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Volumn 397, Issue 1, 2010, Pages 25-41

The principle of exhaustiveness versus the principle of parsimony: A new approach for the identification of biomarkers from proteomic spot volume datasets based on principal component analysis

Author keywords

2D gel electrophoresis; Biomarker discovery; Classification methods; Exhaustiveness; Ranking PCA; Variable selection

Indexed keywords

2D GEL ELECTROPHORESIS; BIO-MARKER DISCOVERY; CLASSIFICATION METHODS; CLASSIFICATION PERFORMANCE; DATA SETS; LEADING RESEARCH AREAS; MULTIVARIATE METHODS; NEW APPROACHES; PROTEOMICS; VARIABLE SELECTION; VOLUME DATA SETS;

EID: 77951255410     PISSN: 16182642     EISSN: 16182650     Source Type: Journal    
DOI: 10.1007/s00216-009-3390-8     Document Type: Conference Paper
Times cited : (24)

References (15)
  • 1
    • 77951257405 scopus 로고    scopus 로고
    • U.S. Human Genome Project (Department of Energy and the National Institutes of Health of USA)
    • U.S. Human Genome Project (Department of Energy and the National Institutes of Health of USA). http://www.ornl.gov/sci/techresources/Human- Genome/home.shtml
  • 2
    • 0035289178 scopus 로고    scopus 로고
    • Validation and development of fluorescence two-dimensional differential gel electrophoresis proteomics technology
    • R Tonge J Shaw B Middleton R Rowlinson S Rayner J Young F Pognan E Hawkins I Currie M Davison 2001 Validation and development of fluorescence two-dimensional differential gel electrophoresis proteomics technology Proteomics 1 3 377 396 10.1002/1615-9861(200103)1:3<377::AID-PROT377>3.0. CO;2-6 1:CAS:528:DC%2BD3MXivVCgurY%3D (Pubitemid 33585112)
    • (2001) Proteomics , vol.1 , Issue.3 , pp. 377-396
    • Tonge, R.P.1    Shaw, J.2    Middleton, B.3    Rowlinson, R.4    Rayner, S.5    Young, J.6    Pognan, F.7    Hawkins, E.8    Currie, I.9    Davison, M.10
  • 3
    • 67049110243 scopus 로고    scopus 로고
    • The association of 83 plasma proteins with CHD mortality, BMI, HDL-, and total-cholesterol in men: Applying multivariate statistics to identify proteins with prognostic value and biological relevance
    • 10.1021/pr8006182 1:CAS:528:DC%2BD1MXlt12mtrY%3D
    • AG Heidema U Thissen JMA Boer FG Bouwman EJM Feskens ECM Mariman 2009 The association of 83 plasma proteins with CHD mortality, BMI, HDL-, and total-cholesterol in men: applying multivariate statistics to identify proteins with prognostic value and biological relevance J Prot Res 8 6 2640 2649 10.1021/pr8006182 1:CAS:528:DC%2BD1MXlt12mtrY%3D
    • (2009) J Prot Res , vol.8 , Issue.6 , pp. 2640-2649
    • Heidema, A.G.1    Thissen, U.2    Boer, J.M.A.3    Bouwman, F.G.4    Feskens, E.J.M.5    Mariman, E.C.M.6
  • 5
    • 33646227179 scopus 로고    scopus 로고
    • Methods of quantitative proteomics and their application to plant organelle characterization
    • 10.1093/jxb/erj141 1:CAS:528:DC%2BD28XjslKku70%3D
    • KS Lilley P Dupree 2006 Methods of quantitative proteomics and their application to plant organelle characterization J Exper Botany 57 7 1493 1499 10.1093/jxb/erj141 1:CAS:528:DC%2BD28XjslKku70%3D
    • (2006) J Exper Botany , vol.57 , Issue.7 , pp. 1493-1499
    • Lilley, K.S.1    Dupree, P.2
  • 6
    • 51649103318 scopus 로고    scopus 로고
    • Evaluation of the variables characterized by significant discriminating power in the application of SIMCA classification method to proteomic studies
    • 10.1021/pr700719a 1:CAS:528:DC%2BD1cXntVGmsb0%3D
    • E Marengo E Robotti M Bobba PG Righetti 2008 Evaluation of the variables characterized by significant discriminating power in the application of SIMCA classification method to proteomic studies J Prot Res 7 7 2789 2796 10.1021/pr700719a 1:CAS:528:DC%2BD1cXntVGmsb0%3D
    • (2008) J Prot Res , vol.7 , Issue.7 , pp. 2789-2796
    • Marengo, E.1    Robotti, E.2    Bobba, M.3    Righetti, P.G.4
  • 7
    • 2942549042 scopus 로고    scopus 로고
