Comparative evaluation of automated ribotyping and RAPD-PCR for typing of Lactobacillus spp. occurring in dental caries

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 98, Issue 1, 2010, Pages 85-92

  Švec, Pavel ^a   Kukletová, Martina ^a   Sedláček, Ivo ^a  

^a MASARYK UNIVERSITY   (Czech Republic)

Author keywords

Dental caries; Lactobacillus; Randomly amplified polymorphic DNA (RAPD PCR); RiboPrinter; Ribotyping

Indexed keywords

ARTICLE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; COMPARATIVE STUDY; CONTROLLED STUDY; DENTAL CARIES; DNA FINGERPRINTING; GENETIC VARIABILITY; LABORATORY AUTOMATION; LACTOBACILLUS CASEI; LACTOBACILLUS FERMENTUM; LACTOBACILLUS GASSERI; LACTOBACILLUS PLANTARUM; LACTOBACILLUS RHAMNOSUS; LACTOBACILLUS SALIVARIUS; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RANDOM AMPLIFIED POLYMORPHIC DNA; RIBOTYPING;

AUTOMATION; BACTERIAL TYPING TECHNIQUES; CLUSTER ANALYSIS; DENTAL CARIES; GENOTYPE; HUMANS; LACTOBACILLUS; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; RIBOTYPING;

LACTOBACILLUS; LACTOBACILLUS FERMENTUM; LACTOBACILLUS GASSERI; LACTOBACILLUS PLANTARUM; LACTOBACILLUS RHAMNOSUS; LACTOBACILLUS SALIVARIUS;

EID: 77951666025     PISSN: 00036072     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10482-010-9432-6     Document Type: Article

References (28)

