Observability analysis of Boolean networks with biological applications

ICCAS-SICE 2009 - ICROS-SICE International Joint Conference 2009, Proceedings

Volumn , Issue , 2009, Pages 4393-4396

  Kobayashi, Koichi ^a   Imura, Jun Ichi ^b  

^a JAPAN ADVANCED INSTITUTE OF SCIENCE AND TECHNOLOGY   (Japan)

^b TOKYO INSTITUTE OF TECHNOLOGY   (Japan)

Author keywords

Boolean network models; Hamming distance; Observability; Systems biology

Indexed keywords

BIOLOGICAL APPLICATIONS; BIOLOGICAL NETWORKS; BOOLEAN NETWORK MODELS; BOOLEAN NETWORKS; CONTROL PROBLEMS; GENE REGULATORY NETWORKS; METABOLIC NETWORK; OBSERVABILITY ANALYSIS; SIGNALING PATHWAYS; SUFFICIENT CONDITIONS; SYSTEMS BIOLOGY; TYPICAL MODEL;

BIOLOGY; OBSERVABILITY;

HAMMING DISTANCE;

EID: 77951095014     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (14)

1. S. Azuma, E. Yanagisawa, and J. Imura: Controllability Analysis of Biosystems Based on Piecewise Affine Systems Approach, IEEE Trans. on Automatic Control, 53, 139-152, 2008. (Pubitemid 351314545)
2. T. Akutsu, M. Hayashida, W.-K. Ching, and M. K. Ng: Control of Boolean networks: Hardness results and algorithms for tree structured networks, Journal of Theoretical Biology, 244, 670-679, 2007.
3. C. Belta, J. Schug, T. Dang, V. Kumar, G. J. Papas, H. Rubin, and P. Dunlap: Stability and reachability analysis of a hybrid model of luminescence in the marine bacterium Vibrio fischeri, Proc. 40th IEEE Conf. on Decision and Control, 869-874, 2001.
4. A. Bemporad and M. Morari: Control of systems integrating logic, dynamics, and constraints, Automatica, 35, 407-427, 1999.
5. A. Bemporad, G. Ferrari-Trecate, and M. Morari: Observability and Controllability of Piecewise Affine and Hybrid Systems, IEEE Trans. on Automatic Control, 45, 1864-1876, 2000.
6. A. Datta, A. Choudhary, M. L. Bittner, and E. R. Dougherty: External control in Markovian genetic regulatory networks: the imperfect information case, Bioinfomatics, 20, 924-930, 2004. (Pubitemid 38559734)
7. G. Ferrari-Trecate and J. Lygeros,J. Eds., Proc. 45th IEEE Conf. on Decision and Control/Workshop Hybrid Systems Biology, 2006.
8. S. Gupta, S. S. Bisht, R. Kukreti, S. Jain, and S. K. Brahmachari: Boolean network analysis of a neuro-transmitter signaling pathway, Journal of Theoretical Biology, 244, 469-469, 2007.
9. H. D. Jong: Modeling and Simulation of Genetic Regulatory Systems: A Literature Review, Journal of Computational Biology, 9, 67-103, 2002.
10. S. A. Kauffman: Metabolic stability and epigenesis in randomly constructed genetic nets, Journal of Theoretical Biology, 22, 437-467, 1969.
11. S. A. Kauffman: The Origins of Order: Self-Organization and Selection in Evolution, Oxford University Press, 1993.
12. M. Khammash, C. J. Tomlin, and M. Vidyasagar Eds., Joint Special Issue on Systems Biology, IEEE Trans. on Automatic Control & IEEE Trans. on Circuits and Systems I, January, 2008.
13. K. Kobayashi, J. Imura, and K. Hiraishi: Polynomial-Time Controllability Analysis of Boolean Networks, to appear in 2009 American Control Conf..
14. http://www.ilog.com/products/cplex/