The relations between 'standard' fluvial habitat variables and turbulent flow at multiple scales in morphological units of a gravel-bed river

River Research and Applications

Volumn 26, Issue 4, 2010, Pages 439-455

  Roy, M L ^a   Roy, A G ^a   Legendre, P ^a  

^a UNIVERSITÉ DE MONTRÉAL   (Canada)

Author keywords

Ecohydraulics; Fish habitat; PCNM; Spatial modelling; Turbulence

Indexed keywords

BED ROUGHNESS; CHANNEL MORPHOLOGY; COMPLEXITY; ECOHYDROLOGY; FISH; FLOW VELOCITY; GRAVEL BED STREAM; HABITAT USE; MATRIX; NUMERICAL MODEL; PRINCIPAL COMPONENT ANALYSIS; RIVER BED; TIME SERIES ANALYSIS; TURBULENCE; TURBULENT FLOW;

EID: 77951482529     PISSN: 15351459     EISSN: 15351467     Source Type: Journal    
DOI: 10.1002/rra.1281     Document Type: Article

References (58)

1. Bergstedt MS, Hondzo MM, Cotner JB. 2004. Effects of small scale fluid motion on bacterial growth and respiration. Freshwater Biology 49(1): 28-40.
2. Best JL. 1993. On the interactions between turbulent flow structure, sediment transport and berdform development: some considerations from recent experimental research. In: Clifford N. J., French J. R. and Hardisty J., Editors. Turbulence: Perspectives on Flow and Sediment Transport John Wiley, Chichester, 61-92.
3. Biggs BJF, Nikora VI, Snelder TH. 2005. Linking scales of flow variability to lotic ecosystem structure and function. River Research and Applications. 21(2-3): 283-298.
4. Borcard D, Legendre P. 2002. All-scale spatial analysis of ecological data by means of principal coordinates of neighbour matrices. Ecological Modelling 153(1-2): 51-68.
5. Borcard D, Legendre P, Avois-Jacquet C, Tuomisto H. 2004. Dissecting the spatial structure of ecological data at multiple scales. Ecology 85(7): 1826-1832.
6. Bouckaert FW, Davis J. 1998. Microflow regimes and the distribution of macroinvertebrates around stream boulders. Freshwater Biology 40(1): 77-86.
7. Box GEP, Cox DR. 1964. An analysis of transformations. Journal of Royal Statistical Society Series B 26(43): 211-243.
8. Brayshaw AC, Frostick LE, Reid I. 1983. The hydrodynamics of particle clusters and sediment entrainment in coarse alluvial channels. Sedimentology 30(1): 137-143.
9. Buffin-Belanger T, Roy AG. 1998. Effects of a pebble cluster on the turbulent structure of a depth-limited flow in a gravel-bed river. Geomorphology 25(3-4): 249-267.
10. Buffin-Belanger T, Roy AG, Kirkbride AD. 2000. On large-scale flow structures in a gravel-bed river. Geomorphology 32(3-4): 417-435.
11. Buffin-Belanger T, Roy AG. 2005. 1 min in the life of a river: selecting the optimal record length for the measurement of turbulence in fluvial boundary layers. Geomorphology 68(1-2): 77-94.
12. Buffin-Belanger T, Rice S, Reid I, Lancaster J. 2006. Spatial heterogeneity of near-bed hydraulics above a patch of river gravel. Water Resources Research 42(4): 12.
13. Church M. 2006. Multiple scales in rivers, in Habersack H, Piegay H and Rinaldi M (Eds.), Gravel-bed rivers VI: From Process Understanding to River Restoration, Elsevier B. V. pp. 3-32.
14. Cotel AJ, Webb PW, Tritico H. 2006. Do brown trout choose locations with reduced turbulence? Transactions of the American Fisheries Society 135(3): 610-619.
15. Dancey CL, Balakrishnan M, Diplas P, Papanicolaou AN. 2000. The spatial inhomogeneity of turbulence above a fully rough, packed bed in open channel flow. Experiments in Fluids 29(4): 402-410.
16. Dray S, Legendre P, Peres-Neto PR. 2006. Spatial modelling: a comprehensive framework for principal coordinate analysis of neighbour matrices (PCNM). Ecological Modelling 196(3-4): 483-493.
