Genotyping of White spot syndrome virus (WSSV) geographical isolates from Brazil and comparison to other isolates from the Americas

Diseases of Aquatic Organisms

Volumn 88, Issue 2, 2010, Pages 91-98

  Muller, Isabel C ^a,b   Andrade, Thales P D ^a   Tang Nelson, Kathy F J ^a   Marques, Maria R F ^b   Lightner, Donald V ^a  

^a UNIVERSITY OF ARIZONA   (United States)

^b FEDERAL UNIVERSITY OF SANTA CATARINA   (Brazil)

Author keywords

Genotyping; Litopenaeus vannamei; Variable number tandem repeats; White spot syndrome virus; WSSV

Indexed keywords

CRUSTACEAN; ECONOMIC IMPACT; ENZYME; GENETIC ANALYSIS; GENETIC MARKER; GENOTYPE; MUTATION; PATHOGENICITY; VIRAL DISEASE;

DECAPODA (CRUSTACEA); LITOPENAEUS VANNAMEI; SHRIMP WHITE SPOT SYNDROME VIRUS;

ANIMAL; AQUACULTURE; ARTICLE; BRAZIL; DNA VIRUS INFECTION; GENETICS; GENOTYPE; HONDURAS; MEXICO; NICARAGUA; PENAEIDAE; UNITED STATES; VIROLOGY; WHITE SPOT SYNDROME VIRUS;

ANIMALS; AQUACULTURE; BRAZIL; DNA VIRUS INFECTIONS; GENOTYPE; HONDURAS; MEXICO; NICARAGUA; PENAEIDAE; UNITED STATES; WHITE SPOT SYNDROME VIRUS 1;

EID: 77951209883     PISSN: 01775103     EISSN: 16161580     Source Type: Journal    
DOI: 10.3354/dao02142     Document Type: Article

References (31)

