving grids Comp Methods Appl Mech Eng 193 4073 4095 10.1016/j.cma.2003.09.027 2087005 (Pubitemid 39182514)
7. MA Fernandez P Le Tallec 2003 Linear stability analysis in fluid-structure interaction with transpiration. Part ii: numerical analysis and applications Comp Methods Appl Mech Eng 192 4837 4873 10.1016/j.cma.2003.08.001 2009489 (Pubitemid 37212353)
8. CA Figueroa IE Vignon-Clementel KE Jansen TJR Hughes CA Taylor 2006 A coupled momentum method for modeling blood flow in three-dimensional deformable arteries Comp Methods Appl Mech Eng 195 41-43 5685 5706 10.1016/j.cma.2005.11. 011 2243323 (Pubitemid 44177275)
9. L Formaggia JF Gerbeau F Nobile A Quarteroni 2002 Numerical treatment of defective boundary conditions for the Navier-Stokes equations SIAM J Numer Anal 40 1 376 401 10.1137/S003614290038296X 1921924
10. LP Franca SL Frey 1992 Stabilized finite element methods ii. the incompressible Navier-Stokes equations Comp Methods Appl Mech Eng 99 2-3 209 233 10.1016/0045-7825(92)90041-H 1186727
11. KE Jansen CH Whiting GM Hulbert 2000 Generalized-α method for integrating the filtered Navier-Stokes equations with a stabilized finite element method Comp Methods Appl Mech Eng 190 3-4 305 319 1808483
12. G Karypis V Kumar 1999 Parallel multilevel k-way partitioning scheme for irr. graphs SIAM Rev 41 278 300 10.1137/S0036144598334138 1684545
13. JF LaDisa LE Olson RC Molthen DA Hettrick PF Pratt MD Hardel JR Kersten DC Warltier PS Pagel 2005 Alterations in wall shear stress predict sites of neointimal hyperplasia after stent implantation in rabbit iliac arteries Am J Phys Heart Circ Phys 288 H2465 H2475 10.1152/ajpheart.01107.2004 (Pubitemid 40604136)
14. WK Laskey HG Parker VA Ferrari WG Kussmaul A Noordergraaf 1990 Estimation of total systemic arterial compliance in humans J Appl Physiol 69 1 112 119
15. Les AS, Shadden SC, Figueroa CA, Park JM, Tedesco MM, Herfkens RJ, Taylor CA, Dalman RL (2009) Quantification of hemodynamics in abdominal aortic aneurysms during rest and exercise using magnetic resonance imaging and computational fluid dynamic. Ann Biomed Eng (submitted)
16. Z Li C Kleinstreuer 2005 Blood flow and structure interactions in a stented abdominal aortic aneurysm model Med Eng Phys 27 5 369 382 10.1016/j.medengphy.2004.12.003 (Pubitemid 40603461)
17. F Migliavacca R Balossino G Pennati G Dubini TY Hsia MR de Leval EL Bove 2006 Multiscale modelling in biofluidynamics: application to reconstructive paediatric cardiac surgery J Biomech 39 6 1010 1020 10.1016/j.jbiomech.2005.02. 021
18. K Perktold R Peter M Resch 1989 Pulsatile non-newtonian blood flow simulation through a bifurcation with an aneurysm Biorheology 26 6 1011 1030
19. CS Peskin DM McQueen 1995 A general method for the computer simulation of biological systems interacting with fluids Symp Soc Exp Biol 49 265 276
20. A Quarteroni S Ragni A Veneziani 2001 Coupling between lumped and distributed models for blood flow problems Comp Vis Sci 4 2 111 124 10.1007/s007910100063 1946991
21. A Quarteroni M Tuveri A Veneziani 2000 Computational vascular fluid dynamics: problems, models and methods Comp Vis Sci 2 4 163 197 10.1007/s007910050039
22. Y Saad MH Schultz 1986 GMRES: a generalized minimal residual algorithm for solving nonsymmetric linear systems SIAM J Sci Stat Comput 7 856 869 10.1137/0907058 848568
23. O Sahni Y Müller KE Jansen MS Shephard CA Taylor 2006 Efficient anisotropic adaptive discretization of the cardiovascular system Comp Methods Appl Mech Eng 195 5634 5655 10.1016/j.cma.2005.10.018 (Pubitemid 43942195)
