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Volumn 396, Issue 8, 2010, Pages 2937-2941

A hydrophilic interaction ultraperformance liquid chromatography (HILIC-UPLC) method for genomic DNA methylation assessment by UV detection

Author keywords

1.7 m ethylene bridged hybrid (BEH) particle; DNA methylation; Hydrophilic interaction chromatography (HILIC); Ultraperformance liquid chromatography (UPLC)

Indexed keywords

AMMONIUM ACETATE; DETERMINATION COEFFICIENTS; DNA METHYLATION; ETHYLENE-BRIDGED; GENOMIC DNA; HYBRID PARTICLES; HYDROPHILIC INTERACTION; HYDROPHILIC INTERACTION CHROMATOGRAPHY; ISOCRATIC ELUTION; LIMIT OF DETECTION; LIMIT OF QUANTIFICATIONS; METHYLCYTOSINE; MOBILE PHASE; PACKED COLUMN; ULTRAPERFORMANCE LIQUID CHROMATOGRAPHY; UV DETECTION;

EID: 77951233523     PISSN: 16182642     EISSN: 16182650     Source Type: Journal    
DOI: 10.1007/s00216-010-3565-3     Document Type: Article
Times cited : (17)

References (23)
  • 1
    • 0042386500 scopus 로고    scopus 로고
    • DNA methylation analysis techniques
    • DOI 10.1023/A:1025103319328
    • C Dahl P Guldberg 2003 DNA methylation analysis techniques Biogerontology 4 233 250 10.1023/A:1025103319328 1:CAS:528:DC%2BD3sXmt1agt7c%3D (Pubitemid 37098463)
    • (2003) Biogerontology , vol.4 , Issue.4 , pp. 233-250
    • Dahl, C.1    Guldberg, P.2
  • 2
    • 0029036310 scopus 로고
    • CpNpG methylation in mammalian cells
    • 10.1038/ng0595-20 1:CAS:528:DyaK2MXlsVymsbk%3D
    • SJ Clark J Harrison M Frommer 1995 CpNpG methylation in mammalian cells Nat Genet 10 20 27 10.1038/ng0595-20 1:CAS:528:DyaK2MXlsVymsbk%3D
    • (1995) Nat Genet , vol.10 , pp. 20-27
    • Clark, S.J.1    Harrison, J.2    Frommer, M.3
  • 3
    • 0033809467 scopus 로고    scopus 로고
    • Evidence that cytosine residues within 5′-CCTGG-3′ pentanucleotides can be methylated in human DNA independently of the methylating system that modifies 5′-CG-3′ dinucleotides
    • 10.1089/104454900439755 1:CAS:528:DC%2BD3cXntlOru7o%3D
    • M Franchina PH Kay 2000 Evidence that cytosine residues within 5′-CCTGG-3′ pentanucleotides can be methylated in human DNA independently of the methylating system that modifies 5′-CG-3′ dinucleotides DNA Cell Biol 19 521 526 10.1089/104454900439755 1:CAS:528:DC%2BD3cXntlOru7o%3D
    • (2000) DNA Cell Biol , vol.19 , pp. 521-526
    • Franchina, M.1    Kay, P.H.2
  • 4
    • 2942594082 scopus 로고    scopus 로고
    • Cytosine methylation and CpG, TpG (CpA) and TpA frequencies
    • DOI 10.1016/j.gene.2004.02.043, PII S0378111904000836
    • K Jabbari G Bernardi 2004 Cytosine methylation and CpG, TpG (CpA) and TpA frequencies Gene 333 143 149 10.1016/j.gene.2004.02.043 1:CAS:528: DC%2BD2cXksFOmtrc%3D (Pubitemid 38737360)
    • (2004) Gene , vol.333 , Issue.1-2 , pp. 143-149
    • Jabbari, K.1    Bernardi, G.2
  • 6
    • 0033615717 scopus 로고    scopus 로고
    • DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development
    • DOI 10.1016/S0092-8674(00)81656-6
