Evaluation of the reliability of maize reference assays for GMO quantification

Analytical and Bioanalytical Chemistry

Volumn 396, Issue 6, 2010, Pages 2189-2201

  Papazova, Nina ^a   Zhang, David ^b   Gruden, Kristina ^c   Vojvoda, Jana ^c   Yang, Litao ^d   Gašparič, Meti Buh ^c   Blejec, Andrej ^c   Fouilloux, Stephane ^b   De Loose, Marc ^a   Taverniers, Isabel ^a  

^a INSTITUTE FOR AGRICULTURAL AND FISHERIES RESEARCH ILVO   (Belgium)

^b GEVES Domaine du Magneraud   (France)

^c NATIONAL INSTITUTE OF BIOLOGY   (Slovenia)

^d SHANGHAI JIAO TONG UNIVERSITY   (China)

Author keywords

Endogenous target taxon; GMO; Real time PCR quantification; Reference assay; Reliability

Indexed keywords

ALCOHOL DEHYDROGENASE; BASE PAIRS; EVENT-SPECIFIC; GENETICALLY MODIFIED ORGANISMS; GENOMIC REGIONS; GEOGRAPHICAL ORIGINS; GMO; HIGH MOBILITY GROUP PROTEINS; INVERTASE GENE; MAIZE (ZEA MAYS L.); NUCLEOTIDE SEQUENCES; PCR AMPLIFICATION; PERFORMANCE TESTS; QUANTIFICATION METHODS; REAL-TIME PCR; REAL-TIME PCR QUANTIFICATION; REFERENCE ASSAY; SINGLE-NUCLEOTIDE POLYMORPHISMS; STABILITY STUDY; TARGET SEQUENCES; TRANSGENICS;

AMPLIFICATION; GEOGRAPHICAL REGIONS; NUCLEOTIDES; PLANTS (BOTANY); POLYMERASE CHAIN REACTION; RELIABILITY; TARGETS;

ASSAYS;

VEGETABLE PROTEIN;

ARTICLE; EVALUATION; GENETICS; MAIZE; METHODOLOGY; POLYMERASE CHAIN REACTION; STANDARD; TRANSGENIC PLANT;

PLANT PROTEINS; PLANTS, GENETICALLY MODIFIED; POLYMERASE CHAIN REACTION; REFERENCE STANDARDS; ZEA MAYS;

ZEA MAYS;

EID: 77951298659     PISSN: 16182642     EISSN: 16182650     Source Type: Journal    
DOI: 10.1007/s00216-009-3386-4     Document Type: Article

References (33)

