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Volumn 40, Issue 4, 2010, Pages 836-841

A molecular approach to quantify root community composition in a northern hardwood forest - testing effects of root species, relative abundance, and diameter

Author keywords

[No Author keywords available]

Indexed keywords

COMMUNITY COMPOSITION; COMMUNITY STRUCTURES; MIXED SAMPLES; MOLECULAR APPROACH; NORTHERN HARDWOOD FOREST; PLANT SPECIES; RECOVERY EFFICIENCY; RELATIVE ABUNDANCE; ROOT DIAMETERS; YELLOW BIRCH;

EID: 77951689578     PISSN: 00455067     EISSN: None     Source Type: Journal    
DOI: 10.1139/X10-022     Document Type: Article
Times cited : (14)

References (21)
  • 1
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSL-BLAST: A new generation of protein database search programs
    • doi:10.1093/nar/ 25.17.3389
    • Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J.H., Zhang, Z., Miller, W., and Lipman, D.J. 1997. Gapped BLAST and PSL-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25(17): 3389-3402. doi:10.1093/nar/ 25.17.3389.
    • (1997) Nucleic Acids Res. , vol.25 , Issue.17 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.H.4    Zhang, Z.5    Miller, W.6    Lipman, D.J.7
  • 2
    • 0036239296 scopus 로고    scopus 로고
    • Are competitive interactions influenced by spatial nutrient heterogeneity and root foraging behavior?
    • doi:10.1046/j.1469-8137.2002.00389.x
    • Bliss, K.M., Jones, R.H., Mitchell, R.J., and Mou, P.P. 2002. Are competitive interactions influenced by spatial nutrient heterogeneity and root foraging behavior? New Phytol. 154(2): 409-417. doi:10.1046/j.1469-8137.2002.00389.x.
    • (2002) New Phytol. , vol.154 , Issue.2 , pp. 409-417
    • Bliss, K.M.1    Jones, R.H.2    Mitchell, R.J.3    Mou, P.P.4
  • 3
    • 0032950782 scopus 로고    scopus 로고
    • Identification of roots of woody species using polymerase chain reaction (PCR) and restriction fragment length polymorphism (RFLP) analysis
    • doi:10.1046/j.1365-294X.1999.00603.x. PMID:10199009
    • Bobowski, B.R., Hole, D., Wolf, P.G., and Bryant, L. 1999. Identification of roots of woody species using polymerase chain reaction (PCR) and restriction fragment length polymorphism (RFLP) analysis. Mol. Ecol. 8(3): 485-491. doi:10.1046/j.1365-294X.1999.00603.x. PMID:10199009.
    • (1999) Mol. Ecol. , vol.8 , Issue.3 , pp. 485-491
    • Bobowski, B.R.1    Hole, D.2    Wolf, P.G.3    Bryant, L.4
  • 4
    • 0034869634 scopus 로고    scopus 로고
    • Molecular identification of fine roots of trees from the Alps: Reliable and fast DNA extraction and PCR-RFLP analyses of plastid DNA
    • doi:10.1046/j.1365-294X.2001.01325.x. PMID:11555251
    • Brunner, I., Brodbeck, S., Buchler, U., and Sperisen, C. 2001. Molecular identification of fine roots of trees from the Alps: reliable and fast DNA extraction and PCR-RFLP analyses of plastid DNA. Mol. Ecol. 10(8): 2079-2087. doi:10.1046/j.1365-294X.2001.01325.x. PMID:11555251.
    • (2001) Mol. Ecol. , vol.10 , Issue.8 , pp. 2079-2087
    • Brunner, I.1    Brodbeck, S.2    Buchler, U.3    Sperisen, C.4
  • 5
    • 0028161470 scopus 로고
    • Fine root dynamics in a northern hardwood forest ecosystem, Hubbard Brook Experimental Forest, NH
    • doi:10.2307/2261262
    • Fahey, T.J., and Hughes, J.W. 1994. Fine root dynamics in a northern hardwood forest ecosystem, Hubbard Brook Experimental Forest, NH. J. Ecol. 82(3): 533-548. doi:10.2307/2261262.
    • (1994) J. Ecol. , vol.82 , Issue.3 , pp. 533-548
    • Fahey, T.J.1    Hughes, J.W.2
  • 6
    • 4344561901 scopus 로고    scopus 로고
    • Fine root branch order responds differentially to carbon source-sink ma-nipulations in a longleaf pine forest
    • doi:10.1007/s00442-004-1596-1
    • Guo, D.L., Mitchell, R.J., and Hendricks, J.J. 2004. Fine root branch order responds differentially to carbon source-sink ma-nipulations in a longleaf pine forest. Oecologia (Berl.), 140(3): 450-457. doi:10.1007/s00442-004-1596-1.