    • M Okano DW Bell DA Haber E Li 1999 DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development Cell 99 247 257 10.1016/S0092-8674(00)81656-6 1:CAS:528:DyaK1MXnt1Gqsrc%3D (Pubitemid 29519904)
    • (1999) Cell , vol.99 , Issue.3 , pp. 247-257
    • Okano, M.1    Bell, D.W.2    Haber, D.A.3    Li, E.4
  • 7
    • 0033547330 scopus 로고    scopus 로고
    • Chromosome instability and immunodeficiency syndrome caused by mutations in a DNA methyltransferase gene
    • 10.1038/46214 1:CAS:528:DyaK1MXnsVektb8%3D
    • GL Xu TH Bestor D Bourchis CL Hsieh N Tommerup M Bugge M Hulten X Qu JJ Russo E Viegas-Pequignot 1999 Chromosome instability and immunodeficiency syndrome caused by mutations in a DNA methyltransferase gene Nature 402 187 191 10.1038/46214 1:CAS:528:DyaK1MXnsVektb8%3D
    • (1999) Nature , vol.402 , pp. 187-191
    • Xu, G.L.1    Bestor, T.H.2    Bourchis, D.3    Hsieh, C.L.4    Tommerup, N.5    Bugge, M.6    Hulten, M.7    Qu, X.8    Russo, J.J.9    Viegas-Pequignot, E.10
  • 8
    • 0141994824 scopus 로고    scopus 로고
    • Perturbations of chromatin structure in human genetic disease: Recent advances
    • 10.1093/hmg/ddg260
    • WA Bickmore SM van der Maarel 2003 Perturbations of chromatin structure in human genetic disease: recent advances Hum Mol Genet 12 207 213 10.1093/hmg/ddg260
    • (2003) Hum Mol Genet , vol.12 , pp. 207-213
    • Bickmore, W.A.1    Van Der Maarel, S.M.2
  • 9
    • 38449109753 scopus 로고    scopus 로고
    • TLC-based detection of methylated cytosine: Application to aging epigenetics
    • 10.1007/s10522-007-9109-3 1:CAS:528:DC%2BD2sXht1ahur%2FK
    • MZ Barciszewska AM Barciszewska SI Rattan 2007 TLC-based detection of methylated cytosine: application to aging epigenetics Biogerontology 8 673 678 10.1007/s10522-007-9109-3 1:CAS:528:DC%2BD2sXht1ahur%2FK
    • (2007) Biogerontology , vol.8 , pp. 673-678
    • Barciszewska, M.Z.1    Barciszewska, A.M.2    Rattan, S.I.3
  • 10
    • 11144270416 scopus 로고    scopus 로고
    • Measurement of DNA methylation using stable isotope dilution and gas chromatography-mass spectrometry
    • DOI 10.1016/j.ab.2004.09.034, PII S0003269704007705
    • AS Romerio G Fiorillo I Terrazzi P Senesi G Testolin A Battezzati 2005 Measurement of DNA methylation using stable isotope dilution and gas chromatography-mass spectrometry Anal Biochem 336 158 163 10.1016/j.ab.2004.09. 034 (Pubitemid 40038012)
    • (2005) Analytical Biochemistry , vol.336 , Issue.2 , pp. 158-163
    • Romerio, A.S.1    Fiorillo, G.2    Terruzzi, I.3    Senesi, P.4    Testolin, G.5    Battezzati, A.6
  • 12
    • 0032940772 scopus 로고    scopus 로고
    • Capillary electrochromatography with novel stationary phases: II. Studies of the retention behavior of nucleosides and bases on capillaries packed with octadecyl-sulfonated-silica microparticles
    • DOI 10.1002/(SICI)1522-2683(19990101)20:1<31::AID-ELPS31>3.0.CO;2-M
