메뉴 건너뛰기




Volumn 97, Issue 4, 2010, Pages 419-431

Novel green sulfur bacteria phylotypes detected in saline environments: Ecophysiological characters versus phylogenetic taxonomy

Author keywords

Green sulfur bacteria; Halophile; Phylogeny; Salt tolerance; Taxonomy

Indexed keywords

RNA 16S;

EID: 77951665490     PISSN: 00036072     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10482-010-9420-x     Document Type: Article
Times cited : (3)

References (43)
  • 1
    • 0035403872 scopus 로고    scopus 로고
    • Photosynthetic and Phylogenetic Primers for Detection of Anoxygenic Phototrophs in Natural Environments
    • DOI 10.1128/AEM.67.7.2922-2926.2001
    • LA Achenbach J Carey MT Madigan 2001 Photosynthetic and phylogenetic primers for detection of anoxygenic phototrophs in natural environments Appl Environ Microbiol 67 2922 2926 10.1128/AEM.67.7.2922-2926.2001 1:CAS:528:DC%2BD3MXkvFSntL8%3D 11425703 (Pubitemid 33644754)
    • (2001) Applied and Environmental Microbiology , vol.67 , Issue.7 , pp. 2922-2926
    • Achenbach, L.A.1    Carey, J.2    Madigan, M.T.3
  • 2
    • 33846487989 scopus 로고    scopus 로고
    • Communities of green sulfur bacteria in marine and saline habitats analyzed by gene sequences of 16S rRNA and Fenna-Matthews-Olson protein
    • B Alexander JF Imhoff 2006 Communities of green sulfur bacteria in marine and saline habitats analyzed by gene sequences of 16S rRNA and Fenna-Matthews-Olson protein Int Microbiol 9 259 266 1:CAS:528: DC%2BD2sXhvVWrs7o%3D 17236159 (Pubitemid 46155029)
    • (2006) International Microbiology , vol.9 , Issue.4 , pp. 259-266
    • Alexander, B.1    Imhoff, J.F.2
  • 3
    • 0036315809 scopus 로고    scopus 로고
    • Phylogeny of green sulfur bacteria on the basis of gene sequences of 16S rRNA and of the Fenna-Matthews-Olson protein
    • DOI 10.1007/s00203-002-0432-4
    • B Alexander JH Andersen RP Cox JF Imhoff 2002 Phylogeny of green sulfur bacteria on the basis of gene sequences of 16S rRNA and of the Fenna-Matthews-Olson protein Arch Microbiol 178 131 140 10.1007/s00203-002-0432- 4 1:CAS:528:DC%2BD38XmsFalur4%3D 12115058 (Pubitemid 34762254)
    • (2002) Archives of Microbiology , vol.178 , Issue.2 , pp. 131-140
    • Alexander, B.1    Andersen, J.H.2    Cox, R.P.3    Imhoff, J.F.4
  • 4
    • 67649160137 scopus 로고    scopus 로고
    • Prosthecochloris indica sp. nov., a novel green sulfur bacterium from a marine aquaculture pond, Kakinada, India
    • 10.2323/jgam.55.163 19436133
    • P Anil Kumar TNR Srinivas C Sasikala CV Ramana J Süling J Imhoff 2009 Prosthecochloris indica sp. nov., a novel green sulfur bacterium from a marine aquaculture pond, Kakinada, India J Gen Appl Microbiol 55 163 169 10.2323/jgam.55.163 19436133
    • (2009) J Gen Appl Microbiol , vol.55 , pp. 163-169
    • Anil Kumar, P.1    Srinivas, T.N.R.2    Sasikala, C.3    Ramana, C.V.4    Süling, J.5    Imhoff, J.6
  • 5
    • 0001480495 scopus 로고
    • Separation of bacteriochlorophyll homologues from green photosynthetic sulfur bacteria by reversed-phase HPLC
    • 10.1007/BF02184156 1:CAS:528:DyaK2cXmt1KlsLc%3D
    • C Borrego LJ Garcia-Gil 1994 Separation of bacteriochlorophyll homologues from green photosynthetic sulfur bacteria by reversed-phase HPLC Photosynth Res 41 157 163 10.1007/BF02184156 1:CAS:528:DyaK2cXmt1KlsLc%3D
    • (1994) Photosynth Res , vol.41 , pp. 157-163
    • Borrego, C.1    Garcia-Gil, L.J.2
  • 7
    • 0027220254 scopus 로고
    • Ecology and physiology of phototrophic bacteria and sulfate-reducing bacteria in marine salterns
