New variations of Epstein-Barr virus-encoded small RNA genes in nasopharyngeal carcinomas, gastric carcinomas, and healthy donors in northern China

Journal of Medical Virology

Volumn 82, Issue 5, 2010, Pages 829-836

  Wang, Yun ^a   Zhang, Xia ^a   Chao, Yan ^a   Jia, Yuping ^a   Xing, Xiaoming ^a   Luo, Bing ^a  

^a QINGDAO UNIVERSITY MEDICAL COLLEGE   (China)

Author keywords

EBER; Epstein Barr virus; Gastric carcinoma; Nasopharyngeal carcinoma; Polymorphism

Indexed keywords

DNA FRAGMENT; EPSTEIN BARR VIRUS ENCODED SMALL RNA; GENOMIC DNA; UNCLASSIFIED DRUG; VIRUS RNA;

ARTICLE; CHINA; CONSENSUS SEQUENCE; CONTROLLED STUDY; DISEASE ASSOCIATION; EPSTEIN BARR VIRUS; GENETIC POLYMORPHISM; HUMAN; IN SITU HYBRIDIZATION; MAJOR CLINICAL STUDY; NASOPHARYNX CARCINOMA; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; STOMACH CARCINOMA; VIRUS ISOLATION;

ADULT; CARCINOMA; CARRIER STATE; CHINA; GENOTYPE; HERPESVIRUS 4, HUMAN; HUMANS; NASOPHARYNGEAL NEOPLASMS; POLYMORPHISM, GENETIC; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; STOMACH NEOPLASMS; YOUNG ADULT;

HUMAN HERPESVIRUS 4;

EID: 77950971129     PISSN: 01466615     EISSN: 10969071     Source Type: Journal    
DOI: 10.1002/jmv.21714     Document Type: Article

References (48)

1. Akiba S, Koriyama C, Herrera-Goepfert R, Eizuru Y. 2008. Epstein-Barr virus associated gastric carcinoma: Epidemiological and clinicopathological features. Cancer Sci 99:195-201. (Pubitemid 351228470)
2. Arrand JR, Young LS, Tugwood JD. 1989. Two families of sequences in the small RNA-encoding region of Epstein-Barr virus (EBV) correlate with EBV types A and B. J Virol 63:983-986.
3. Baer R, Bankier AT, Biggin MD, Deininger PL, Fallell PJ, Gibson TJ, Hatfull G, Hudson GS, Satchwell SC, Seguin C, Tuffnell PS, Barrell BG. 1984. DNA sequence and expression of the B95-8 Epstein-Barr virus genome. Nature 310:207-211.
4. Bornkamm GW. 2009. Epstein-Barr virus and the pathogenesis of Burkitt's lymphoma: More questions than answers. Int J Cancer 124:1745-1755.
5. Chang CM, Yu KJ, Mbulaiteye SM, Hildesheim A, Bhatia K. 2009. The extent of genetic diversity of Epstein-Barr virus and its geographic anddisease patterns: A need for reappraisal. Virus Res 143:209-221.
6. Clarke PA, Schwemmle M, Schickinger J, Hilse K, Clemens MJ. 1991. Binding of Epstein-Barr virus small RNA EBER-1 to the double stranded RNA-activated protein kinase DAI. Nucleic Acids Res 19:243-248. (Pubitemid 21896965)
7. Clemens MJ. 1993. The small RNAs of Epstein-Barr virus. Mol Biol Rep 17:81-92.
8. Dolan A, Addison C, Gatherer D, Davison AJ, McGeoch DJ. 2006. The genome of Epstein-Barr virus type 2 strain AG876. Virology 350:164-170.
9. Felton-Edkins ZA, Kondrashov A, Karali D, Fairley JA, Dawson CW, Arrand JR, Young LS, White RJ. 2006. Epstein-Barr virus induces cellular transcription factors to allow active expression of EBER genes by RNA polymerase III. J Biol Chem 281:33871-33880.
10. Fok V, Mitton-Fry RM, Grech A, Steitz JA. 2006. Multiple domains of EBER 1, an Epstein-Barr virus noncoding RNA, recruit human ribosomal protein L22. RNA 12:872-882.
11. Frank D, Cesarman E, Liu YF, Michler RE, Knowles DM. 1995. Posttransplantation lymphoproliferative disorders frequently contain type A and not type B Epstein-Barr virus. Blood 85:1396-1403.
12. Glickman JN, Howe JG, Steitz JA. 1988. Structural analyses of EBER1 and EBER2 ribonucleoprotein particles present in Epstein-Barr virus-infected cells. J Virol 62:902-911.
13. Gratama JW, Ernberg I. 1995. Molecular epidemiology of Epstein-Barr virus infection. Adv Cancer Res 67:197-225.
14. Gulley ML, Glaser SL, Craig FE, Borowitz M, Mann RB, Shema SJ, Ambinder RF. 2002. Guidelines for interpreting EBER in situ hybridization and LMP1 immunohistochemical tests for detecting Epstein-Barr virus in Hodgkin lymphoma. Am J Clin Pathol 117:259-267.
15. Houmani JL, Davis CI, Ruf IK. 2009. Growth-promoting properties of Epstein-Barr virus EBER-1 RNA correlate with ribosomal protein L22 binding. J Virol 83:9844-9853.
16. Howe JG, Shu MD. 1988. Isolation and characterization of the genes for two small RNAs of herpesvirus papio and their comparison with Epstein-Barr virus-encoded EBER RNAs. J Virol 62:2790-2798.
17. Ikuta K, Satoh Y, Hoshikawa Y, Sairenji T. 2000. Detection of Epstein-Barr virus in salivas and throat washings in healthy adults and children. Microbes Infect 2:115-120.
18. Iwakiri D, