Analysis of epigenetic modifications by next generation sequencing

Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009

Volumn , Issue , 2009, Pages 6730-

  Liang, Shoudan ^a   Lu, Yue ^a   Jelinek, Jaroslav ^a   Estecio, Marcos ^a   Li, Hao ^b   Issa, Jean Pierre ^a  

^a UNIVERSITY OF TEXAS   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALKYLATION; CHEMICAL ANALYSIS; CHEMICAL MODIFICATION; DNA; DNA SEQUENCES; GENE EXPRESSION; METHYLATION; PLANTS (BOTANY); PROTEINS;

COMPUTATIONAL CHALLENGES; DNA METHYLATION ANALYSIS; EPIGENETIC MODIFICATION; HISTONE MODIFICATION; NEXT-GENERATION DNA SEQUENCING; NEXT-GENERATION SEQUENCING; RAPIDLY ADVANCING TECHNOLOGY; RESTRICTION ENZYMES;

GENE ENCODING;

EID: 77950991526     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/IEMBS.2009.5332853     Document Type: Conference Paper

References (3)

1. Li, H, Ruan, J. and Durbin, R. "Mapping short DNA sequencing reads and calling variants using mapping quality scores", Genome Res. 2008 18: 1851-1858.
2. Yong Zhang, Tao Liu, Clifford A Meyer, J. Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nussbaum, Richard M Myers, Myles Brown, Wei Li and X Shirley Liu, "Model-based Analysis of ChIP-Seq (MACS)", Genome Biology 2008, 9:R137.
3. Rozowsky J, Euskirchen G, Auerbach R, Zhang Z, Gibson T, Bjornson R, Carriero N, Snyder M, Gerstein M: PeakSeq: Systematic Scoring of ChIP-Seq Experiments Relative to Controls, Nat Biotech. 2009, 27:66-75.