1. James C (2009) Global Status of Commercialized Biotech/GM Crops in 2008. ISAAA Brief 39: Executive Summary
2. Directive 2001/18/EC of the European Parliament and the Council of 12 March 2001 on the deliberate release into the environment of genetically modified organisms and repealing Council Directive 90/220/EEC. Off J Eur Union L106:1-38
3. Regulation (EC) No. 1829/2003 of the European Parliament and the Council of 22 September 2003 on genetically modified food and feed. Off J Eur Union L266:1-23
4. Regulation (EC) No. 1830/2003 of the European Parliament and the Council of 22 September 2003 concerning the traceability and labelling of genetically modified organisms and the traceability of food and feed products produced from genetically modified organisms and amending Directive 2001/18/EC. Off J Eur Union L266:24-28
5. Commission Regulation (EC) No 641/2004 of 6 April 2004 on detailed rules for the implementation of Regulation (EC) No 1829/2003 of the European Parliament and of the Council as regards the application for the authorisation of new genetically modified food and feed, the notification of existing products and adventitious or technically unavoidable presence of genetically modified material which has benefited from a favourable risk evaluation. Off J Eur Union L102:14-25
6. Commission Recommendation 2004/787/EC of 4 October 2004 on technical guidance for sampling and detection of genetically modified organisms and material produced from genetically modified organisms as or in products in the context of Regulation (EC) No 1830/2003. Off J Eur Union L348:18-26
7. Commission Regulation (EC) No 1981/2006 of 22 December 2006 on detailed rules for the implementation of Article 32 of Regulation (EC) No 1829/2003 of the European Parliament and of the Council as regards the community reference laboratory for genetically modified organisms. Off J Eur Union L386:99-109
8. Community Reference Laboratory official website: http://www.crl-gmo. europa.eu
9. OECD (2003) Consensus document on the biology of Zea mays subsp. Mays (maize). Series on harmonization of regulatory oversight in biotechnology No.27. JT00147699
10. European Commission (2006) The common catalogue of varieties of agricultural plant species. Off J Eur Union C 68A/01
11. M Hernandez M Duplan G Berthier M Vaïtilingom W Hauser R Freyer M Pla Y Bertheau 2004 J Agric Food Chem 52 4632 10.1021/jf049789d 1:CAS:528:DC%2BD2cXlsFKlsLk%3D
12. Taverniers I (2005) Development and implementation of strategies for GMO quantification in an evolving European context. PhD thesis. University of Ghent, ISBN 90-5989-049-3, p 346
13. H Kuribara Y Shindo T Matsuoka K Takubo S Futo N Aoki T Hirao H Akiyama Y Goda M Toyoda A Hino 2002 J AOAC Int 85 1077 1:CAS:528:DC%2BD38XnsFekt7k%3D
14. Y Shindo H Kuribara T Matsuoka S Futo C Sawada J Shono H Akiyama Y Goda M Toyoda A Hino 2002 J AOAC Int 85 1119 1:CAS:528:DC%2BD38XnsFektLw%3D
15. T Yoshimura H Kuribara T Matsuoka T Kodama M Iida T Watanabe H Akiyama T Maitani S Furui A Hino 2005 J Agric Food Chem 53 2052 10.1021/jf048327x 1:CAS:528:DC%2BD2MXhslGht7c%3D (Pubitemid 40395773)
16. S Brunner K Fengler M Morgante S Tingey A Rafalski 2005 The Plant Cell 17 343 10.1105/tpc.104.025627 1:CAS:528:DC%2BD2MXhsFKru7k%3D (Pubitemid 41672960)
17. SJ Emrich L Li T Wen M Yandeau-Nelson Y Fu L Guo H Chou S Aluru D Ashlock P Schnable 2007 Genetics 175 429 10.1534/genetics.106.064006 1:CAS:528:DC%2BD2sXjs1Wluro%3D (Pubitemid 46168583)
18. K Liu M Goodman S Muse JS Smith E Buckler J Doebley 2003 Genetics 165 2117 1:CAS:528:DC%2BD2cXnvFOltA%3D%3D
19. D Bhattramakki M Dolan M Hanafey R Wineland D Vaske J Register III S Tingey A Rafalski 2002 Plant Mol Biol 48 539 10.1023/A:1014841612043 1:CAS:528:DC%2BD38XjsFWrtrw%3D (Pubitemid 34415970)
20. M Tenaillon M Sawkins L Anderson S Stack J Doebley B Gaut 2002 Genetics 162 1401 1:CAS:528:DC%2BD38XpslCisrs%3D
21. W Broothaerts P Corbisier H Schimmel S Trapmann S Vincent H Emons 2008 J Agric Food Chem 56 8825 10.1021/jf801636d 1:CAS:528:DC%2BD1cXhtVOhtLrP
22. D Bru D Martin-Laurent L Philippot 2008 Appl Environ Microbiol 74 1660 10.1128/AEM.02403-07 1:CAS:528:DC%2BD1cXjt1aku70%3D (Pubitemid 351358467)
23. Ghedira R, Papazova N, Vuylsteke M, Ruttink T, Taverniers I, De Loose M (2009) Assessment of primer/template mismatch effects on real-time PCR amplification of target taxa for GMO quantification. J Agric Food Chem 57(20):9370
24. D Zhang A Corlet S Fouilloux 2008 Transgenic Res 17 393 10.1007/s11248-007-9114-y (Pubitemid 351579733)
25. Rozen S, Skaletsky HJ (2000) In: Krawetz S, Misener S (eds) Molecular biology. Humana Press, Totowa, p 365
26. K Arumuganathan ED Earle 1991 Nuclear DNA content of some important plant species Plant Mol Biol Rep 9 208 10.1007/BF02672069 1:CAS:528: DyaK38XhslSjurY%3D
27. Vandesompele J, De Preter K, Pattyn P, Poppe B, Van Roy N, De Paepe A, Speleman F (2002) Genome Biol 3: research0034.1-0034.11. Available from http://genomebiology.com/2002/3/7/research/0034.1
28. N Papazova R Ghedira S Van Glabeke A Bategi P Windels I Taverniers I Roldan-Ruiz E Van Bockstaele A Milcamps G Van den Eede A Depicker M De Loose 2008 Plant Cell Rep 27 749 10.1007/s00299-007-0495-4 1:CAS:528: DC%2BD1cXjsVCltrk%3D
29. M Sachs E Dennis W Gerlach W Peacock 1986 Genetics 113 449 1:CAS:528:DyaL28XksFGmtro%3D
30. Ceddia M, Rodriguez-Cerezo E (2008) A descriptive analysis of conventional, organic and GM crop and certified seed production in the EU. EUR 23443 EN
31. Y Vigouroux S Mitchell Y Matsuoka M Hamblin S Kresovich JSC Smith J Jaqueth OS Smith J Doebley 2005 Genetics 169 1617 10.1534/genetics.104.032086 1:CAS:528:DC%2BD2MXktFGjtrc%3D (Pubitemid 40547469)
32. Moor D (2005) Reliability of the Maize and Soybean Endogenous Reference Genes used in GMO Analysis if Food. PhD thesis, University of Bern, p 128
33. M Chaouachi S Giancola M Romaniuk V Laval Y Bertheau D Brunel 2007 J Agric Food Chem 55 8003 10.1021/jf071429d 1:CAS:528:DC%2BD2sXhtVWhtbzL