The mosaic of KIR haplotypes in rhesus macaques

Immunogenetics

Volumn 62, Issue 5, 2010, Pages 295-306

  Blokhuis, Jeroen H ^a   Van Der Wiel, Marit K ^a   Doxiadis, Gaby G M ^a   Bontrop, Ronald E ^a,b  

^a BIOMEDICAL PRIMATE RESEARCH CENTRE   (Netherlands)

^b UTRECHT UNIVERSITY   (Netherlands)

Author keywords

Comparative immunology; Evolution; KIR; MHC; Natural killer cells

Indexed keywords

KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 2DL4; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 2DL5; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 3DL2;

ANIMAL CELL; ARTICLE; CONTROLLED STUDY; GENETIC RECOMBINATION; GENOTYPE; HAPLOTYPE; IMMUNOGENETICS; MACACA; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; ALTERNATIVE RNA SPLICING; ANIMAL; GENE DOSAGE; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GENETICS; IMMUNOLOGY;

ANIMALIA; MACACA MULATTA;

ALTERNATIVE SPLICING; ANIMALS; GENE DOSAGE; GENETIC VARIATION; HAPLOTYPES; MACACA MULATTA; POLYMORPHISM, GENETIC; RECEPTORS, KIR;

EID: 77951225802     PISSN: 00937711     EISSN: 14321211     Source Type: Journal    
DOI: 10.1007/s00251-010-0434-3     Document Type: Article

References (47)

