Characterization of surfaces presenting covalently immobilized oligopeptides using near-edge X-ray absorption fine structure spectroscopy

Langmuir

Volumn 26, Issue 9, 2010, Pages 6464-6470

  Bai, Yiqun ^a   Liu, Xiaosong ^a   Cook, Peter ^a   Abbott, Nicholas L ^a   Himpsel, F J ^a  

^a University of Wisconsin Madison   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

[CARBONYL; BIOLOGICAL ASSAYS; CANCER THERAPEUTICS; CARBON ATOMS; CHARACTERIZATION METHODS; CHEMICAL CHARACTERIZATION; COVALENT ATTACHMENT; EPIDERMAL GROWTH FACTOR RECEPTORS; IMMOBILIZATION CHEMISTRY; KINASE SUBSTRATES; NEAR EDGE X-RAY ABSORPTION FINE STRUCTURE SPECTROSCOPIES; OLIGOPEPTIDES; ORBITALS; SEQUENTIAL REACTION; STRUCTURAL CONFIGURATIONS; SUBMONOLAYER;

ABSORPTION; AMIDES; BIOMOLECULES; CHEMICAL ELEMENTS; PEPTIDES; SURFACE CHEMISTRY; X RAY ABSORPTION; X RAY ABSORPTION FINE STRUCTURE SPECTROSCOPY;

ABSORPTION SPECTROSCOPY;

IMMOBILIZED PROTEIN; OLIGOPEPTIDE;

AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; PHOTON; SURFACE PROPERTY; X RAY ABSORPTION SPECTROSCOPY;

AMINO ACID SEQUENCE; IMMOBILIZED PROTEINS; OLIGOPEPTIDES; PHOTONS; SURFACE PROPERTIES; X-RAY ABSORPTION SPECTROSCOPY;

EID: 77951697804     PISSN: 07437463     EISSN: 15205827     Source Type: Journal    
DOI: 10.1021/la101101a     Document Type: Article

References (33)