    • P Caumette 1993 Ecology and physiology of phototrophic bacteria and sulfate-reducing bacteria in marine salterns Experientia 49 473 481 10.1007/BF01955148 1:CAS:528:DyaK3sXmsVGjsLk%3D (Pubitemid 23257968)
    • (1993) Experientia , vol.49 , Issue.6-7 , pp. 473-481
    • Caumette, P.1
  • 9
    • 33846046530 scopus 로고    scopus 로고
    • 217 000-year-old DNA sequences of green sulfur bacteria in Mediterranean sapropels and their implications for the reconstruction of the paleoenvironment
    • DOI 10.1111/j.1462-2920.2006.01134.x
    • MJ Coolen J Overmann 2007 217000-year-old DNA sequences of green sulfur bacteria in Mediterranean sapropels and their implications for the reconstruction of the paleoenvironment Environ Microbiol 9 238 249 10.1111/j.1462-2920.2006.01134.x 1:CAS:528:DC%2BD2sXis1Slur4%3D 17227428 (Pubitemid 46059014)
    • (2007) Environmental Microbiology , vol.9 , Issue.1 , pp. 238-249
    • Coolen, M.J.L.1    Overmann, J.2
  • 10
    • 0000122573 scopus 로고
    • PHYLIP, phylogeny inference package version 3.6
    • J Felsenstein 1989 PHYLIP, phylogeny inference package version 3.6 Cladistics 5 164 166
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 11
    • 0030841729 scopus 로고    scopus 로고
    • Phylogeny of the genus Chlorobium based on 16S rDNA sequence
    • DOI 10.1016/S0378-1097(97)00174-2, PII S0378109797001742
    • JB Figueras LJ Garcia-Gil CA Abella 1997 Phylogeny of the genus Chlorobium based on 16S rRNA gene sequence FEMS Microbiol Lett 152 31 36 10.1111/j.1574-6968.1997.tb10405.x 1:CAS:528:DyaK2sXkt1SmsLw%3D 9228767 (Pubitemid 27293264)
    • (1997) FEMS Microbiology Letters , vol.152 , Issue.1 , pp. 31-36
    • Figueras, J.B.1    Garcia-Gil, L.J.2    Abella, C.A.3
  • 12
    • 0036225056 scopus 로고    scopus 로고
    • Phylogeny of the PscB reaction center protein from green sulfur bacteria
    • DOI 10.1023/A:1014973902239
    • JB Figueras RP Cox P Hojrup HP Permentier M Miller 2002 Phylogeny of the PscB reaction center protein from green sulfur bacteria Photosynth Res 71 155 164 10.1023/A:1014973902239 1:CAS:528:DC%2BD38XjsFGmtbc%3D 16228509 (Pubitemid 34416084)
    • (2002) Photosynthesis Research , vol.71 , Issue.1-2 , pp. 155-164
    • Figueras, J.B.1    Cox, R.P.2    Hojrup, P.3    Permentier, H.P.4    Miller, M.5
  • 14
    • 0344211830 scopus 로고    scopus 로고
    • A comparative study of bchG from green photosynthetic bacteria
    • LJ Garcia-Gil FB Gich X Fuentes-Garcia 2003 A comparative study of bchG from green photosynthetic bacteria Arch Microbiol 179 108 115 1:CAS:528:DC%2BD3sXnvFKrsA%3D%3D 12560989 (Pubitemid 36241195)
    • (2003) Archives of Microbiology , vol.179 , Issue.2 , pp. 108-115
    • Garcia-Gil, L.J.1    Gich, F.B.2    Fuentes-Garcia, X.3
  • 15
    • 4143053863 scopus 로고    scopus 로고
    • Biogeography, evolution, and diversity of epibionts in phototrophic consortia
    • DOI 10.1128/AEM.70.8.4821-4830.2004
    • J Glaeser J Overmann 2004 Biogeography, evolution, and diversity of epibionts in phototrophic consortia Appl Environ Microbiol 70 4821 4830 10.1128/AEM.70.8.4821-4830.2004 1:CAS:528:DC%2BD2cXms1elu7c%3D 15294820 (Pubitemid 39095510)
    • (2004) Applied and Environmental Microbiology , vol.70 , Issue.8 , pp. 4821-4830
    • Glaeser, J.1    Overmann, J.2
  • 16
    • 0042491041 scopus 로고
    • Caracterización limnológica de la laguna Salada de Chiprana (Zaragoza, España) y sus comunidades de bacterias fototróficas