1. BN Bimber AJ Moreland RW Wiseman AL Hughes DH O'Connor 2008 Complete characterization of killer Ig-like receptor (KIR) haplotypes in Mauritian cynomolgus macaques: novel insights into nonhuman primate KIR gene content and organization J Immunol 181 6301 6308 18941221 1:CAS:528:DC%2BD1cXht1KrtrbN
2. JH Blokhuis GG Doxiadis RE Bontrop 2009 A splice site mutation converts an inhibitory killer cell Ig-like receptor into an activating one Mol Immunol 46 640 648 10.1016/j.molimm.2008.08.270 19019442 1:CAS:528:DC%2BD1MXpsFOmsg%3D%3D
3. JH Blokhuis MK van der Wiel GG Doxiadis RE Bontrop 2009 Evidence for balancing selection acting on KIR2DL4 genotypes in rhesus macaques of Indian origin Immunogenetics 61 503 512 10.1007/s00251-009-0379-6 19506858 1:CAS:528:DC%2BD1MXotF2nurY%3D
4. RE Bontrop DI Watkins 2005 MHC polymorphism: AIDS susceptibility in non-human primates Trends Immunol 26 227 233 10.1016/j.it.2005.02.003 15797514 1:CAS:528:DC%2BD2MXis1GltLo%3D (Pubitemid 41556861)
5. RE Bontrop N Otting BL Slierendregt JS Lanchbury 1995 Evolution of major histocompatibility complex polymorphisms and T-cell receptor diversity in primates Immunol Rev 143 33 62 10.1111/j.1600-065X.1995.tb00669.x 7558081 1:CAS:528:DyaK2MXlsVCntLk%3D
6. LF Cadavid CM Lun 2009 Lineage-specific diversification of killer cell Ig-like receptors in the owl monkey, a new world primate Immunogenetics 61 27 41 10.1007/s00251-008-0342-y 19009288 1:CAS:528:DC%2BD1MXhtlKltb0%3D
7. GG Doxiadis AJ Rouweler NG de Groot A Louwerse N Otting EJ Verschoor RE Bontrop 2006 Extensive sharing of MHC class II alleles between rhesus and cynomolgus macaques Immunogenetics 58 259 268 10.1007/s00251-006-0083-8 16470376 1:CAS:528:DC%2BD28XjvFSns7w%3D (Pubitemid 43673470)
8. N Gomez-Lozano R de Pablo S Puente C Vilches 2003 Recognition of HLA-G by the NK cell receptor KIR2DL4 is not essential for human reproduction Eur J Immunol 33 639 644 10.1002/eji.200323741 12616484 1:CAS:528:DC%2BD3sXisVChsr0%3D (Pubitemid 36367667)
9. LA Guethlein AM Older Aguilar L Abi-Rached P Parham 2007 Evolution of killer cell Ig-like receptor (KIR) genes: definition of an orangutan KIR haplotype reveals expansion of lineage III KIR associated with the emergence of MHC-C J Immunol 179 491 504 17579070 1:CAS:528:DC%2BD2sXmsF2gsbg%3D
10. KL Hershberger R Shyam A Miura NL Letvin 2001 Diversity of the killer cell Ig-like receptors of rhesus monkeys J Immunol 166 4380 4390 11254692 1:CAS:528:DC%2BD3MXit1Oksbc%3D
11. DT Jones WR Taylor JM Thornton 1992 The rapid generation of mutation data matrices from protein sequences Comput Appl Biosci 8 275 282 1633570 1:CAS:528:DyaK38Xlt1Okt7w%3D
12. JA Karl RW Wiseman KJ Campbell AJ Blasky AL Hughes B Ferguson DS Read DH O'Connor 2008 Identification of MHC class I sequences in Chinese-origin rhesus macaques Immunogenetics 60 37 46 10.1007/s00251-007-0267-x 18097659 1:CAS:528:DC%2BD1cXotlKruw%3D%3D
13. J Kelley L Walter J Trowsdale 2005 Comparative genomics of natural killer cell receptor gene clusters PLoS Genet 1 129 139 10.1371/journal.pgen.0010027 16132082 1:CAS:528:DC%2BD2MXps1Grt78%3D
14. SI Khakoo M Carrington 2006 KIR and disease: a model system or system of models? Immunol Rev 214 186 201 10.1111/j.1600-065X.2006.00459.x 17100885 1:CAS:528:DC%2BD28XhtlClsrzM (Pubitemid 44707911)
15. SI Khakoo R Rajalingam BP Shum K Weidenbach L Flodin DG Muir F Canavez SL Cooper NM Valiante LL Lanier P Parham 2000 Rapid evolution of NK cell receptor systems demonstrated by comparison of chimpanzees and humans Immunity 12 687 698 10.1016/S1074-7613(00)80219-8 10894168 1:CAS:528:DC%2BD3cXkslagtbc%3D
16. SJ Knechtle WJ Burlingham 2004 Metastable tolerance in nonhuman primates and humans Transplantation 77 936 939 10.1097/01.TP.0000117777.70887.3C 15077042 (Pubitemid 38436839)
17. Kruse PH, Rosner C, Walter L (2010) Characterization of rhesus macaque KIR genotypes and haplotypes. Immunogenetics doi: 10.1007/s00251-010-0433-4
