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Volumn 16, Issue 5, 2010, Pages 926-941

Selection of RNA aptamers imported into yeast and human mitochondria

Author keywords

In gel FRET; Mitochondrial tRNA import; RNA aptamers; SELEX; Small synthetic RNAs

Indexed keywords

APTAMER; ENOLASE; RNA; TRANSFER RNA;

EID: 77951153670     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.1914110     Document Type: Article
Times cited : (57)

References (51)
  • 1
    • 0036264778 scopus 로고    scopus 로고
    • Mitochondrial RNA import in Leishmania tropica: Aptamers homologous to multiple tRNA domains that interact cooperatively or antagonistically at the inner membrane
    • Bhattacharyya SN, Chatterjee S, Adhya S. 2002. Mitochondrial RNA import in Leishmania tropica: Aptamers homologous to multiple tRNA domains that interact cooperatively or antagonistically at the inner membrane. Mol Cell Biol 22: 4372-4382.
    • (2002) Mol Cell Biol , vol.22 , pp. 4372-4382
    • Bhattacharyya, S.N.1    Chatterjee, S.2    Adhya, S.3
  • 2
    • 0043093728 scopus 로고    scopus 로고
    • 'Ping-pong' interactions between mitochondrial tRNA import receptors within a multiprotein complex
    • Bhattacharyya SN, Chatterjee S, Goswami S, Tripathi G, Dey SN, Adhya S. 2003. 'Ping-pong' interactions between mitochondrial tRNA import receptors within a multiprotein complex. Mol Cell Biol 23: 5217-5224.
    • (2003) Mol Cell Biol , vol.23 , pp. 5217-5224
    • Bhattacharyya, S.N.1    Chatterjee, S.2    Goswami, S.3    Tripathi, G.4    Dey, S.N.5    Adhya, S.6
  • 3
    • 35348879191 scopus 로고    scopus 로고
    • Elongation factor 1a mediates the specificity of mitochondrial tRNA import in T. brucei
    • Bouzaidi-Tiali N, Aeby E, Charriere F, Pusnik M, Schneider A. 2007. Elongation factor 1a mediates the specificity of mitochondrial tRNA import in T. brucei. EMBO J 26: 4302-4312.
    • (2007) EMBO J , vol.26 , pp. 4302-4312
    • Bouzaidi-Tiali, N.1    Aeby, E.2    Charriere, F.3    Pusnik, M.4    Schneider, A.5
  • 5
    • 0029361759 scopus 로고
    • In vitro selection methodologies to probe RNA function and structure
    • Conrad RC, Baskerville S, Ellington AD. 1995. In vitro selection methodologies to probe RNA function and structure. Mol Divers 1: 69-78.
    • (1995) Mol Divers , vol.1 , pp. 69-78
    • Conrad, R.C.1    Baskerville, S.2    Ellington, A.D.3
  • 6
    • 0029907152 scopus 로고    scopus 로고
    • Lys transcript: Anticodon recognition and conformational changes upon binding of a lysyladenylate analogue
    • Lys transcript: Anticodon recognition and conformational changes upon binding of a lysyladenylate analogue. EMBO J 15: 6321-6334.
    • (1996) EMBO J , vol.15 , pp. 6321-6334
    • Cusack, S.1    Yaremchuk, A.2    Tukalo, M.3
  • 7
    • 59749091105 scopus 로고    scopus 로고
    • Import of tRNAs and aminoacyl-tRNA synthetases into mitochondria
    • Duchene AM, Pujol C, Marechal-Drouard L. 2009. Import of tRNAs and aminoacyl-tRNA synthetases into mitochondria. Curr Genet 55: 1-18.