    • MC Guerrero J Balsa M Pascual B Martínez C Montes 1991 Caracterización limnológica de la laguna Salada de Chiprana (Zaragoza, España) y sus comunidades de bacterias fototróficas Limnetica 7 83 96
    • (1991) Limnetica , vol.7 , pp. 83-96
    • Guerrero, M.C.1    Balsa, J.2    Pascual, M.3    Martínez, B.4    Montes, C.5
  • 17
    • 5044240973 scopus 로고    scopus 로고
    • Bellerophon: A program to detect chimeric sequences in multiple sequence alignments
    • DOI 10.1093/bioinformatics/bth226
    • T Huber G Faulkner P Hugenholtz 2004 Bellerophon: a program to detect chimeric sequences in multiple sequence alignments Bioinformatics 20 2317 2319 10.1093/bioinformatics/bth226 1:CAS:528:DC%2BD2cXnvVOrsbk%3D 15073015 (Pubitemid 39341624)
    • (2004) Bioinformatics , vol.20 , Issue.14 , pp. 2317-2319
    • Huber, T.1    Faulkner, G.2    Hugenholtz, P.3
  • 18
    • 0037217221 scopus 로고    scopus 로고
    • Chimeric 16S rDNA sequences of diverse origin are accumulating in the public databases
    • DOI 10.1099/ijs.0.02441-0
    • P Hugenholtzt T Huber 2003 Chimeric 16S rRNA gene sequences of diverse origin are accumulating in the public databases Int J Syst Evol Microbiol 53 289 293 10.1099/ijs.0.02441-0 12656186 (Pubitemid 36285250)
    • (2003) International Journal of Systematic and Evolutionary Microbiology , vol.53 , Issue.1 , pp. 289-293
    • Hugenholtz, P.1    Huber, T.2
  • 19
    • 0035729785 scopus 로고    scopus 로고
    • True marine and halophilic anoxygenic phototrophic bacteria
    • DOI 10.1007/s002030100326
    • JF Imhoff 2001 True marine and halophilic anoxygenic phototrophic bacteria Arch Microbiol 176 243 254 10.1007/s002030100326 1:CAS:528: DC%2BD3MXotVSiu7c%3D 11685368 (Pubitemid 34270796)
    • (2001) Archives of Microbiology , vol.176 , Issue.4 , pp. 243-254
    • Imhoff, J.F.1
  • 20
    • 0041810417 scopus 로고    scopus 로고
    • Phylogenetic taxonomy of the family Chlorobiaceae on the basis of 16S rRNA and fmo (Fenna-Matthews-Olson protein) gene sequences
    • DOI 10.1099/ijs.0.02403-0
    • JF Imhoff 2003 Phylogenetic taxonomy of the family Chlorobiaceae on the basis of 16S rRNA and fmo (Fenna-Matthews-Olson protein) gene sequences Int J Syst Evol Microbiol 53 941 951 10.1099/ijs.0.02403-0 1:CAS:528: DC%2BD3sXmsF2isLc%3D 12892110 (Pubitemid 36896497)
    • (2003) International Journal of Systematic and Evolutionary Microbiology , vol.53 , Issue.4 , pp. 941-951
    • Imhoff, J.F.1
  • 21
    • 84986798986 scopus 로고
    • Microbial transformation of sulfur compounds in a stratified lake (Solar Lake, Sinai)
    • 10.4319/lo.1979.24.5.0799
    • BB Jorgensen JG Kuenen Y Cohen 1979 Microbial transformation of sulfur compounds in a stratified lake (Solar Lake, Sinai) Limnol Oceanogr 24 799 822 10.4319/lo.1979.24.5.0799
    • (1979) Limnol Oceanogr , vol.24 , pp. 799-822
    • Jorgensen, B.B.1    Kuenen, J.G.2    Cohen, Y.3
  • 22
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • H. Munro (eds). Academic Press New York
    • Jukes TH, Cantor CR (1969) Evolution of protein molecules. In: Munro H (ed) Mammalian protein metabolism. Academic Press, New York, pp 21-132
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 23
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • DOI 10.1007/BF01731581
    • M Kimura 1980 A simple model for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences J Mol Evol 16 111 120 10.1007/BF01731581 1:CAS:528:DyaL3MXmtFSktg%3D%3D 7463489 (Pubitemid 11166431)
    • (1980) Journal of Molecular Evolution , vol.16 , Issue.2 , pp. 111-120
    • Kimura, M.1
  • 26
    • 0002780901 scopus 로고