1. JA Aas BJ Paster LN Stokes I Olsen FE Dewhirst 2005 Defining the normal bacterial flora of the oral cavity J Clin Microbiol 43 5721 5732 10.1128/JCM.43.11.5721-5732.2005 16272510 (Pubitemid 41612354)
2. C Andrighetto L Zampese A Lombardi 2001 RAPD-PCR characterization of lactobacilli isolated from artisanal meat plants and traditional fermented sausages of Veneto region (Italy) Lett Appl Microbiol 33 26 30 10.1046/j.1472-765X.2001.00939.x 1:CAS:528:DC%2BD3MXlslWntbY%3D 11442810 (Pubitemid 32625728)
3. K Ben Amor EE Vaughan WM de Vos 2007 Advanced molecular tools for the identification of lactic acid bacteria J Nutr 137 741S 747S 1:CAS:528: DC%2BD2sXisVygsbs%3D 17311970 (Pubitemid 46397513)
4. EH Bingen E Denamur J Elion 1994 Use of ribotyping in epidemiologic surveillance of nosocomial outbreaks Clin Microbiol Rev 7 311 327 1:STN:280:DyaK2M%2FgslCgug%3D%3D 7923052 (Pubitemid 24216124)
5. V Bouchet H Huot R Goldstein 2008 Molecular genetic basis of ribotyping Clin Microbiol Rev 21 262 273 10.1128/CMR.00026-07 1:CAS:528: DC%2BD1cXmtFKlsr0%3D 18400796 (Pubitemid 351555507)
6. S Brisse V Fussing B Ridwan J Verhoef RJL Willems 2002 Automated ribotyping of vancomycin-resistant Enterococcus faecium isolates J Clin Microbiol 40 1977 1984 10.1128/JCM.40.6.1977-1984.2002 1:CAS:528: DC%2BD38XltFOntr0%3D 12037051 (Pubitemid 34596371)
7. G Caetano-Anolles 1993 Amplifying DNA with arbitrary oligonucleotide primers PCR Methods Appl 3 85 94 1:CAS:528:DyaK2cXht1Khsrk%3D 8268791 (Pubitemid 2005346)
8. F Dellaglio LMT Dicks M Dutoit S Torriani 1991 Designation of ATCC 334 in place of ATCC 393 (NCDO 161) as the neotype strain of Lactobacillus casei subsp. casei and rejection of the name Lactobacillus paracasei Int J Syst Bacteriol 41 340 342 10.1099/00207713-41-2-340
9. F Dellaglio GE Felis S Torriani, et al. 2002 The status of the species Lactobacillus casei (Orla-Jensen 1916) Hansen and Lessel 1971 and Lactobacillus paracasei Collins et al. 1989. Request for an opinion Int J Syst Evol Microbiol 52 285 287 11837314 (Pubitemid 34105718)
10. LMT Dicks EM Du Plessis F Dellaglio E Lauer 1996 Reclassification of Lactobacillus casei subsp. casei ATCC 393 and Lactobacillus rhamnosus ATCC 15820 as Lactobacillus zeae nom. rev., designation of ATCC 334 as the neotype of L. casei subsp. casei, and rejection of the Lactobacillus paracasei Int J Syst Bacteriol 46 337 340 10.1099/00207713-46-1-337 1:STN:280:DyaK287jvV2qtQ%3D%3D 8573516 (Pubitemid 126735771)
11. M Gatti C Lazzi L Rossetti G Mucchetti E Neviani 2003 Biodiversity in Lactobacillus helveticus strains present in natural whey starter used for Parmigiano Reggiano cheese J Appl Microbiol 95 463 470 10.1046/j.1365-2672.2003. 01997.x 1:CAS:528:DC%2BD3sXns1Shtrg%3D 12911693 (Pubitemid 37041077)
12. V Gürtler BC Mayall 2001 Genomic approaches to typing, taxonomy and evolution of bacterial isolates Int J Syst Evol Microbiol 51 3 16 11211268 (Pubitemid 32118404)
13. Hammes WP, Vogel RF (1995) The genus Lactobacillus. In: Wood BJB, Holzapfel W (eds) The genera of lactic acid bacteria, vol 2. Chapman & Hall, Glasgow, pp 19-54
14. Hammes WP, Weiss N, Holzapfel W (1992) The genera Lactobacillus and Carnobacterium. In: Balows A, Trüpper HG, Dworkin M, Harder W, Schleifer KH (eds) The Prokaryotes: a handbook on the biology of bacteria: ecophysiology, isolation, identification, applications, vol 2. Springer-Verlag, New York, pp 1535-1594
15. G Klein 2007 International Committee on Systematics of Prokaryotes; Subcommittee on the taxonomy of Bifidobacterium, Lactobacillus and related organisms: Minutes of the meetings, 30 August and 1 September 2006, Bologna, Italy Int J Syst Evol Microbiol 57 1367 1369 10.1099/ijs.0.65143-0
16. Marsh P, Martin VM (eds) (1999) The resident oral microflora. In: Oral microbiology, 4th edn. Wright, Oxford, pp 17-33
17. M Massi B Vitali F Federici D Matteuzzi P Brigidi 2004 Identification method based on PCR combined with automated ribotyping for tracking probiotic Lactobacillus strains colonizing the human gut and vagina J Appl Microbiol 96 777 786 10.1111/j.1365-2672.2004.02228.x 1:CAS:528:DC%2BD2cXjs1Wju7c%3D 15012816 (Pubitemid 38437837)
18. DM Olive P Bean 1999 Principles and applications of methods for DNA-based typing of microbial organisms J Clin Microbiol 37 1661 1669 1:CAS:528:DyaK1MXjslSrt70%3D 10325304 (Pubitemid 29235203)
19. K Rantsiou EH Drosinos M Gialitaki I Metaxopoulos G Comi L Cocolin 2006 Use of molecular tools to characterize Lactobacillus spp. isolated from Greek traditional fermented sausages Int J Food Microbiol 112 215 222 10.1016/j.ijfoodmicro.2006.09.001 1:CAS:528:DC%2BD28Xht1Sht7fE 17045690 (Pubitemid 44708387)
20. Romesburg HC (ed) (1984) Overview of cluster analysis. In: Cluster analysis for researchers. Lifetime Learning Publications, Belmont, pp 7-73
21. L Rossetti G Giraffa 2005 Rapid identification of dairy lactic acid bacteria by M13-generated, RAPD-PCR fingerprint databases J Microbiol Methods 63 135 144 10.1016/j.mimet.2005.03.001 1:CAS:528:DC%2BD2MXhtFWhsLjM 15893395 (Pubitemid 41443322)
22. CS Ryu JW Czajka M Sakamoto Y Benno 2001 Characterization of the Lactobacillus casei group and the Lactobacillus acidophilus group by automated ribotyping Microbiol Immunol 45 271 275 1:CAS:528:DC%2BD3MXjvVSitLc%3D 11386416 (Pubitemid 32367615)
23. P Švec I Sedláček 2008 Characterization of Lactococcus lactis subsp. lactis isolated from surface waters Folia Microbiol 53 53 56 10.1007/s12223-008-0007-0 (Pubitemid 351690785)
24. P Švec V Dráb I Sedláček 2005 Ribotyping of Lactobacillus casei group strains isolated from dairy products Folia Microbiol 50 223 228 10.1007/BF02931570 (Pubitemid 41503620)
25. P Švec I Sedláček L Žáč ková D Nováková M Kukletová 2009 Lactobacillus spp. associated with early childhood caries Folia Microbiol 54 53 58 10.1007/s12223-009-0008-7
26. S Torriani G Zapparoli F Dellaglio 1999 Use of PCR-based methods for rapid differentiation of Lactobacillus delbrueckii subsp. bulgaricus and L. delbrueckii subsp. lactis Appl Environ Microbiol 65 4351 4356 1:CAS:528:DyaK1MXms1Ois7s%3D 10508059 (Pubitemid 129519943)
27. S Tynkkynen R Satokari M Saarela T Mattila-Sandholm M Saxelin 1999 Comparison of ribotyping, randomly amplified polymorphic DNA analysis, and pulsed-field gel electrophoresis in typing of Lactobacillus rhamnosus and L. casei strains Appl Environ Microbiol 65 3908 3914 1:CAS:528:DyaK1MXlvFeqtLo%3D 10473394 (Pubitemid 129519844)
28. J van Houte 1994 Role of micro-organisms in caries etiology J Dent Res 73 672 681 8163737