    • (2009) Curr Genet , vol.55 , pp. 1-18
    • Duchene, A.M.1    Pujol, C.2    Marechal-Drouard, L.3
  • 10
    • 0035824634 scopus 로고    scopus 로고
    • 5 S rRNA and tRNA import into human mitochondria. Comparison of in vitro requirements
    • Entelis NS, Kolesnikova OA, Dogan S, Martin RP, Tarassov IA. 2001. 5 S rRNA and tRNA import into human mitochondria. Comparison of in vitro requirements. J Biol Chem 276: 45642-45653.
    • (2001) J Biol Chem , vol.276 , pp. 45642-45653
    • Entelis, N.S.1    Kolesnikova, O.A.2    Dogan, S.3    Martin, R.P.4    Tarassov, I.A.5
  • 11
    • 0036363033 scopus 로고    scopus 로고
    • Import of nuclear encoded RNAs into yeast and human mitochondria: Experimental approaches and possible biomedical applications
    • Entelis N, Kolesnikova O, Kazakova H, Brandina I, Kamenski P, Martin RP, Tarassov I. 2002. Import of nuclear encoded RNAs into yeast and human mitochondria: Experimental approaches and possible biomedical applications. Genet Eng (N Y) 24: 191-213.
    • (2002) Genet Eng (N Y) , vol.24 , pp. 191-213
    • Entelis, N.1    Kolesnikova, O.2    Kazakova, H.3    Brandina, I.4    Kamenski, P.5    Martin, R.P.6    Tarassov, I.7
  • 12
    • 33745116978 scopus 로고    scopus 로고
    • A glycolytic enzyme, enolase, is recruited as a cofactor of tRNA targeting toward mitochondria in Saccharomyces cerevisiae
    • Entelis N, Brandina I, Kamenski P, Krasheninnikov IA, Martin RP, Tarassov I. 2006. A glycolytic enzyme, enolase, is recruited as a cofactor of tRNA targeting toward mitochondria in Saccharomyces cerevisiae. Genes & Dev 20: 1609-1620.
    • (2006) Genes & Dev , vol.20 , pp. 1609-1620
    • Entelis, N.1    Brandina, I.2    Kamenski, P.3    Krasheninnikov, I.A.4    Martin, R.P.5    Tarassov, I.6
  • 13
    • 65449172879 scopus 로고    scopus 로고
    • Gln is generated by a GatFAB-mediated transamidation pathway involving Arc1p-controlled subcellular sorting of cytosolic GluRS
    • Gln is generated by a GatFAB-mediated transamidation pathway involving Arc1p-controlled subcellular sorting of cytosolic GluRS. Genes & Dev 23: 1119-1130.
    • (2009) Genes & Dev , vol.23 , pp. 1119-1130
    • Frechin, M.1    Senger, B.2    Braye, M.3    Kern, D.4    Martin, R.P.5    Becker, H.D.6
  • 14
    • 0141940264 scopus 로고    scopus 로고
    • Allosteric regulation of tRNA import: Interactions between tRNA domains at the inner membrane of Leishmania mitochondria
    • Goswami S, Chatterjee S, Bhattacharyya SN, Basu S, Adhya S. 2003. Allosteric regulation of tRNA import: Interactions between tRNA domains at the inner membrane of Leishmania mitochondria. Nucleic Acids Res 31: 5552-5559.
    • (2003) Nucleic Acids Res , vol.31 , pp. 5552-5559
    • Goswami, S.1    Chatterjee, S.2    Bhattacharyya, S.N.3    Basu, S.4    Adhya, S.5
  • 15
    • 32644447756 scopus 로고    scopus 로고
    • Post-transcriptional nucleotide modification and alternative folding of RNA
    • Helm M. 2006. Post-transcriptional nucleotide modification and alternative folding of RNA. Nucleic Acids Res 34: 721-733.
    • (2006) Nucleic Acids Res , vol.34 , pp. 721-733
    • Helm, M.1
  • 16
    • 0038613099 scopus 로고    scopus 로고
    • Alternative tertiary structure of tRNA for recognition by a post-transcriptional modification enzyme
    • Ishitani R, Nureki O, Nameki N, Okada N, Nishimura S, Yokoyama S. 2003. Alternative tertiary structure of tRNA for recognition by a post-transcriptional modification enzyme. Cell 113: 383-394.