1. Xiaosong Liu, F. Z., Jurgensen, A., Perez-Dieste, V., Petrovykh, D. Y., Abbott, N. L., and Himpsel, F. J. Self-assembly of biomolecules at surfaces characterized by NEXAFS. Can. J. Chem. 2007, 85, 793-800.
2. Petrovykh, D. Y., P.-D., V., Opdahl, A., Kimura-Suda, H., Sullivan, J. M., Tarlov, M. J., Himpsel, F. J., and Whitman, L. J. Nucleobase Orientation and Ordering in Films of Single-Stranded DNA on Gold. J. Am. Chem. Soc. 2006, 128, 2-3.
3. Parvez, I. and Haris, D. C. The conformational analysis of peptides using fourier transform IR spectroscopy. Biopolymers 1995, 37 (4), 251-263.
4. Braiman, M. S. and Rothschild, K. J. Fourier Transform Infrared Techniques for Probing Membrane Protein Structure. Annu. Rev. Biophys. Biophys. Chem. 1988, 17 (1), 541-570.
5. Nuretin Demirdven, C. M. C., Chung, H. S., Khalil, M., Knoester, J., and Tokmakoff, A. Two-Dimensional Infrared Spectroscopy of Antiparallel β-Sheet Secondary Structure. J. Am. Chem. Soc. 2009, 126 (25), 7981-7990.
6. Marie-Pierre Gaigeot, M. M. and Vuilleumier, R. Infrared Spectroscopy in the gas and liquid phase from first principle molecular dynamics simulations: application to small peptides. Mol. Phys. 2007, 105, 2857-2878.
7. Ozzy Mermut, D. C. P., York, R. L., McCrea, K. R., Ward, R. S., and Somorjai, G. A. In Situ Adsorption Studies of a 14-Amino Acid Leucine-Lysine Peptide onto Hydrophobic Polystyrene and Hydrophilic Silica Surfaces Using Quartz Crystal Microbalance, Atomic Force Microscopy, and Sum Frequency Generation Vibrational Spectroscopy. J. Am. Chem. Soc. 2006, 128, 3598-3607.
8. Buck, M. and H., M. Vibrational Spectroscopy of interfaces by infrared-visible sum frequency generation. J. Vac. Sci. Technol. A 2001, 19 (6), 2717-2735.
9. Stohr, J. NEXAFS Spectroscopy; Springer: Berlin, 1992.
10. Hahner, G. Near edge X-ray absorption fine structure spectroscopy as a tool to probe electronic and structural properties of thin organic films and liquids. Chem. Soc. Rev. 2006, 35, 1244-1255.
11. Crain, J. N., K., A., Lin, J.-L., Yuedong, G., Shah, R. R., Abbott, N. L., and Himpsel, F. J. Functionalization of silicon step arrays II: Molecular orientation of alkanes and DNA. J. Appl. Phys. 2001, 90 (7), 3291-3295.
12. Yan-Yeung, L., Nicholas, L. A., Crain, J. N., and Himpsel, F. J. Dipole-induced structure in aromatic-terminated self-assembled monolayers - -A study by near edge x-ray absorption fine structure spectroscopy. J. Chem. Phys. 2004, 120 (22), 10792-10798.
13. Yan Zubavichus, A. S., Korolkov, V., Grunze, M., and Zharnikov, M. X-ray Absorption Spectroscopy of the Nucleotide Bases at the Carbon, Nitrogen, and Oxygen K-Edges. J. Phys. Chem. B 2008, 112 (44), 13711-13716.
14. 2 and Au studied by NEXAFS, XPS, and IR spectroscopies. Mater. Sci. Eng. C 2006, 26, 929-934.
15. 2 and Au: Molecular organization investigated by NEXAFS, XPS, and IR. Surf. Sci. 2007, 601, 3843-3849.
16. Stewart-Ornstein, J., Hitchcock, A. P., Hernandez Cruz, D., Henklein, P., Overhage, J., Hilpert, K., Hale, J. D., and Hancock, R. E. W. Using Intrinsic X-ray Absorption Spectral Differences To Identify and Map Peptides and Proteins. J. Phys. Chem. B 2007, 111 (26), 7691-7699.
17. Vitaliy Feyer, O. P., Richter, R., Coreno, M., Prince, K. C., and Carravetta, V. Core Level Study of Alanine and Threonine. J. Phys. Chem. A 2008, 112 (34), 7806-7815.
18. Xiaosong Liu, C.-H. J., Zheng, F., Jurgensen, A., Denlinger, J. D., Dickson, K. A., Raines, R. T., Abbott, N. L., and Himpsel, F. J. Characterization of Protein Immobilization at Silver Surfaces by Near Edge X-ray Absorption Fine Structure Spectroscopy. Langmuir 2006, 22, 7719-7725. (Pubitemid 44376335)
19. Yan Zubavichus, A. S., Grunze, M., and Zharnikov, M. Innershell Absorption Spectroscopy of Amino Acids at all Relevant Absorption Edges J. Phys. Chem. A 2005, 109 (32), 6998-7000.
20. 2: the influence of the side chains. Surf. Interface Anal. 2008, 40 (3-4), 210-214.
21. Samuel, N. T., L., C.-Y., Gamble, L. J., Fischer, D. A., and Castner, D. G. NEXAFS characterization of DNA components and molecular-orientation of surface-bound DNA oligomers. J. Electron Spectrosc. 2006.
22. Martin Schmidt, S. G. S. XPS Studies of amino acids adsorbed on titanium dioxide surfaces. Fresenius J. Anal. Chem. 1991, 341, 412-415.
23. Chi-Ying Lee, P.-C. T. N., Grainger, D. W., Gamble, L. J., and Castner, D. G. Structure and DNA Hybridization Properties of Mixed Nucleic Acid/ Maleimide-ethylene glycol Monolayers. Anal. Chem. 2007, 79 (12), 4390-4400.
24. Clare, B. H. and A., N. L. Orientations of Nematic Liquid Crystals on Surfaces Presenting Controlled Densities of Peptides: Amplification of Protein-Peptide Binding Events. Langmuir 2005, 21, 6451-6461.
25. Govindaraju, T., Bertics, P. J., Raines, R. T., and Abbott, N. L. Using Measurements of Anchoring Energies of Liquid Crystals on Surfaces To Quantify Proteins Captured by Immobilized Ligands. J. Am. Chem. Soc. 2007, 129 (36), 11223-11231.
26. William Pao, V. M., Zakowski, M., Doherty, J., Politi, K., Sarkaria, I., Singh, B., Heelan, R., Rusch, V., Fulton, L., Mardis, E., Kupfer, D., Wilson, R., Kris, M., and Varmus, H. EGF receptor gene mutations are common in lung cancers from "never smokers" and are associated with sensitivity of tumors to gefitinib and erlotinib. Proc. Natl. Acad. Sci. U.S.A. 2004, 101 (36), 13306-13311.
27. Baselga, J. Why the Epidermal Growth Factor Receptor? The Rationale for Cancer Therapy. Oncologist 2002, 7 (Suppl. 4), 2-8.
28. Houseman, B. T., H., J. H., Kron, S. J., and Mrksich, M. Peptide chips for the quantitative evaluation of protein kinase activity. Nat. Biotechnol. 2002, 20, 270-274.
29. Takeshi Mori, K. I., Inoue, Y., Han, X., Yamanouchi, G., Niidome, T., and Katayama, Y. Evaluation of protein kinase activities of cell lysates using peptide microarrays based on surface plasmon resonance imaging. Anal. Biochem. 2008, 375, 223-231.
30. Skaife, J. J. and A., N. L. Substrates of Gold by Atomic Force Microscopy: Influence of Substrate Topography on Anchoring of Liquid Crystals. Chem. Mater. 1999, 11 (3), 612-623.
31. http://www.piercenet.com/files/0581dh5.pdf.
32. Nirmalya Ballav, A. T. and Zharnikov, M. Mixing of Nonsubstituted and Partly Fluorinated Alkanethiols in a Binary Self-Assembled Monolayer. J. Phys. Chem. C 2009, 113, 3697-3706.
33. Tobias Weidner, N. B., Siemeling, U., Troegel, D., Walter, T., Tacke, R., Castner, D. G., and Zharnikov, M. Tripodal Binding Units for Self-Assembled Monolayers on Gold: A Comparison of Thiol and Thioether Headgroups. J. Phys. Chem. C 2009, 113, 19609-19617.