1. Baumgartner WA, Hawke JP, Bowles K, Varner PW, Hasson KW (2009) Primary diagnosis and surveillance of white spot syndrome virus in wild and farmed crawfish (Procambarus clarkii, P. zonangulus) in Louisiana, USA. Dis Aquat Org 85:15-22
2. Benson G (1999) Tandem repeats finder: a program to analyse DNA sequences. Nucleic Acids Res 27:573-580
3. Cai SL, Huang J, Wang CM, Song XL and others (1995) Epidemiological studies on the explosive epidemic disease of prawn in 1993-1994. J Fish China 19:112-117
4. Dieu BTM, Marks H, Siebenga JJ, Goldbach RW, Zuidema D, Duong TP, Vlak JM (2004) Molecular epidemiology of white spot syndrome virus within Vietnam. J Gen Virol 85:3607-3618 (Pubitemid 39591867)
5. Durand S, Lightner DV, Redman RM, Bonami JR (1997) Ultrastructure and morphogenesis of white spot syndrome baculovirus (WSSV). Dis Aquat Org 29:205-211
6. Flegel TW (1997) Major viral diseases of the black tiger prawn (Penaeus monodon) in Thailand. World J Microbiol Biotechnol 13:433-442
7. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT Nucleic Acids Symp Ser 41:95-98
8. He N, Qin Q, Xu X (2005) Differential profile of genes expressed in hemocytes of White Spot Syndrome Virusresistant shrimp (Penaeus japonicus) by combining suppression subtractive hybridization and differential hybridization. Antiviral Res 66:39-45
9. Hoa TT, Hodgson RA, Oanh DT, Phuong NT, Preston NJ, Walker PJ (2005) Genotypic variations in tandem repeat DNA segments between ribonucleotide reductase subunit genes of white spot syndrome virus (WSSV) isolates from Vietnam. In: Diseases in Asian aquaculture V. Fish Health Sect, Asian Fish Soc, Manila, p 339-351
10. INFOFISH (1999) White spot syndrome spreads in Latin America. INFOFISH Int 5:37
11. Inouye K, Miwa S, Oseko N, Nakano H, Kimura T, Momoyama K, Hiraoka M (1994) Mass mortalities of cultured Kuruma shrimp Penaeus japonicus in Japan in 1993: electron microscope evidence of the causative virus. Fish Pathol 29:149-158
12. Lightner DV (2005) Biosecurity in shrimp farming: pathogen exclusion through use of SPF stock and routine surveillance. J World Aquacult Soc 36:229-248
13. Lo CF, Leu JH, Ho CH, Chen CH and others (1996) Detection of baculovirus associated with white spot syndrome (WSBV) in penaeid shrimps using polymerase chain reaction. Dis Aquat Org 25:133-141
14. Lo CF, Hsu HC, Tsai MF, Ho CH, Peng SE, Kou GH, Lightner DV (1999) Specific genomic DNA fragment analysis of different geographical clinical samples of shrimp white spot syndrome virus. Dis Aquat Org 35:175-185
15. Marks H, Goldbach RW, Vlak JM, van Hulten MCW (2004) Genetic variation among isolates of white spot syndrome virus. Arch Virol 149:673-697 (Pubitemid 38459128)
16. Marks H, van Duijse JJ, Zuidema D, van Hulten MC, Vlak JM (2005) Fitness and virulence of an ancestral white spot syndrome virus isolate from shrimp. Virus Res 110:9-20
17. Mello GL, Farias AP (2007) Policultivo de tilápias e camarões marinhos. Os resultados das primeiras experiências em Laguna - SC. Panorama Aquicultura 17:42-47
18. Musthaq SS, Sudhakaran R, Ahmed IVP, Balasubramanian G, Hameed SAS (2006) Variability in the tandem repetitive DNA sequence of white spot syndrome virus (WSSV) genome and suitability of VP28 gene to detect different isolates of WSSV from India. Aquaculture 256:34-41
19. Nadala ECB Jr, Loh PC (1998) A comparative study of three different isolates of white spot virus. Dis Aquat Org 33:231-234
20. Nunan LM, Lightner DV (1997) Development of a nonradioactive gene probe by PCR for detection of white spot syndrome virus (WSSV). J Virol Methods 63:193-201
21. OIE (Office International des Epizooties/World Animal Health Organization) (2005a) Immediate notification report 6307. OIE, Paris
22. OIE (Office International des Epizooties/World Animal Health Organization) (2005b) White spot disease in Brazil. Follow-up report no. 1. Dis Inf 18:248-249
23. Pradeep B, Shekar M, Gudkovs N, Karunasagar I, Karunasagar I (2008) Genotyping of white spot syndrome virus prevalent in shrimp farms of India. Dis Aquat Org 78:189-198
24. Seiffert WQ, Winckler S, Maggioni D (2005) A mancha branca em Santa Catarina. Rev Panorama Aqüicultura xs 87
25. Shekar M, Karunasagar I, Karunasagar I (2005) A computer based identification of variable number tandem repeats in white spot syndrome virus genomes. Curr Sci 89:882-887
26. van Hulten MCW, Witteveldt J, Peters S, Kloosterboer N and others (2001) The white spot syndrome virus DNA genome sequence. Virology 286:7-22
27. Vidal OM, Granja CB, Aranguren F, Broc JA, Salazar M (2001) A profound effect of hyperthermia on survival of Litopenaeus vannamei juveniles infected with the white spot syndrome virus. J World Aquacult Soc 32:364-372
28. Waikhom G, John KR, George MR, Jeyaseelan MJP (2006) Differential host passaging alters pathogenicity and induces genomic variation in white spot syndrome virus. Aquaculture 261:54-63
29. Wang Q, Nunan LM, Lightner DV (2000) Identification of genomic variations among geographic isolates of white spot syndrome virus using restriction analysis and Southern blot hybridization. Dis Aquat Org 43:175-181
30. Wongteerasupaya C, Pungchai P, Withyachumnarnkul B, Boomsaeng V, Panyim S, Flegel TW, Walker PJ (2003) High variation in repetitive DNA fragment length for white spot syndrome virus (WSSV) isolates in Thailand. Dis Aquat Org 54:253-257
31. Yang F, He J, Lin XH, Li Q, Pan D, Zhang XB, Xu X (2001) Complete genome sequence of the shrimp white spot baciliform virus. J Virol 75:11811-11820