17. Enders EC, Boisclair D, Roy AG. 2003. The effect of turbulence on the cost of swimming for juvenile atlantic salmon (salmo salar). Canadian Journal of Fisheries and Aquatic Sciences 60(9): 1149-1160.
18. Enders EC, Buffin-Belanger T, Boisclair D, Roy AG. 2005. The feeding behaviour of juvenile atlantic salmon in relation to turbulent flow. Journal of Fish Biology 66(1): 242-253.
19. Ezekiel M. 1930. Methods of correlation analysis. John Wiley: NJ.
20. Frechette M, Butman CA, Geyer WR. 1989. The importance of boundary-layer flows in supplying phytoplankton to the benthic suspension feeder Mytilus-edulis-L. Limnology and Oceanography 34(1): 19-36.
21. Goring DG, Nikora VI. 2002. Despiking acoustic doppler velocimeter data. Journal of Hydraulic Engineering-Asce 128(1): 117-126.
22. Gower JC. 1966. Some distance properties of latent root and vector methods used in multivariate analysis. Biometrika 53: 325-338.
23. Hart DD, Clark BD, Jasentuliyana A. 1996. Fine-scale field measurement of benthic flow environments inhabited by stream invertebrates. Limnology and Oceanography 41(2): 297-308.
24. Hart DD, Finelli CM. 1999. Physical-biological coupling in streams: the pervasive effects of flow on benthic organisms. Annual Review of Ecology and Systematics 30: 363-395.
25. Hughes NF, Dill LM. 1990. Position choice by drift-feeding salmonids: model and test for Arctic grayling (Thymallus arcticus) in subarctic mountain streams, Interior Alaska. Canadian Journal of Fisheries and Aquatic Sciences 47: 2039-2048.
26. Labiod C, Godillot R, Caussade B. 2007. The relationship between stream periphyton dynamics and near-bed turbulence in rough open-channel flow. Ecological Modelling 209(2-4): 78-96.
27. Lacey RWJ, Legendre P, Roy AG. 2007. Spatial-scale partitioning of in situ turbulent flow data over a pebble cluster in a gravel-bed river. Water Resources Research 43: 3.
28. Lacey RWJ, Roy AG. 2007. A comparative study of the turbulent flow field with and without a pebble cluster in a gravel bed river. Water Resources Research 43(5): 7.
29. Lamarre H, Roy AG. 2005. Reach scale variability of turbulent flow characteristics in a gravel-bed river. Geomorphology 68(1-2): 95-113.
30. Lamarre H. 2006. Sediment transport, sedimentary structures and bed stability in step-pool channels. PhD thesis. Université de Montréal, 293 p.
31. Lane SN, Biron PM, Bradbrook KF, Butler JB, Chandler JH, Crowell MD, Mclelland SJ, Richards KS, Roy AG. 1998. Three-dimensional measurement of river channel flow processes using acoustic doppler velocimetry. Earth Surface Processes and Landforms 23(13): 1247-1267.
32. Lawless M, Robert A. 2001. Three-dimensional flow structure around small-scale bedforms in a simulated gravel-bed environment. Earth Surface Processes and Landforms 26(5): 507-522.
33. Legendre P. 1993. Spatial autocorrelation: trouble or new paradigm? Ecology 74: 1659-1673.
34. Legendre P, Legendre L. 1998. Numerical Ecology. Developments in Environmental Modelling 20. Elsevier: Amsterdam.
35. Legleiter CJ, Phelps TL, Wohl EE. 2007. Geostatistical analysis of the effects of stage and roughness on reach-scale spatial patterns of velocity and turbulence intensity. Geomorphology 83(3-4): 322-345.
36. Leung ES, Rosenfeld JS, Bernhardt JR. 2009. Habitat effects on invertebrate drift in a small trout stream: implications for prey availability to drift-feeding fish. Hydrobiologia 623(1): 113-125.
37. Liao JC, Beal DN, Lauder GV, Triantafyllou MS. 2003. Fish exploiting vortices decrease muscle activity. Science 302(5650): 1566-1569.