    • Study of proteomic changes associated with healthy and tumoral murine samples in neuroblastoma by principal component analysis and classification methods
    • DOI 10.1016/j.cccn.2004.02.027, PII S0009898104000956
    • E Marengo E Robotti PG Righetti N Campostrini J Pascali M Ponzoni M Hamdan H Astner 2004 Study of proteomic changes associated with healthy and tumoral murine samples in neuroblastoma by principal component analysis and classification methods Clin Chim Acta 345 1-2 55 67 10.1016/j.cccn.2004.02.027 1:CAS:528:DC%2BD2cXkvVKlu7c%3D (Pubitemid 38749172)
    • (2004) Clinica Chimica Acta , vol.345 , Issue.1-2 , pp. 55-67
    • Marengo, E.1    Robotti, E.2    Righetti, P.G.3    Campostrini, N.4    Pascali, J.5    Ponzoni, M.6    Hamdan, M.7    Astner, H.8
  • 8
    • 13244258397 scopus 로고    scopus 로고
    • Application of partial least squares discriminant analysis to two-dimensional difference gel studies in expression proteomics
    • DOI 10.1002/pmic.200400881
    • NA Karp JL Griffin KL Lilley 2005 Application of partial least squares discriminant analysis to two-dimensional difference gel studies in expression proteomics Proteomics 5 1 81 90 10.1002/pmic.200400881 1:CAS:528: DC%2BD2MXhtleisrg%3D (Pubitemid 40189640)
    • (2005) Proteomics , vol.5 , Issue.1 , pp. 81-90
    • Karp, N.A.1    Griffin, J.L.2    Lilley, K.S.3
  • 9
    • 0027232319 scopus 로고
    • The parsimony principle applied to multivariate calibration
    • DOI 10.1016/0003-2670(93)80430-S
    • MB Seasholtz B Kowalski 1993 The parsimony principle applied to multivariate calibration Anal Chim Acta 277 165 10.1016/0003-2670(93)80430-S 1:CAS:528:DyaK3sXktl2lu7c%3D (Pubitemid 23157995)
    • (1993) Analytica Chimica Acta , vol.277 , Issue.2 , pp. 165-177
    • Seasholtz, M.B.1    Kowalski, B.2
  • 10
    • 0030853149 scopus 로고    scopus 로고
    • Calibration method choice by comparison of model basis functions to the theoretical instrumental response function
    • DOI 10.1016/S0003-2670(96)00604-6, PII S0003267096006046
    • KS Booksh BR Kowalski 1997 Calibration method choice by comparison of model basis functions to the theoretical instrumental response function Anal Chim Acta 348 1-3 1 9 10.1016/S0003-2670(96)00604-6 1:CAS:528:DyaK2sXlsVWhtbs%3D (Pubitemid 27397410)
    • (1997) Analytica Chimica Acta , vol.348 , Issue.1-3 , pp. 1-9
    • Booksh, K.S.1    Kowalski, B.R.2
  • 11
    • 33744514341 scopus 로고    scopus 로고
    • Parsimonious calibration models for near-infrared spectroscopy using wavelets and scaling functions
    • DOI 10.1016/j.chemolab.2005.12.007, PII S0169743906000025
    • CE Gributs DH Burns 2006 Parsimonious calibration models for near-infrared spectroscopy using wavelets and scaling functions Chemometr Intell Lab Syst 83 1 44 53 10.1016/j.chemolab.2005.12.007 1:CAS:528: DC%2BD28XltlaqsL0%3D (Pubitemid 43815573)
    • (2006) Chemometrics and Intelligent Laboratory Systems , vol.83 , Issue.1 , pp. 44-53
    • Gributs, C.E.W.1    Burns, D.H.2
  • 12
    • 0037117520 scopus 로고    scopus 로고
    • William of Occam and Occam's razor
    • VIII Lo Re LM Bellini 2002 William of Occam and Occam's razor Annals Int Med 136 8 634 635
    • (2002) Annals Int Med , vol.136 , Issue.8 , pp. 634-635
    • Re Viii, L.1    Bellini, L.M.2
  • 15
    • 39849109809 scopus 로고    scopus 로고
    • Application of partial least squares discriminant analysis and variable selection procedures: A 2D-PAGE Proteomic-Based Study
    • 10.1007/s00216-008-1837-y 1:CAS:528:DC%2BD1cXisVenurw%3D
    • E Marengo E Robotti M Bobba A Milli N Campostrini SC Righetti D Cecconi PG Righetti 2008 Application of partial least squares discriminant analysis and variable selection procedures: a 2D-PAGE Proteomic-Based Study Anal Bioanal Chem 390 1327 1342 10.1007/s00216-008-1837-y 1:CAS:528:DC%2BD1cXisVenurw%3D
    • (2008) Anal Bioanal Chem , vol.390 , pp. 1327-1342
    • Marengo, E.1    Robotti, E.2    Bobba, M.3    Milli, A.4    Campostrini, N.5    Righetti, S.C.6    Cecconi, D.7    Righetti, P.G.8


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