    • (2003) Cell , vol.113 , pp. 383-394
    • Ishitani, R.1    Nureki, O.2    Nameki, N.3    Okada, N.4    Nishimura, S.5    Yokoyama, S.6
  • 19
    • 0032955273 scopus 로고    scopus 로고
    • The aminoacceptor stem of the yeast tRNALys contains determinants of mitochondrial import selectivity
    • Kazakova HA, Entelis NS, Martin RP, Tarassov IA. 1999. The aminoacceptor stem of the yeast tRNALys contains determinants of mitochondrial import selectivity. FEBS Lett 442: 193-197.
    • (1999) FEBS Lett , vol.442 , pp. 193-197
    • Kazakova, H.A.1    Entelis, N.S.2    Martin, R.P.3    Tarassov, I.A.4
  • 21
    • 46749085102 scopus 로고    scopus 로고
    • Sculpting an RNA conformational energy landscape by a methyl group modification - A single-molecule FRET study
    • Kobitski AY, Hengesbach M, Helm M, Nienhaus GU. 2008. Sculpting an RNA conformational energy landscape by a methyl group modification - a single-molecule FRET study. Angew Chem Int Ed Engl 47: 4326-4330.
    • (2008) Angew Chem Int Ed Engl , vol.47 , pp. 4326-4330
    • Kobitski, A.Y.1    Hengesbach, M.2    Helm, M.3    Nienhaus, G.U.4
  • 22
    • 0035807914 scopus 로고    scopus 로고
    • Import of amber and ochre suppressor tRNAs into mammalian cells: A general approach to site-specific insertion of amino acid analogues into proteins
    • Kohrer C, Xie L, Kellerer S, Varshney U, RajBhandary UL. 2001. Import of amber and ochre suppressor tRNAs into mammalian cells: A general approach to site-specific insertion of amino acid analogues into proteins. Proc Natl Acad Sci 98: 14310-14315.
    • (2001) Proc Natl Acad Sci , vol.98 , pp. 14310-14315
    • Kohrer, C.1    Xie, L.2    Kellerer, S.3    Varshney, U.4    Rajbhandary, U.L.5
  • 26
    • 28344451166 scopus 로고    scopus 로고
    • Optimizing splinted ligation of highly structured small RNAs
    • Kurschat WC, Muller J, Wombacher R, Helm M. 2005. Optimizing splinted ligation of highly structured small RNAs. RNA 11: 1909-1914.
    • (2005) RNA , vol.11 , pp. 1909-1914
    • Kurschat, W.C.1    Muller, J.2    Wombacher, R.3    Helm, M.4
  • 28
    • 33750314614 scopus 로고    scopus 로고
    • Functional delivery of a cytosolic tRNA into mutant mitochondria of human cells
    • Mahata B, Mukherjee S, Mishra S, Bandyopadhyay A, Adhya S. 2006. Functional delivery of a cytosolic tRNA into mutant mitochondria of human cells. Science 314: 471-474.
    • (2006) Science , vol.314 , pp. 471-474
    • Mahata, B.1    Mukherjee, S.2    Mishra, S.3    Bandyopadhyay, A.4    Adhya, S.5
  • 29
    • 0017703333 scopus 로고
    • Study of yeast mitochondrial tRNAs by two-dimensional polyacrylamide gel electrophoresis: Characterization of isoaccepting species and search for imported cytoplasmic tRNAs
    • Martin RP, Schneller JM, Stahl AJ, Dirheimer G. 1977. Study of yeast mitochondrial tRNAs by two-dimensional polyacrylamide gel electrophoresis: Characterization of isoaccepting species and search for imported cytoplasmic tRNAs. Nucleic Acids Res 4: 3497-3510.