    • Bases científicas para la protección de los humedales en españa
    • Real Academia de Ciencias Exactas FyN (ed) Madrid
    • Montes C, Martino P (1987) Bases Científicas Para La Protección De Los Humedales En España. In: Real Academia de Ciencias Exactas FyN (ed) Las lagunas salinas españolas. Madrid, pp 95-146
    • (1987) Las Lagunas Salinas Españolas , pp. 95-146
    • Montes, C.1    Martino, P.2
  • 27
    • 33646236070 scopus 로고    scopus 로고
    • Purification and concentration of DNA from aqueous solutions
    • F.M. Ausubel R. Brent R.E. Kingston D.D. Moore J.G. Seidman J.A. Smith K. Struhl (eds). Wiley New York
    • Moore DD (1996) Purification and concentration of DNA from aqueous solutions. In: Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K (eds) Current protocol in molecular biology. Wiley, New York
    • (1996) Current Protocol in Molecular Biology
    • Moore, D.D.1
  • 28
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • G Muyzer EC Waal AG Uitterlinden 1993 Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA Appl Environ Microbiol 59 695 700 1:CAS:528:DyaK3sXit1Kktrk%3D 7683183 (Pubitemid 23072343)
    • (1993) Applied and Environmental Microbiology , vol.59 , Issue.3 , pp. 695-700
    • Muyzer, G.1    De Waal, E.C.2    Uitterlinden, A.G.3
  • 30
    • 0001193602 scopus 로고    scopus 로고
    • Green sulfur bacteria
    • G.M. Garrity J.G. Holt (eds). Williams and Wilkins Baltimore
    • Overmann J (2001) Green sulfur bacteria. In: Garrity GM, Holt JG (eds) Bergey's manual of systematic bacteriology, vol 1. Williams and Wilkins, Baltimore, pp 601-623
    • (2001) Bergey's Manual of Systematic Bacteriology , vol.1 , pp. 601-623
    • Overmann, J.1
  • 31
    • 0031001691 scopus 로고    scopus 로고
    • Phylogeny and molecular fingerprinting of green sulfur bacteria
    • DOI 10.1007/s002030050448
    • J Overmann C Tuschak 1997 Phylogeny and molecular fingerprinting of green sulfur bacteria Arch Microbiol 167 302 309 10.1007/s002030050448 1:CAS:528:DyaK2sXislOju7k%3D 9094228 (Pubitemid 27166223)
    • (1997) Archives of Microbiology , vol.167 , Issue.5 , pp. 302-309
    • Overmann, J.1    Tuschak, C.2
  • 32
    • 0032809368 scopus 로고    scopus 로고
    • Specific detection of different phylogenetic groups of chemocline bacteria based on PCR and denaturing gradient gel electrophoresis of 16S rRNA gene fragments
    • DOI 10.1007/s002030050744
    • J Overmann MJL Coolen C Tuschak 1999 Specific detection of different phylogenetic groups of chemocline bacteria based on PCR and denaturing gradient gel electrophoresis of 16S rRNA gene fragments Arch Microbiol 172 83 96 10.1007/s002030050744 1:CAS:528:DyaK1MXltlertbo%3D 10415169 (Pubitemid 29362070)
    • (1999) Archives of Microbiology , vol.172 , Issue.2 , pp. 83-94
    • Overmann, J.1    Coolen, M.J.L.2    Tuschak, C.3
  • 33
    • 0001011469 scopus 로고
    • Green bacteria
    • J.T. Stanley M.P. Bryant N. Pfennig J.G. Holt (eds). Williams & Wilkins Baltimore
    • Pfennig N, Trüper HG (1989) Green bacteria. In: Stanley JT, Bryant MP, Pfennig N, Holt JG (eds) Bergey's manual of systematic bacteriology, vol 3. Williams & Wilkins, Baltimore, pp 1682-1707
    • (1989) Bergey's Manual of Systematic Bacteriology , vol.3 , pp. 1682-1707
    • Pfennig, N.1    Trüper, H.G.2
  • 35
    • 0346784212 scopus 로고
    • Limnological cycle of the coastal lagoon la Massona (Girona, NE Spain). Origin, dynamics and influence of the sporadic seawater infalls on the meromixis
    • 1:CAS:528:DyaK3MXls1GqtL8%3D
