DNA methylation and histone acetylation: Genotypic variations in hybrid poplars, impact of water deficit and relationships with productivity

Annals of Forest Science

Volumn 67, Issue 2, 2010, Pages 208-208

  Gourcilleau, Delphine ^a   Bogeat Triboulot, Marie Béatrice ^b   Le Thiec, Didier ^b   Lafon Placette, Clément ^a,c   Delaunay, Alain ^a,c   El Soud, Walid Abu ^d   Brignolas, Franck ^a,c   Maury, Stéphane ^a,c  

^a UNIVERSITÉ D'ORLÉANS   (France)

^b LERFoB   (France)

^c CEMAGREF   (France)

^d INNSBRUCK MEDICAL UNIVERSITY   (Austria)

Author keywords

Methylcytosine; Productivity; Shoot apex; Vegetative development; Water deficit

Indexed keywords

ADAPTATION; BIOLOGICAL PRODUCTION; DECIDUOUS TREE; ENZYME ACTIVITY; GENETIC VARIATION; GENOTYPE; GROWTH RESPONSE; HYBRID; LEAF AREA; METHYLATION; MORPHOGENESIS; MORPHOLOGY; PROTEIN; WATER STRESS;

POPULUS; POPULUS DELTOIDES;

EID: 77951715191     PISSN: 12864560     EISSN: 1297966X     Source Type: Journal    
DOI: 10.1051/forest/2009101     Document Type: Article

References (32)