    • (1977) Nucleic Acids Res , vol.4 , pp. 3497-3510
    • Martin, R.P.1    Schneller, J.M.2    Stahl, A.J.3    Dirheimer, G.4
  • 30
    • 34547668525 scopus 로고    scopus 로고
    • Necessary and sufficient factors for the import of transfer RNA into the kinetoplast mitochondrion
    • Mukherjee S, Basu S, Home P, Dhar G, Adhya S. 2007. Necessary and sufficient factors for the import of transfer RNA into the kinetoplast mitochondrion. EMBO Rep 8: 589-595.
    • (2007) EMBO Rep , vol.8 , pp. 589-595
    • Mukherjee, S.1    Basu, S.2    Home, P.3    Dhar, G.4    Adhya, S.5
  • 32
    • 0028128819 scopus 로고
    • In vitro selection of small RNAs that bind to Escherichia coli phenylalanyl-tRNA synthetase
    • Peterson ET, Pan T, Coleman J, Uhlenbeck OC. 1994. In vitro selection of small RNAs that bind to Escherichia coli phenylalanyl-tRNA synthetase. J Mol Biol 242: 186-192.
    • (1994) J Mol Biol , vol.242 , pp. 186-192
    • Peterson, E.T.1    Pan, T.2    Coleman, J.3    Uhlenbeck, O.C.4
  • 33
  • 34
    • 15244360525 scopus 로고    scopus 로고
    • Architecture of recombination intermediates visualized by in-gel FRET of λ integrase-Holliday junction-arm DNA complexes
    • Radman-Livaja M, Biswas T, Mierke D, Landy A. 2005. Architecture of recombination intermediates visualized by in-gel FRET of λ integrase-Holliday junction-arm DNA complexes. Proc Natl Acad Sci 102: 3913-3920.
    • (2005) Proc Natl Acad Sci , vol.102 , pp. 3913-3920
    • Radman-Livaja, M.1    Biswas, T.2    Mierke, D.3    Landy, A.4
  • 35
    • 14644417246 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae imports the cytosolic pathway for Gln-tRNA synthesis into the mitochondrion
    • Rinehart J, Krett B, Rubio MA, Alfonzo JD, Soll D. 2005. Saccharomyces cerevisiae imports the cytosolic pathway for Gln-tRNA synthesis into the mitochondrion. Genes & Dev 19: 583-592.
    • (2005) Genes & Dev , vol.19 , pp. 583-592
    • Rinehart, J.1    Krett, B.2    Rubio, Ma.3    Alfonzo, J.D.4    Soll, D.5
  • 36
    • 0033913733 scopus 로고    scopus 로고
    • Selective importation of RNA into isolated mitochondria from Leishmania tarentolae
    • Rubio MA, Liu X, Yuzawa H, Alfonzo JD, Simpson L. 2000. Selective importation of RNA into isolated mitochondria from Leishmania tarentolae. RNA 6: 988-1003.
    • (2000) RNA , vol.6 , pp. 988-1003
    • Rubio, M.A.1    Liu, X.2    Yuzawa, H.3    Alfonzo, J.D.4    Simpson, L.5
  • 38
    • 0030035107 scopus 로고    scopus 로고
    • Mitochondrial import of only one of three nuclear-encoded glutamine tRNAs in Tetrahymena thermophila
    • Rusconi CP, Cech TR. 1996. Mitochondrial import of only one of three nuclear-encoded glutamine tRNAs in Tetrahymena thermophila. EMBO J 15: 3286-3295.
    • (1996) EMBO J , vol.15 , pp. 3286-3295
    • Rusconi, C.P.1    Cech, T.R.2
  • 41
    • 0033862354 scopus 로고    scopus 로고
    • The crystal structure of yeast phenylalanine tRNA at 1.93 Å resolution: A classic structure revisited
    • Shi H, Moore PB. 2000. The crystal structure of yeast phenylalanine tRNA at 1.93 Å resolution: A classic structure revisited. RNA 6: 1091-1105.
