Analysis of Genetic Diversity in Natural Populations of Psathyrostachys huashanica Keng Using Microsatellite (SSR) Markers

Agricultural Sciences in China

Volumn 9, Issue 4, 2010, Pages 463-471

  LIU, Wen xian ^a,b,c   LIU, Wei hua ^a   WU, Jun ^d   GAO, Ai nong ^a   LI, Li hui ^a  

^a INSTITUTE OF PLANT PROTECTION   (China)

^b INSTITUTE OF BOTANY   (China)

^c UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

^d NORTHWEST A F UNIVERSITY   (China)

Author keywords

conservation implication; genetic diversity; Psathyrostachys huashanica Keng; SSR

Indexed keywords

PSATHYROSTACHYS HUASHANICA;

EID: 77951038754     PISSN: 16712927     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1671-2927(09)60118-8     Document Type: Article

References (42)

1. Arnold M.L. Anderson's paradigm: Louisiana Irises and the study of evolutionary phenomena. Molecular Ecology 9 (2000) 1687-1698
2. Bertin P.D., Grégoire S., Massart D., and de Froidmont. Genetic diversity among European cultivated spelt revealed by microsatellites. Theoretical and Applied Genetics 102 (2001) 148-156
3. Chen H.M., Li L.Z., Wei X.Y., Li S.S., Lei T.D., Hu H.Z., Wang H.G., and Zhang X.S. Development, chromosome location and genetic mapping of EST-SSR markers in wheat. Chinese Science Bulletin 50 (2005) 2328-2336
4. Condit R., and Hubbell S.P. Abundance and DNA sequence of two-base repeat regions in tropical tree genomes. Genome 34 (1991) 66-71
5. Davierwala A.P., Ramakrishna W., and Ranjekar P.K. Sequence variations at a complex microsatellite locus in rice and its conservation in cereals. Theoretical and Applied Genetics 101 (2000) 1291-1298
6. Ellstrand N.C., and Roose M.L. Patterns of genotypic diversity in clonal plant species. American Journal of Botany 74 (1987) 123-131
7. Fahima T., Rõder M.S., and Wendehake K. Microsatellite polymorphism in natural populations of wild emmer wheat, Triticum dicoccoides, in Isreal. Theoretical and Applied Genetics 104 (2002) 17-29
8. Hamrick J.L., and Godt M.J.W. Allozyme diversity in plant species. In: Browm A., Clegg M.T., Kaher A.L., and Weir B.S. (Eds). Plant Population Genetics, Breeding and Genetic Resources (1989), Sinauer, Sunderland 43-63
9. Hamrick J.L., Godt M.J.W., and Sherman-Broyles S.L. Gene flow among plant populations: evidence from genetic markers. In: Peter C.H., and Stephenson A.G. (Eds). Experimental and Molecular Approaches to Plant Biosystematics (1995), Missouri Botanical Garden Press, St. Louis 215-232
10. Hang Y., Jin Y., and Lu B.R. Genetic diversity of the endangered species Psathyrostachys huashanica in China and its strategic conservation. Journal of Fudan University (Natural Science) 43 (2004) 260-266 (in Chinese)
11. Hou W.S., Zhang A.J., and Yang Q.H. Breeding and cytogenetic study of Triticum aestivume-Psathyrostachyshuashanica alien substitution lines. Acta Botanica Boreali-Occidentalia Sinica 17 (1997) 368-373 (in Chinese)
12. Instituto Botanico Boreal-occidentali Academiae Sinicae. Flora tsinlingensis vol. 1 (1976), Chinses Scientific Press, Beijing 99 (in Chinese)
13. Jones E.S., Dupal M.P., and Kölliker R. Development and characterization of simple sequence repeat (SSR) markers for perennial ryegrass (Lolium perenne L.). Theoretical and Applied Genetics 102 (2001) 405-415
14. Lande R. Genetics and demography in biological conservation. Science 241 (1988) 1455-1460
15. Liu Z.L., Li S., Yan G.Q., Song Y., and Zhao G.F. Genetic structure and intraspecific genetic polymorphisms in natural populations of Psathyrostachys huashanica. Acta Genetica Sinica 28 (2001) 769-777 (in Chinese)
16. Lu B.R. Diversity and conservation of the Triticeae genetic resources. Chinese Biodivesity 3 (1995) 63-68 (in Chinese)
17. McCouch S.R., Chen X., Panaud O., Temnykh S., Xu Y., Cho Y.G., Huang N., Ishii T., and Blair M. Microsatellite marker development, mapping and application in rice genetics and breeding. Plant Molecular Biology 35 (1997) 89-99
18. Nei M. Analysis of gene diversity in subdivided populations. Proceedings of the National Academy of Sciences of the USA 70 (1973) 3321-3323
19. Nei M. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89 (1978) 583-590