1. Allis C.D., Jenuwein T., Reinberg D., and Caparros M.-L., 2007. Epigenetics, Cold Spring Harbor Laboratory Press, New York, 502 p.
2. Bernacchia G., Primo A., Giorgetti L., Pitto L., and Cella R., 1998. Carrot DNA methyltransferase is encoded by two classes of genes with differing patterns of expression. Plant J. 13: 317-329.
3. Bogeat-Triboulot M.-B., Brosche M., Renaut J., Jouve L., Le Thiec D., Fayyaz P., Vinocur B.,Witters E., Laukens K., Teichmann T., Altman A., Hausman J.-F., Polle A., Kangasjärvi J., and Dreyer E., 2007. Gradual soil water depletion results in reversible changes of gene expression, protein profiles, ecophysiology, and growth performance in Populus euphratica, a poplar growing in arid regions. Plant Physiol. 143: 876-892.
4. Bonhomme L., Barbaroux C., Monclus R., Morabito D., Berthelot A., Villar M., Dreyer E., and Brignolas F., 2008. Genetic variation in productivity, leaf traits and carbon isotope discrimination in hybrid poplars cultivated on contrasting sites. Ann. For. Sci. 65: 503.
5. Bonhomme L., Monclus R., Vincent D., Carpin S., Lomenech A.-M., Plomion C., Brignolas F., and Morabito D., 2009. Leaf proteome analysis of eight Populus × euramericana genotypes: genetic variation in drought response and in water-use efficiency involves photosynthesis-related proteins. Proteomics 9: 4121-4142.
6. Boyko A. and Kovalchuk I., 2007. Epigenetic control of plant stress response. Environ. Mol. Mutagen. 49: 61-72.
7. Braatne J.H., Hinckley T.M., and Stettler R.F., 1992. Influence of soil water on the physiological and morphological components of plant water balance in Populus trichocarpa, Populus deltoides and their F1 hybrids. Tree Physiol. 11: 325-339.
8. Causevic A., 2005. Étude comparative de quelques paramètres du contrôle épigénétique en relation avec le développement de lignées de betterave sucrière. Thèse de doctorat. Faculté des Sciences, Université Orléans, France, 170 p.
9. Causevic A., Delaunay A., Ounnar S., Righezza M., Delmotte F.M., Brignolas F., Hagège D., and Maury S., 2005. DNA methylating and demethylating treatments modify phenotype and cell wall differentiation state in sugarbeet cell lines. Plant Physiol. Biochem. 43: 681- 691.
10. Causevic A., Gentil M.-V., Delaunay A., El Soud W.A., Garcia Z., Pannetier C., Brignolas F., Hagège D., and Maury S., 2006. Relationship between DNA methylation and histone acetylation levels, cell redox and cell differentiation states in sugarbeet. Planta 224: 812-827.
11. Chen Z.J. and Tian L., 2007. Roles of dynamic and reversible histone acetylation in plant development and polyploidy. Biochim. Biophys. Acta 1769: 295-307.
12. Gehring M. and Henikoff S., 2007. DNA methylation dynamics in plant genomes. Biochim. Biophys. Acta 1769: 276-286.
13. Gentil M.-V. and Maury S., 2007. Characterization of epigenetic biomarkers using new molecular approaches. In: Varshney R. and Tuberosa R. (Eds.), Genomics-Assisted Crop Improvement: Genomics Approaches and Platforms, Springer, Dordrecht, pp. 351- 377.
14. Kovarik A., Koukalovà B., Bezdìk M., and Opatrny Z., 1997. Hypermethylation of tobacco heterochromatic loci in response to osmotic stress. Theor. Appl. Genet. 95: 301-306.
15. Labra M., Ghiani A., Citterio S., Sgorbati S., Sala F., Vannini C., Ruffini-Castiglione M., and Bracale M., 2002. Analysis of cytosine methylation pattern in response to water deficit in pea root tips. Plant Biol. (Stuttg.) 4: 694-699.
16. Loidl P., 2004. A plant dialect of the histone language. Trends Plant Sci. 9: 84-90.
17. Marron N., Villar M., Dreyer E., Delay D., Boudouresque E., Petit J.M., Delmotte F.M., Guehl J., and Brignolas F., 2005. Diversity of leaf traits related to productivity in 31 Populus deltoides × Populus nigra clones. Tree Physiol. 25: 425-435. (Pubitemid 40466277)
18. Monclus R., Dreyer E., Villar M., Delmotte F.M., Delay D., Petit J.M., Barbaroux C., Le Thiec D., Bréchet C., and Brignolas F., 2006. Impact of drought on productivity and water use efficiency in 29 genotypes of Populus deltoides × Populus nigra. New Phytol. 169: 765-777.
19. Pavlopoulou A. and Kossida S., 2007. Plant cytosine-5 DNAmethyltransferases: structure, function, and molecular evolution. Genomics 90: 530-541.
20. Pipal A., Goralik-Schramel M., Lusser A., Lanzanova C., Sarg B., Loidl A., Lindner H., Rossi V., and Loidl P., 2003. Regulation and processing of maize histone deacetylase Hda1 by limited proteolysis. Plant Cell. 15: 1904-1917.
21. Plomion C., Lalanne C., Claverol S., Meddour H., Kohler A., Bogeat-Triboulot M.-B., Barre A., Le Provost G., Dumazet H., Jacob D., Bastien C., Dreyer E., de Daruvar A., Guehl J.-M., Schmitter J.-M., Martin F., and Bonneu M., 2006. Mapping the proteome of poplar and application to the discovery of drought-stress responsive proteins. Proteomics 6: 6509-6527.
22. Riddle N.C. and Richards E.J., 2002. The control of natural variation in cytosine methylation in Arabidopsis. Genetics 162: 355-363.
23. Roden J., van Volkenburgh E., and Hinckley T.M., 1990. Cellular basis for limitation of poplar leaf growth by water deficit. Tree Physiol. 6: 211-219.
24. Sabbah S., Raise M., and Tal M., 1995. Methylation of DNA in NaCladapted cells of potato. Plant Cell Rep. 14: 467-470.
25. Sridha S. andWu K. 2006. Identification of AtHD2C as a novel regulator of abscisic acid responses in Arabidopsis. Plant J. 46: 124-133.
26. Tschaplinski T.J., Tuskan G.A., and Gunderson C.A., 1994. Water-stress tolerance of black and eastern cottonwood clone and four hybrid progeny. I. Growth, water relations and gas exchange. Can. J. For. Res. 24: 364-371.
27. Tsuji H., Saika H., Tsutsumi N., Hirai A., and Nakazono M., 2006. Dynamic and reversible changes in histone H3-Lys4 methylation and H3 acetylation occurring at submergence-inducible genes in rice. Plant Cell Physiol. 47: 995-1003.
28. Tuskan G.A. et al., 2006. The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray). Science 313: 1596-1604.
29. Vaughn M.W., Tanurdzic M., Lippman Z., Jiang H., Carrasquillo R., Rabinowicz P.D., Dedhia N., McCombie W.R., Agier N., Bulski A., Colot V., Doerge R.W., and Martienssen R.A., 2007. Epigenetic natural variation in Arabidopsis thaliana. PLoS Biology 5: e174.
30. Zhang X., Yazaki J., Sundaresan A., Cokus S., Chan S.W.-L., Chen H., Henderson I.R., Shinn P., Pellegrini M., Jacobsen S.E., and Ecker J.R., 2006. Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis. Cell 126: 1189-1201.
31. Zhang X., Shiu S., Cal A., and Borevitz J.O., 2008. Global analysis of genetic, epigenetic and transcriptional polymorphisms in Arabidopsis thaliana using whole genome tiling arrays. PLoS Genetics 4: e1000032. Doi:10.1371/journal.pgen.1000032. (Pubitemid 351507869)
32. Zilberman D., Gehring M., Tran R.K., Ballinger T., and Henikoff S., 2007. Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nature Genetics 39: 61-69.