24. Sahni O, Zhou M, Shephard MS, Jansen KE (2009) Scalable implicit finite element solver for massively parallel processing with demonstration to 160k cores. In: Proceedings of IEEE/ACM SC'09, Finalist paper for the Gordon Bell Prize
25. Shephard MS, Jansen KE, Sahni O, Diachin LA (2007) Parallel adaptive simulations on unstructured meshes. J Phys Conf Ser 78. doi: 10.1088/1742-6596/78/1/012053
26. DD Soerensen K Pekkan D de Zelicourt S Sharma K Kanter M Fogel AP Yoganathan 2007 Introduction of a new optimized total cavopulmonary connection Ann Thorac Surg 83 6 2182 2190 10.1016/j.athoracsur.2006.12.079 (Pubitemid 46782645)
27. N Stergiopulos P Segers N Westerhof 1999 Use of pulse pressure method for estimating total arterial compliance in vivo Am J Physiol Heart Circ Physiol 276 2 H424 H428
28. GR Stuhne DA Steinman 2004 Finite-element modeling of the hemodynamics of stented aneurysms J Biomech Eng 126 3 382 387 10.1115/1.1762900 (Pubitemid 38944129)
29. BT Tang CP Cheng MT Draney NM Wilson PS Tsao RJ Herfkens CA Taylor 2006 Abdominal aortic hemodynamics in young healthy adults at rest and during lower limb exercise: quantification using image-based computer modeling Am J Physiol Heart Circ Physiol 291 2 H668 H676 10.1152/ajpheart.01301.2005 (Pubitemid 44175072)
30. CA Taylor TJR Hughes CK Zarins 1998 Finite element modeling of blood flow in arteries Comput Methods Appl Mech Eng 158 1-2 155 196 10.1016/S0045-7825(98) 80008-X 1626785 (Pubitemid 28424825)
31. CA Taylor MT Draney 2004 Experimental and computational methods in cardiovascular fluid mechanics Annu Rev Fluid Mech 36 197 231 10.1146/annurev.fluid.36.050802.121944 2062312
32. CA Taylor MT Draney JP Ku D Parker BN Steele K Wang CK Zarins 1999 Predictive medicine: computational techniques in therapeutic decision-making Comp Aided Surg 4 5 231 247 10.3109/10929089909148176
33. TE Tezduyar M Behr J Liou 1992 A new strategy for finite element computations involving moving boundaries and interfaces -The deforming-spatial-domain/space-time procedure: I. the concept and the preliminary numerical tests Comput Methods Appl Mech Eng 94 339 351 10.1016/0045-7825(92)90059-S 1153059
34. Vignon-Clementel IE, Figueroa CA, Jansen KE, Taylor CA (2008) Outflow boundary conditions for three-dimensional simulations of non-periodic blood flow and pressure fields in deformable arteries. Comput Meth Biomech Biomed Eng (submitted)
35. IE Vignon-Clementel CA Figueroa KE Jansen CA Taylor 2006 Outflow boundary conditions for three-dimensional finite element modeling of blood flow and pressure in arteries Comp Methods Appl Mech Eng 195 29-32 3776 3796 10.1016/j.cma.2005.04.014 2221774
36. CH Whiting KE Jansen 2001 A stabilized finite element method for the incompressible Navier-Stokes equations using a hierarchical basis Int J Numer Meth Fluids 35 93 116 10.1002/1097-0363(20010115)35:1<93::AID-FLD85>3.0. CO;2-G (Pubitemid 32175047)
37. J Womersley 1955 Method for the calculation of velocity, rate of flow and viscous drag in arteries when the pressure gradient is known J Physiol 127 553 563
38. M Zamir P Sinclair TH Wonnacott 1992 Relation between diameter and flow in major branches of the arch of the aorta J Biomech 25 11 1303 1310 10.1016/0021-9290(92)90285-9
39. Zhou M (2009) Petascale adaptive computational fluid dynamics. Ph.D. thesis, Rensselaer Polytechnic Institute