18. LL Lanier 1998 NK cell receptors Annu Rev Immunol 16 359 393 10.1146/annurev.immunol.16.1.359 9597134 1:CAS:528:DyaK1cXislynt7s%3D (Pubitemid 28183369)
19. SG Marsh P Parham B Dupont DE Geraghty J Trowsdale D Middleton C Vilches M Carrington C Witt LA Guethlein H Shilling CA Garcia KC Hsu H Wain 2003 Killer-cell immunoglobulin-like receptor (KIR) nomenclature report, 2002 Immunogenetics 55 220 226 10.1007/s00251-003-0571-z 12838378 (Pubitemid 36960515)
20. SG Marsh ED Albert WF Bodmer RE Bontrop B Dupont HA Erlich DE Geraghty JA Hansen CK Hurley B Mach WR Mayr P Parham EW Petersdorf T Sasazuki GM Schreuder JL Strominger A Svejgaard PI Terasaki J Trowsdale 2005 Nomenclature for factors of the HLA system, 2004 Hum Immunol 66 571 636 10.1016/j.humimm.2005.02.002 15935895 1:CAS:528:DC%2BD2MXltVeisb4%3D (Pubitemid 40797556)
21. MP Martin RM Single MJ Wilson J Trowsdale M Carrington 2008 KIR haplotypes defined by segregation analysis in 59 Centre d'Etude Polymorphisme Humain (CEPH) families Immunogenetics 60 767 774 10.1007/s00251-008-0334-y 18972110 1:CAS:528:DC%2BD1cXhsVWhsrnN
22. LD Maxwell A Wallace D Middleton MD Curran 2002 A common KIR2DS4 deletion variant in the human that predicts a soluble KIR molecule analogous to the KIR1D molecule observed in the rhesus monkey Tissue Antigens 60 254 258 10.1034/j.1399-0039.2002.600307.x 12445308 1:CAS:528:DC%2BD38Xps1Kltbs%3D (Pubitemid 35398828)
23. A Moretta C Bottino MC Mingari R Biassoni L Moretta 2002 What is a natural killer cell? Nat Immunol 3 6 8 10.1038/ni0102-6 11753399 1:CAS:528:DC%2BD38XktlCmsg%3D%3D (Pubitemid 34065607)
24. PJ Norman L Abi-Rached K Gendzekhadze JA Hammond AK Moesta D Sharma T Graef KL McQueen LA Guethlein CV Carrington D Chandanayingyong YH Chang C Crespi G Saruhan-Direskeneli K Hameed G Kamkamidze KA Koram Z Layrisse N Matamoros J Mila, et al. 2009 Meiotic recombination generates rich diversity in NK cell receptor genes, alleles, and haplotypes Genome Res 19 757 769 10.1101/gr.085738.108 19411600 1:CAS:528:DC%2BD1MXlsFykuro%3D
25. N Otting RE Bontrop 1993 Characterization of the rhesus macaque (Macaca mulatta) equivalent of HLA-F Immunogenetics 38 141 145 10.1007/BF00190901 8482576 1:CAS:528:DyaK3sXmtFyku7g%3D
26. N Otting CM Heijmans RC Noort NG de Groot GG Doxiadis JJ van Rood DI Watkins RE Bontrop 2005 Unparalleled complexity of the MHC class I region in rhesus macaques Proc Natl Acad Sci USA 102 1626 1631 10.1073/pnas.0409084102 15665097 1:CAS:528:DC%2BD2MXhs1Kltbs%3D (Pubitemid 40209218)
27. N Otting AJ de Vos-Rouweler CM Heijmans NG de Groot GG Doxiadis RE Bontrop 2007 MHC class I A region diversity and polymorphism in macaque species Immunogenetics 59 367 375 10.1007/s00251-007-0201-2 17334754 1:CAS:528:DC%2BD2sXjslOntbs%3D (Pubitemid 46537502)
28. N Otting CM Heijmans M van der Wiel NG de Groot GG Doxiadis RE Bontrop 2008 A snapshot of the Mamu-B genes and their allelic repertoire in rhesus macaques of Chinese origin Immunogenetics 60 507 514 10.1007/s00251-008-0311-5 18618105
29. P Parham 2005 MHC class I molecules and KIRs in human history, health and survival Nat Rev Immunol 5 201 214 10.1038/nri1570 15719024 1:CAS:528:DC%2BD2MXhslSju78%3D (Pubitemid 40364822)
30. R Rajalingam P Parham L Abi-Rached 2004 Domain shuffling has been the main mechanism forming new hominoid killer cell Ig-like receptors J Immunol 172 356 369 14688344 1:CAS:528:DC%2BD3sXpvFehur0%3D
31. R Rajalingam Z Du A Meenagh L Luo VJ Kavitha R Pavithra-Arulvani A Vidhyalakshmi SK Sharma I Balazs EF Reed RM Pitchappan D Middleton 2008 Distinct diversity of KIR genes in three southern Indian populations: comparison with world populations revealed a link between KIR gene content and pre-historic human migrations Immunogenetics 60 207 217 10.1007/s00251-008-0286-2 18369612 1:CAS:528:DC%2BD1cXlt1Crtbs%3D