    • XG Riera CA Abella 1991 Limnological cycle of the coastal lagoon La Massona (Girona, NE Spain). Origin, dynamics and influence of the sporadic seawater infalls on the meromixis Verh Internat Verein Limnol 24 1029 1031 1:CAS:528:DyaK3MXls1GqtL8%3D
    • (1991) Verh Internat Verein Limnol , vol.24 , pp. 1029-1031
    • Riera, X.G.1    Abella, C.A.2
  • 36
    • 0002838632 scopus 로고
    • Convenient method to prepare neutral sulfide solution for cultivation of phototrophic sulfur bacteria
    • 10.1007/BF00692721 1:CAS:528:DyaL2cXls1Kqtro%3D
    • E Siefert N Pfennig 1984 Convenient method to prepare neutral sulfide solution for cultivation of phototrophic sulfur bacteria Arch Microbiol 139 100 101 10.1007/BF00692721 1:CAS:528:DyaL2cXls1Kqtro%3D
    • (1984) Arch Microbiol , vol.139 , pp. 100-101
    • Siefert, E.1    Pfennig, N.2
  • 37
    • 0028028182 scopus 로고
    • Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
    • 10.1099/00207713-44-4-846
    • E Stakebrandt BM Goebel 1994 Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology Int J Syst Bacteriol 44 846 849 10.1099/00207713-44-4-846
    • (1994) Int J Syst Bacteriol , vol.44 , pp. 846-849
    • Stakebrandt, E.1    Goebel, B.M.2
  • 38
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • 10.1093/nar/22.22.4673 1:CAS:528:DyaK2MXitlSgu74%3D 7984417
    • JD Thompson DG Higgins TJ Gibson 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 22 4673 4680 10.1093/nar/22.22.4673 1:CAS:528:DyaK2MXitlSgu74%3D 7984417
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 39
    • 34250582917 scopus 로고
    • Sulphur metabolism in Thiorhodaceae I. Quantiative measurements on growing cells of Chromatium okenii
    • 10.1007/BF02046728
    • HG Trüper HG Schlegel 1964 Sulphur metabolism in Thiorhodaceae I. Quantiative measurements on growing cells of Chromatium okenii Antonie van Leeuwenhoek 30 225 238 10.1007/BF02046728
    • (1964) Antonie Van Leeuwenhoek , vol.30 , pp. 225-238
    • Trüper, H.G.1    Schlegel, H.G.2
  • 40
    • 77957006623 scopus 로고
    • Techniques for the enrichment, isolation and maintenance of the photosynthetic bacteria
    • A: San Pietro (ed)
    • Van Niel CB (1971) Techniques for the enrichment, isolation and maintenance of the photosynthetic bacteria. A: San Pietro (ed). Methods Enzimol 23:3-28
    • (1971) Methods Enzimol , vol.23 , pp. 3-28
    • Van Niel, C.B.1
  • 41
  • 42
    • 0036224710 scopus 로고    scopus 로고
    • Green sulfur bacteria from hypersaline Chiprana Lake (Monegros, Spain): Habitat description and phylogenetic relationship of isolated strains
    • DOI 10.1023/A:1014915900644
    • X Vila R Guyoneaud XP Cristina JB Figueras CA Abella 2002 Green sulfur bacteria from hypersaline Chiprana Lake (Monegros, Spain): habitat description and phylogenetic relationship of isolated strains Photosynth Res 71 165 172 10.1023/A:1014915900644 1:CAS:528:DC%2BD38XjsFGmur4%3D 16228510 (Pubitemid 34416085)
    • (2002) Photosynthesis Research , vol.71 , Issue.1-2 , pp. 165-172
    • Vila, X.1    Guyoneaud, R.2    Cristina, X.P.3    Figueras, J.B.4    Abella, C.A.5
  • 43
    • 0026067797 scopus 로고
    • SSU ribosomal DNA amplification for phylogenetic study
    • 1:CAS:528:DyaK3MXhsl2lurY%3D 1987160
    • WG Weisburg SM Barns DA Pelletier DJ Lane 1991 SSU ribosomal DNA amplification for phylogenetic study J Bacteriol 173 697 703 1:CAS:528:DyaK3MXhsl2lurY%3D 1987160
    • (1991) J Bacteriol , vol.173 , pp. 697-703
    • Weisburg, W.G.1    Barns, S.M.2    Pelletier, D.A.3    Lane, D.J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.