20. Peakall R., Gilmore S., and Keys W. Cross-species application of soybean (Glycine max) simple sequence repeats (SSRs) within the genus and other legume genera: implications for the transferability of SSRs in plants. Molecular Biology and Evolution 15 (1998) 1275-1287
21. Pestova E., Ganal M.W., and Röder M.S. Isolation and mapping of microsatellite markers specific for the D genome of bread wheat. Genome 43 (2000) 689-697
22. Röder M.S., Korzun V., Wendehake K., Plaschke J., Tixier M.H., Leroy P., and Ganal M.W. A microsatellite map of wheat. Genetics 149 (1998) 2007-2023
23. Röder M.S., Plaschke J., König S.U., Börner A., Sorrells M.E., Tanksley S.D., and Ganal M.W. Abundance, variability and chromosomal location of microsatellites in wheat. Molecular Genetics and Genomics 246 (1995) 327-333
24. Rohlf F.J. NTSYS-pc: Numerical Taxonomy and Multivariate Analysis System (2000), Exeter Software, New York, USA
25. Saghai Maroof M.A., Biyashev R.M., Yang G.P., Zhang Q., and Allard R.W. Extraordinarily polymorphic microsatellite DNA in barley - species diversity, chromosomal locations, and population dynamics. Proceedings of the National Academy of Sciences of the USA 91 (1994) 5466-5470
26. Selander R.K., and Whittman T.S. Protein polymorphism and the genetic structure of populations. In: Nei M., and Koehn R.K. (Eds). Evolution of Genes and Proteins (1983), Sinaue Associates, Sunderland, Massachusetts 89-114
27. Sun G.L., Diaz O., Salomon B., and von Bothmer R. Genetic diversity and structure in a natural Elymus caninus population from Denmark based on microsatellite and isozyme analysis. Plant Systematics and Evolution 227 (2001) 235-244
28. Tautz D. Hypervariability of simple sequences as a general source for polymorphic DNA markers. Nuleic Acids Research 17 (1989) 6463-6471
29. The Compiling Team of Final Report of Protection Plan on the Biodiversity in China. The Protection Plan of Chinese Biodiversity (1994), Chinese Environment Science Press, Beijing 92 (in Chinese)
30. Vogelmann J.E., and Gastony G.J. Electrophoretic enzyme analusis of North American and eastern Asian populations of Agastache sect. Agastache (Labiatac). American Journal of Botany 74 (1987) 385-393
31. Wang L., Guo J., and Zhao G.F. Genetic diversity of the endangered and endemic species Psathyrostachys huashanica natural populations using simple sequence repeats (SSRs) markers. Biochemical Systematics and Ecology 34 (2006) 310-318
32. Wang L., Yang J., Guo J., and Zhao G.F. Genetic structure and differentiation of Psathyrostachys huashanica populations detected with RAPD markers. Fronters of Biology in China 25 (2005) 719-726 (in Chinese)
33. Wang Richard R.C., and Hsiao C. Morphology and cytology of inter-specific hybrids of Leymus mollis. Journal of Heredity 75 (1984) 488-492
34. Wang Richard R.C., Kevin B., and Jensen. Absence of the J genome in Leymus species (Poaceae: Triticeae): evidence from DNA hybridization and meiotic pairing. Genome 37 (1994) 231-235
35. Wang Z.R. Plant Allozyme Analysis (1998), Science Press, Beijing 121-123
36. Wright S. Evolution in mendelian populations. Genetics 16 (1931) 97-159
37. Yamamoto T., Kimura T., and Sawamura Y. SSRs isolated from apple can identify polymorphism and genetic diversity in pear. Theoretical and Applied Genetics 102 (2001) 865-870
38. Young A.B., and Brown A. Comparative population genetic structure of the rare woodland shrub Daviesia suaveolens and its common congener D. mimosoides. Conservation Biology 10 (1996) 1220-1228
39. Yue M., Zhang L.J., Ma K., and Zhao G.F. Endangering reason and reproductive strategy of Psathyrostachys huashanica population. Acta Ecologica Sinica 21 (2001) 1314-1320 (in Chinese)
40. Zhang H.D., and Dvorak J. The genome origin of tetraploid species of Leymus (Poaceae: Triticeae) inferred from variation in repeated mucliotide sequence. American Journal of Botany 78 (1991) 871-884
41. Zhang L.J., Wang L., Li Z.X., and Zhao G.F. The microsporogenesis and male gamephyte development of Psathyrostachys huashanica Keng. Journal of Northwest University 32 (2002) 77-80 (in Chinese)
42. Zhao L.F., Li S., Pan Y., Yang G.Q., and Zhao G.F. Population differentiation of Psathyrostachys huashanica along an altitudinal gradient detected by random amplified polymorphic DNA. Acta Botanica Boreali-Occidentalia Sinica 21 (2001) 391-400 (in Chinese)