Evaluation of 16 loci to examine the cross-species utility of single nucleotide polymorphism arrays

Animal Genetics

Volumn 41, Issue 2, 2010, Pages 199-202

  Sechi, T ^a,b   Coltman, D W ^b   Kijas, J W ^c  

^a CSIRO   (Australia)

^b Research Unit Genetics and Biotechnology   (Italy)

^c UNIVERSITY OF ALBERTA   (Canada)

Author keywords

Sheep; Single nucleotide polymorphism; Single nucleotide polymorphism array

Indexed keywords

BOS; CAPRA HIRCUS; OVIS ARIES; OVIS ARIES MUSIMON;

ANIMAL; ARTICLE; CATTLE; DNA MICROARRAY; GENETICS; GOAT; SHEEP; SINGLE NUCLEOTIDE POLYMORPHISM;

ANIMALS; CATTLE; GOATS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; POLYMORPHISM, SINGLE NUCLEOTIDE; SHEEP;

EID: 77951646165     PISSN: 02689146     EISSN: 13652052     Source Type: Journal    
DOI: 10.1111/j.1365-2052.2009.01972.x     Document Type: Article

References (10)

1. Charlier C., Coppieters W., Rollin F. et al. (2008) Highly effective SNP-based association mapping and management of recessive defects in livestock. Nature Genetics 40, 449-454
2. Hacia J.G., Fan J.B., Ryder O. et al. (1999) Determination of ancestral alleles for human single-nucleotide polymorphisms using high-density oligonucleotide arrays. Nature Genetics 22, 164-167
3. Hayes B.J., Chamberlain A.J., Maceachern S., Savin K., McPartlan H., Macleod I., Sethuraman L. & Goddard M.E. (2009) A genome map of divergent artificial selection between Bos taurus dairy cattle and Bos taurus beef cattle. Animal Genetics 40, 176-184
4. Karlsson E.K., Baranowska I., Wade C.M. et al. (2007) Efficient mapping of mendelian traits in dogs through genome-wide association. Nature Genetics 39, 1321-1328
5. Kijas J.W., Townley D., Dalrymple B.P. et al. (2009) A genome wide survey of SNP variation reveals the genetic structure of sheep breeds. PLoS ONE 4, e4668.
6. McKay S.D., Schnabel R.D., Murdoch B.M. et al. (2008) An assessment of population structure in eight breeds of cattle using a whole genome SNP panel. BMC Genetics 9, 37.
7. Oliphant A., Barker D.L., Stuelpnagel J.R. & Chee M.S. (2002) BeadArray technology: enabling an accurate, cost-effective approach to high-throughput genotyping. BioTechniques Suppl., 56-8, 60-61
8. Van Tassell C.P., Smith T.P., Matukumalli L.K., Taylor J.F., Schnabel R.D., Lawley C.T., Haudenschild C.D., Moore S.S., Warren W.C. & Sonstegard T.S. (2008) SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries. Nature Methods 5, 247-252
9. Wiedmann R.T., Smith T.P. & Nonneman D.J. (2008) SNP discovery in swine by reduced representation and high throughput pyrosequencing. BMC Genetics 9, 81.
10. Zenger K.R., Khatkar M.S., Cavanagh J.A., Hawken R.J. & Raadsma H.W. (2007) Genome-wide genetic diversity of Holstein Friesian cattle reveals new insights into Australian and global population variability, including impact of selection. Animal Genetics 38, 7-14.