    • M Zhang Z El Rassi 1999 Capillary electrochromatography with novel stationary phases: II. Studies of the retention behavior of nucleosides and bases on capillaries packed with octadecyl-sulfonated-silica microparticles Electrophoresis 20 31 36 10.1002/(SICI)1522-2683(19990101)20:1<31::AID- ELPS31>3.0.CO;2-M (Pubitemid 29071984)
    • (1999) Electrophoresis , vol.20 , Issue.1 , pp. 31-36
    • Zhang, M.1    El Rassi, Z.2
  • 13
    • 0033665001 scopus 로고    scopus 로고
    • Immunohistochemical evaluation of global DNA methylation: Comparison with in vitro radiolabeled methyl incorporation assay
    • 10.3109/10520290009085128 1:CAS:528:DC%2BD3MXislamtg%3D%3D
    • CJ Piyathilake GL Johanning AR Frost MA Whiteside U Manne WE Grizzle DC Heimburger A Niveleau 2000 Immunohistochemical evaluation of global DNA methylation: comparison with in vitro radiolabeled methyl incorporation assay Biotech Histochem 75 251 258 10.3109/10520290009085128 1:CAS:528: DC%2BD3MXislamtg%3D%3D
    • (2000) Biotech Histochem , vol.75 , pp. 251-258
    • Piyathilake, C.J.1    Johanning, G.L.2    Frost, A.R.3    Whiteside, M.A.4    Manne, U.5    Grizzle, W.E.6    Heimburger, D.C.7    Niveleau, A.8
  • 14
    • 34447282194 scopus 로고    scopus 로고
    • Global DNA methylation measured by liquid chromatography-tandem mass spectrometry: Analytical technique, reference values and determinants in healthy subjects
    • DOI 10.1515/CCLM.2007.137
    • RM Kok DE Smith R Barto AM Spijkerman T Teerlink HJ Gellekink C Jakobs YM Smulders 2007 Global DNA methylation measured by liquid chromatography-tandem mass spectrometry: analytical technique, reference values and determinants in healthy subjects Clin Chem Lab Med 45 903 911 10.1515/CCLM.2007.137 1:CAS:528:DC%2BD2sXptV2hsrY%3D (Pubitemid 47041882)
    • (2007) Clinical Chemistry and Laboratory Medicine , vol.45 , Issue.7 , pp. 903-911
    • Kok, R.M.1    Smith, D.E.C.2    Barto, R.3    Spijkerman, A.M.W.4    Teerlink, T.5    Gellekink, H.J.6    Jakobs, C.7    Smulders, Y.M.8
  • 15
    • 0016604807 scopus 로고
    • Liquid chromatography of saccharides
    • 10.1016/S0021-9673(01)81096-7 1:CAS:528:DyaE2MXht1Krt7Y%3D
    • JC Linden CL Lawhead 1975 Liquid chromatography of saccharides J Chromatogr A 105 125 133 10.1016/S0021-9673(01)81096-7 1:CAS:528: DyaE2MXht1Krt7Y%3D
    • (1975) J Chromatogr A , vol.105 , pp. 125-133
    • Linden, J.C.1    Lawhead, C.L.2
  • 16
    • 0025173758 scopus 로고
    • Hydrophilic-interaction chromatography for the separation of peptides, nucleic acids and other polar compounds
    • DOI 10.1016/S0021-9673(00)96972-3
    • AJ Alpert 1990 Hydrophilic-interaction chromatography for the separation of peptides, nucleic acids and other polar compounds J Chromatogr A 499 177 196 10.1016/S0021-9673(00)96972-3 1:CAS:528:DyaK3cXkt1Shur8%3D (Pubitemid 20044236)
    • (1990) Journal of Chromatography , vol.499 , pp. 177-196
    • Alpert, A.J.1
  • 17
    • 33748471966 scopus 로고    scopus 로고
    • Hydrophilic interaction chromatography
    • DOI 10.1002/jssc.200600199
    • O Hemstrom K Irgum 2006 Hydrophilic interaction chromatography J Sep Sci 29 1784 1821 10.1002/jssc.200600199 (Pubitemid 44348484)