    • (2004) Oecologia (Berl.). , vol.140 , Issue.3 , pp. 450-457
    • Guo, D.L.1    Mitchell, R.J.2    Hendricks, J.J.3
  • 7
    • 44949181087 scopus 로고    scopus 로고
    • Endogenous and exogenous controls of root life span, mortality and nitrogen flux in a longleaf pine forest: Root branch order predominates
    • doi:10.1111/j.1365-2745.2008.01385.x
    • Guo, D., Mitchell, R.J., Withington, J.M., Fan, P.-P., and Hendricks, J.J. 2008. Endogenous and exogenous controls of root life span, mortality and nitrogen flux in a longleaf pine forest: root branch order predominates. J. Ecol. 96(4): 737-745. doi:10.1111/j.1365-2745.2008.01385.x.
    • (2008) J. Ecol. , vol.96 , Issue.4 , pp. 737-745
    • Guo, D.1    Mitchell, R.J.2    Withington, J.M.3    Fan, P.-P.4    Hendricks, J.J.5
  • 8
    • 65349091290 scopus 로고    scopus 로고
    • Effect of PCR amplicon size on assessments of clone library microbial diversity and community structure
    • doi:10.1111/j. 1462-2920.2008.01857.x. PMID:19220394
    • Huber, J.A., Morrison, H.G., Huse, S.M., Neal, P.R., Sogin, M.L., and Mark Welch, D.B. 2009. Effect of PCR amplicon size on assessments of clone library microbial diversity and community structure. Environ. Microbiol. 11(5): 1292-1302. doi:10.1111/j. 1462-2920.2008.01857.x. PMID:19220394.
    • (2009) Environ. Microbiol. , vol.11 , Issue.5 , pp. 1292-1302
    • Huber, J.A.1    Morrison, H.G.2    Huse, S.M.3    Neal, P.R.4    Sogin, M.L.5    Mark Welch, D.B.6
  • 9
    • 57649129082 scopus 로고    scopus 로고
    • Shoot, but not root, competition reduces community diversity in experimental mesocosms
    • doi:10.1111/j.13652745.2008.01454.x
    • Lamb, E.G., Kembel, S.W., and Cahill, J.F., Jr. 2009. Shoot, but not root, competition reduces community diversity in experimental mesocosms. J. Ecol. 97(1): 155-163. doi:10.1111/j.13652745.2008.01454.x.
    • (2009) J. Ecol. , vol.97 , Issue.1 , pp. 155-163
    • Lamb, E.G.1    Kembel, S.W.2    Cahill Jr., J.F.3
  • 10
    • 67651247607 scopus 로고    scopus 로고
    • Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale
    • doi:10.1128/AEM.00335-09. PMID:19502440
    • Lauber, C.L., Hamady, M., Knight, R., and Fierer, N. 2009. Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Appl. Environ. Microbiol. 75(15): 5111-5120. doi:10.1128/AEM.00335-09. PMID:19502440.
    • (2009) Appl. Environ. Microbiol. , vol.75 , Issue.15 , pp. 5111-5120
    • Lauber, C.L.1    Hamady, M.2    Knight, R.3    Fierer, N.4
  • 12
    • 0033669276 scopus 로고    scopus 로고
    • A universal molecular method for identifying underground plant parts to species
    • doi:10.1046/j.1365-294x. 2000.01034.x. PMID:11050550
    • Linder, C.R., Moore, L.A., and Jackson, R.B. 2000. A universal molecular method for identifying underground plant parts to species. Mol. Ecol. 9(10): 1549-1559. doi:10.1046/j.1365-294x. 2000.01034.x. PMID:11050550.
    • (2000) Mol. Ecol. , vol.9 , Issue.10 , pp. 1549-1559
    • Linder, C.R.1    Moore, L.A.2    Jackson, R.B.3
  • 13
    • 67649372859 scopus 로고    scopus 로고
    • Biomass and morphology of fine roots in temperate broad-leaved forests differing in tree species diversity: Is there evidence of belowground overyielding?
    • doi:10.1007/s00442-009-1352-7
    • Meinen, C., Hertel, D., and Leuschner, C. 2009. Biomass and morphology of fine roots in temperate broad-leaved forests differing in tree species diversity: Is there evidence of belowground overyielding? Oecologia (Berl.), 161(1): 99-111. doi:10.1007/s00442-009-1352-7.
    • (2009) Oecologia (Berl.). , vol.161 , Issue.1 , pp. 99-111
    • Meinen, C.1    Hertel, D.2    Leuschner, C.3
  • 14
    • 44849131145 scopus 로고    scopus 로고
    • Unravelling belowground plant distributions: A real-time polymerase-chain reaction method for quantifying species proportions in mixed root samples