    • (2000) RNA , vol.6 , pp. 1091-1105
    • Shi, H.1    Moore, P.B.2
  • 43
    • 0015240593 scopus 로고
    • The structure and coding specificity of a lysine transfer ribonucleic acid from the haploid yeast Saccharomyces cerevisiae α S288C
    • SmithCJ, LeyAN, D'Obrenan P, Mitra SK. 1971. The structure and coding specificity of a lysine transfer ribonucleic acid from the haploid yeast Saccharomyces cerevisiae α S288C. J Biol Chem246: 7817-7819.
    • (1971) J Biol Chem , vol.246 , pp. 7817-7819
    • Smith, C.J.1    Ley, A.N.2    D'Obrenan, P.3    Mitra, S.K.4
  • 44
    • 33751010184 scopus 로고    scopus 로고
    • Architecture of the 99 bp DNA-six-protein regulatory complex of the l att site
    • Sun X, Mierke DF, Biswas T, Lee SY, Landy A, Radman-Livaja M. 2006. Architecture of the 99 bp DNA-six-protein regulatory complex of the l att site. Mol Cell 24: 569-580.
    • (2006) Mol Cell , vol.24 , pp. 569-580
    • Sun, X.1    Mierke, D.F.2    Biswas, T.3    Lee, S.Y.4    Landy, A.5    Radman-Livaja, M.6
  • 45
    • 0029017974 scopus 로고
    • Mitochondrial import of a cytoplasmic lysine-tRNA in yeast is mediated by cooperation of cytoplasmic and mitochondrial lysyl-tRNA synthetases
    • Tarassov I, Entelis N, Martin R. 1995. Mitochondrial import of a cytoplasmic lysine-tRNA in yeast is mediated by cooperation of cytoplasmic and mitochondrial lysyl-tRNA synthetases. EMBO J 14: 3461-3471.
    • (1995) EMBO J , vol.14 , pp. 3461-3471
    • Tarassov, I.1    Entelis, N.2    Martin, R.3
  • 47
    • 17744393686 scopus 로고    scopus 로고
    • Mitochondrial DNA mutations in human disease
    • Taylor RW, Turnbull DM. 2005. Mitochondrial DNA mutations in human disease. Nat Rev Genet 6: 389-402.
    • (2005) Nat Rev Genet , vol.6 , pp. 389-402
    • Taylor, R.W.1    Turnbull, D.M.2
  • 48
    • 0031038812 scopus 로고    scopus 로고
    • Selective inhibition of mutant human mitochondrial DNA replication in vitro by peptide nucleic acids
    • Taylor RW, Chinnery PF, Turnbull DM, Lightowlers RN. 1997. Selective inhibition of mutant human mitochondrial DNA replication in vitro by peptide nucleic acids. Nat Genet 15: 212-215.
    • (1997) Nat Genet , vol.15 , pp. 212-215
    • Taylor, R.W.1    Chinnery, P.F.2    Turnbull, D.M.3    Lightowlers, R.N.4
  • 49
    • 0025194307 scopus 로고
    • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
    • Tuerk C, Gold L. 1990. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 249: 505-510.
    • (1990) Science , vol.249 , pp. 505-510
    • Tuerk, C.1    Gold, L.2
  • 50
    • 44249099969 scopus 로고    scopus 로고
    • Probing RNA structural dynamics and function by fluorescence resonance energy transfer (FRET)
    • ed. SL Beaucage et al., Chap. 11, Unit 11.10. Wiley, New York
    • Walter NG. 2003. Probing RNA structural dynamics and function by fluorescence resonance energy transfer (FRET). In Current protocols in nucleic acid chemistry (ed. SL Beaucage et al.), Chap. 11, Unit 11.10. Wiley, New York.
    • (2003) Current Protocols in Nucleic Acid Chemistry
    • Walter, N.G.1


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