    • (2006) Journal of Separation Science , vol.29 , Issue.12 , pp. 1784-1821
    • Hemstrom, P.1    Irgum, K.2
  • 18
    • 23044451815 scopus 로고    scopus 로고
    • UPLC: Ultra-performance liquid chromatography
    • J Sherma 2005 UPLC: ultra-performance liquid chromatography J AOAC Int 88 63 67
    • (2005) J AOAC Int , vol.88 , pp. 63-67
    • Sherma, J.1
  • 19
    • 0017158602 scopus 로고
    • Analysis of 5-methylcytosine in DNA. I. Mass spectrometry
    • 10.1016/0003-2697(76)90570-4 1:CAS:528:DyaE28XktFKls74%3D
    • J Deutsch A Razin J Sedat 1976 Analysis of 5-methylcytosine in DNA. I. Mass spectrometry Anal Biochem 72 586 592 10.1016/0003-2697(76)90570-4 1:CAS:528:DyaE28XktFKls74%3D
    • (1976) Anal Biochem , vol.72 , pp. 586-592
    • Deutsch, J.1    Razin, A.2    Sedat, J.3
  • 20
    • 0023583617 scopus 로고
    • Determination of 5-methylcytosine by acid hydrolysis of DNA with hydrofluoric acid
    • 10.1016/0003-2697(87)90175-8 1:CAS:528:DyaL1cXjtVal
    • J Catania BC Keenan GP Margison DS Fairweather 1987 Determination of 5-methylcytosine by acid hydrolysis of DNA with hydrofluoric acid Anal Biochem 167 347 351 10.1016/0003-2697(87)90175-8 1:CAS:528:DyaL1cXjtVal
    • (1987) Anal Biochem , vol.167 , pp. 347-351
    • Catania, J.1    Keenan, B.C.2    Margison, G.P.3    Fairweather, D.S.4
  • 21
    • 0019202657 scopus 로고
    • Quantitative reversed-phase high performance liquid chromatographic determination of major and modified deoxyribonucleosides in DNA
    • 10.1093/nar/8.20.4763 1:CAS:528:DyaL3MXktlCrtQ%3D%3D
    • KC Kuo RA McCune CW Gehrke R Midgett M Ehrlich 1980 Quantitative reversed-phase high performance liquid chromatographic determination of major and modified deoxyribonucleosides in DNA Nucleic Acids Res 8 4763 4776 10.1093/nar/8.20.4763 1:CAS:528:DyaL3MXktlCrtQ%3D%3D
    • (1980) Nucleic Acids Res , vol.8 , pp. 4763-4776
    • Kuo, K.C.1    McCune, R.A.2    Gehrke, C.W.3    Midgett, R.4    Ehrlich, M.5
  • 22
    • 84908219488 scopus 로고
    • Statistical methods for assessing agreement between two methods of clinical measurement
    • JM Bland DG Altman 1986 Statistical methods for assessing agreement between two methods of clinical measurement Lancet 8476 307 310
    • (1986) Lancet , vol.8476 , pp. 307-310
    • Bland, J.M.1    Altman, D.G.2
  • 23
    • 3042854223 scopus 로고    scopus 로고
    • Quantitative analysis of DNA methylation in chronic lymphocytic leukemia patients
    • 10.1002/elps.200305830 1:CAS:528:DC%2BD2cXlt1Ohsr0%3D
    • F Lyko D Stach A Brenner S Stilgenbauer H Dohner M Wirtz M Wiessler OJ Schmitz 2004 Quantitative analysis of DNA methylation in chronic lymphocytic leukemia patients Electrophoresis 25 1530 1535 10.1002/elps.200305830 1:CAS:528:DC%2BD2cXlt1Ohsr0%3D
    • (2004) Electrophoresis , vol.25 , pp. 1530-1535
    • Lyko, F.1    Stach, D.2    Brenner, A.3    Stilgenbauer, S.4    Dohner, H.5    Wirtz, M.6    Wiessler, M.7    Schmitz, O.J.8


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