    • doi:10.1111/j.1755-0998.2008.02130.x
    • Mommer, L., Wagemaker, C.A.M., deKroon, H., and Ouborg, N.J. 2008. Unravelling belowground plant distributions: a real-time polymerase-chain reaction method for quantifying species proportions in mixed root samples. Mol. Ecol. Res. 8(5): 947-953. doi:10.1111/j.1755-0998.2008.02130.x.
    • (2008) Mol. Ecol. Res. , vol.8 , Issue.5 , pp. 947-953
    • Mommer, L.1    Wagemaker, C.A.M.2    Dekroon, H.3    Ouborg, N.J.4
  • 15
    • 0031711754 scopus 로고    scopus 로고
    • Bias in template-to-product ratios in multitemplate PCR
    • PMID:9758791
    • Polz, M.F., and Cavanaugh, C.M. 1998. Bias in template-to-product ratios in multitemplate PCR. Appl. Environ. Microbiol. 64(10): 3724-3730. PMID:9758791.
    • (1998) Appl. Environ. Microbiol. , vol.64 , Issue.10 , pp. 3724-3730
    • Polz, M.F.1    Cavanaugh, C.M.2
  • 16
    • 0036591026 scopus 로고    scopus 로고
    • Fine root architecture of nine North American trees
    • doi:10. 1890/0012-9615(2002)072[0293:FRAONN]2.0.CO;2
    • Pregitzer, K.S., Deforest, J.L., Burton, A.J., Allen, M.F., Ruess, R.W., and Hendrick, R.L. 2002. Fine root architecture of nine North American trees. Ecol. Monogr. 72(2): 293-309. doi:10. 1890/0012-9615(2002)072[0293:FRAONN]2.0.CO;2.
    • (2002) Ecol. Monogr. , vol.72 , Issue.2 , pp. 293-309
    • Pregitzer, K.S.1    Deforest, J.L.2    Burton, A.J.3    Allen, M.F.4    Ruess, R.W.5    Hendrick, R.L.6
  • 17
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    • PMID: 8593063
    • Suzuki, M.T., and Giovannoni, S.J. 1996. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol. 62(2): 625-630. PMID: 8593063.
    • (1996) Appl. Environ. Microbiol. , vol.62 , Issue.2 , pp. 625-630
    • Suzuki, M.T.1    Giovannoni, S.J.2
  • 18
    • 0026261665 scopus 로고
    • Universal primers for amplification of three non-coding regions of chloroplast DNA
    • doi:10.1007/BF00037152. PMID:1932684
    • Taberlet, P., Gielly, L., Pautou, G., and Bouvet, J. 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Mol. Biol. 17(5): 1105-1109. doi:10.1007/BF00037152. PMID:1932684.
    • (1991) Plant Mol. Biol. , vol.17 , Issue.5 , pp. 1105-1109
    • Taberlet, P.1    Gielly, L.2    Pautou, G.3    Bouvet, J.4
  • 19
    • 34247892392 scopus 로고    scopus 로고
    • TOPO TA is A-OK: A test of phylogenetic bias in fungal environmental clone library construction
    • doi:10.1111/j.1462-2920.2007.01253.x. PMID:17472644
    • Taylor, D.L., Herriott, I.C., Long, J., and O'Neill, K. 2007. TOPO TA is A-OK: a test of phylogenetic bias in fungal environmental clone library construction. Environ. Microbiol. 9(5): 1329-1334. doi:10.1111/j.1462-2920.2007.01253.x. PMID:17472644.
    • (2007) Environ. Microbiol. , vol.9 , Issue.5 , pp. 1329-1334
    • Taylor, D.L.1    Herriott, I.C.2    Long, J.3    O'Neill, K.4
  • 20
    • 0345195995 scopus 로고    scopus 로고
    • Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis
    • doi:10.1111/j.1574-6976.1997.tb00351.x. PMID:9451814
    • von Wintzingerode, F., Gobel, U.B., and Stackebrandt, E. 1997. Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol. Rev. 21(3): 213-229. doi:10.1111/j.1574-6976.1997.tb00351.x. PMID:9451814.
    • (1997) FEMS Microbiol. Rev. , vol.21 , Issue.3 , pp. 213-229
    • von Wintzingerode, F.1    Gobel, U.B.2    Stackebrandt, E.3
  • 21
    • 55549131940 scopus 로고    scopus 로고
    • Identifying roots of northern hardwood species: Patterns with diameter and depth
    • doi:10.1139/X08-125
    • Yanai, R.D., Fisk, M.C., Fahey, T.J., Cleavitt, N., and Park, B.B. 2008. Identifying roots of northern hardwood species: patterns with diameter and depth. Can. J. For. Res. 38(11): 2862-2869. doi:10.1139/X08-125.
    • (2008) Can. J. For. Res. , vol.38 , Issue.11 , pp. 2862-2869
    • Yanai, R.D.1    Fisk, M.C.2    Fahey, T.J.3    Cleavitt, N.4    Park, B.B.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.