38. Liao JC. 2007. A review of fish swimming mechanics and behaviour in altered flows. Philosophical Transactions of the Royal Society B-Biological Sciences 362(1487): 1973-1993.
39. Liu Z, Adrian RJ, Hanratty TJ. 2001. Large-scale modes of turbulent channel flow: transport and structure. Journal of Fluid Mechanics 448: 53-80.
40. Lu S, Willmarth W. 1973. Measurement of the structure of the Reynolds stress in a turbulent boundary layer. Journal of Fluid Mechanics 60: 472-478.
41. Luchik TS, Tiederman WG. 1987. Timescale and structure of ejections and bursts in turbulent channel flows. Journal of Fluid Mechanics 174: 529-552.
42. Moir HJ, Gibbins CN, Soulsby C, Webb JH. 2006. Discharge and hydraulic interactions in contrasting channel morphologies and their influence on site utilization by spawning Atlantic salmon (Salmo salar). Canadian Journal of Fisheries and Aquatic Sciences 63(11): 2567-2585.
43. Moir HJ, Pasternack GB. 2008. Relationships between mesoscale morphological units, stream hydraulics and Chinook salmon (Oncorhynchus tshawytscha) spawning habitat on the Lower Yuba River, California. Geomorphology 100(3-4): 527-548.
44. Nikora VI, Goring DG, Biggs BJF. 1998. On gravel-bed roughness characterization. Water Resources Research 34(3): 517-527.
45. Nikora VI, Aberle J, Biggs BJF, Jowett IG, Sykes JRE. 2003. Effects of fish size, time-to-fatigue and turbulence on swimming performance: a case study of Galaxias maculatus. Journal of Fish Biology 63(6): 1365-1382.
46. Nikora V. 2006. Hydrodynamics of gravel-bed rivers, scale issues, in Habersack H, Piegay H and Rinaldi M (Eds), Gravel-bed rivers VI: From Process Understanding to River Restoration, Elsevier B. V. pp. 61-84.
47. Oksanen J, Kindt R, Legendre P, O'Hara RB. 2007. Community Ecology Package version 1.8-6. http://cran.r-project.org/
48. Quinn JM, Hickey CW, Linklater W. 1996. Hydraulic influences on periphyton and benthic macroinvertebrates: Simulating the effects of upstream bed roughness. Freshwater Biology 35(2): 301-309.
49. Roy AG, Buffin-Belanger T, Lamarre H, Kirkbride AD. 2004. Size, shape and dynamics of large-scale turbulent flow structures in a gravel-bed river. Journal of Fluid Mechanics 500: 1-27.
50. Shvidchenko AB, Pender G. 2001. Macroturbulent structure of open-channel flow over gravel beds. Water Resources Research 37(3): 709-719.
51. Smith DL, Brannon EL, Odeh M. 2005. Response of juvenile rainbow trout to turbulence produced by prismatoidal shapes. Transactions of the American Fisheries Society 134(3): 741-753.
52. Smith DL, Brannon EL, Shafii B, Odeh M. 2006. Use of the average and fluctuating velocity components for estimation of volitional rainbow trout density. Transactions of the American Fisheries Society 135(2): 431-441.
53. Smith DL, Brannon EL. 2007. Influence of cover on mean column hydraulic characteristics in small pool riffle morphology streams. River Research and Applications 23(2): 125-139.
54. Stoecker DK, Long A, Suttles SE, Sanford LP. 2006. Effect of small-scale shear on grazing and growth of the dinoflagellate Pfiesteria piscicida. Harmful Algae 5: 407-418.
55. Stone MC, Hotchkiss RH. 2007. Turbulence descriptions in two cobble-bed river reaches. Journal of Hydraulic Engineering-Asce 133(12): 1367-1378.
56. Tritico HM, Hotchkiss RH. 2005. Unobstructed and obstructed turbulent flow in gravel bed rivers. Journal of Hydraulic Engineering-Asce 131(8): 635-645.
57. Weissburg MJ, Zimmerfaust RK. 1993. Life and death in moving fluids-hydrodynamic effects on chemosensory-mediated predation. Ecology 74(5): 1428-1443.
58. Wolman MG. 1954. A method of sampling coarse river-bed material. Transactions of the American Geophysical Union 35(6): 951-956.