32. J Robinson K Mistry H McWilliam R Lopez SG Marsh 2009 IPD-the immuno polymorphism database Nucleic Acids Res 38 D863 D869 10.1093/nar/gkp879 19875415 1:CAS:528:DC%2BC3cXktlyktQ%3D%3D
33. N Saitou M Nei 1987 The neighbor-joining method: a new method for reconstructing phylogenetic trees Mol Biol Evol 4 406 425 3447015 1:STN:280:DyaL1c7ovFSjsA%3D%3D
34. JG Sambrook A Bashirova S Palmer S Sims J Trowsdale L Abi-Rached P Parham M Carrington S Beck 2005 Single haplotype analysis demonstrates rapid evolution of the killer immunoglobulin-like receptor (KIR) loci in primates Genome Res 15 25 35 10.1101/gr.2381205 15632087 1:CAS:528:DC%2BD2MXlsVSktA%3D%3D
35. RM Single MP Martin X Gao D Meyer M Yeager JR Kidd KK Kidd M Carrington 2007 Global diversity and evidence for coevolution of KIR and HLA Nat Genet 39 1114 1119 10.1038/ng2077 17694058 1:CAS:528:DC%2BD2sXps12gtLw%3D (Pubitemid 47342436)
36. BL Slierendregt JT van Noort RM Bakas N Otting M Jonker RE Bontrop 1992 Evolutionary stability of transspecies major histocompatibility complex class II DRB lineages in humans and rhesus monkeys Hum Immunol 35 29 39 10.1016/0198-8859(92)90092-2 1478892 1:CAS:528:DyaK3sXhsVGnsLc%3D (Pubitemid 23019543)
37. K Tamura J Dudley M Nei S Kumar 2007 MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0 Mol Biol Evol 24 1596 1599 10.1093/molbev/msm092 17488738 1:CAS:528:DC%2BD2sXpsVGrsL8%3D (Pubitemid 47236692)
38. J Trowsdale A Moffett 2008 NK receptor interactions with MHC class I molecules in pregnancy Semin Immunol 20 317 320 10.1016/j.smim.2008.06.002 18656382 1:CAS:528:DC%2BD1cXhsVCgtr3K
39. M Uhrberg NM Valiante BP Shum HG Shilling K Lienert-Weidenbach B Corliss D Tyan LL Lanier P Parham 1997 Human diversity in killer cell inhibitory receptor genes Immunity 7 753 763 10.1016/S1074-7613(00)80394-5 9430221 1:CAS:528:DyaK1cXjsFShsw%3D%3D (Pubitemid 28064889)
40. M Uhrberg P Parham P Wernet 2002 Definition of gene content for nine common group B haplotypes of the Caucasoid population: KIR haplotypes contain between seven and eleven KIR genes Immunogenetics 54 221 229 10.1007/s00251-002-0463-7 12136333 1:CAS:528:DC%2BD38XltlOmtro%3D (Pubitemid 34824132)
41. MP Vierboom M Jonker RE Bontrop B Hart 2005 Modeling human arthritic diseases in nonhuman primates Arthritis Res Ther 7 145 154 10.1186/ar1773 15987497 1:CAS:528:DC%2BD2MXls1Gjur0%3D (Pubitemid 40936604)
42. C Vilches P Parham 2002 KIR: diverse, rapidly evolving receptors of innate and adaptive immunity Annu Rev Immunol 20 217 251 10.1146/annurev. immunol.20.092501.134942 11861603 1:CAS:528:DC%2BD38XjtlWgt7c%3D (Pubitemid 34293425)
43. MT Vossen EM Westerhout C Soderberg-Naucler EJ Wiertz 2002 Viral immune evasion: a masterpiece of evolution Immunogenetics 54 527 542 10.1007/s00251-002-0493-1 12439615 1:CAS:528:DC%2BD38XoslOqtr4%3D (Pubitemid 35435511)
44. F Williams LD Maxwell IA Halfpenny A Meenagh C Sleator MD Curran D Middleton 2003 Multiple copies of KIR 3DL/S1 and KIR 2DL4 genes identified in a number of individuals Hum Immunol 64 729 732 10.1016/S0198-8859(03)00089-2 12826375 1:CAS:528:DC%2BD3sXkvVCmtbc%3D (Pubitemid 36828504)
45. MJ Wilson M Torkar A Haude S Milne T Jones D Sheer S Beck J Trowsdale 2000 Plasticity in the organization and sequences of human KIR/ILT gene families Proc Natl Acad Sci USA 97 4778 4783 10.1073/pnas.080588597 10781084 1:CAS:528:DC%2BD3cXivFKjtbk%3D (Pubitemid 30238634)
46. CS Witt C Dewing DC Sayer M Uhrberg P Parham FT Christiansen 1999 Population frequencies and putative haplotypes of the killer cell immunoglobulin-like receptor sequences and evidence for recombination Transplantation 68 1784 1789 10.1097/00007890-199912150-00024 10609957 1:CAS:528:DC%2BD3cXlsVKntg%3D%3D
47. M Yawata N Yawata L Abi-Rached P Parham 2002 Variation within the human killer cell immunoglobulin-like receptor (KIR) gene family Crit Rev Immunol 22 463 482 12803322 1:CAS:528:DC%2BD3sXksVGrsr4%3D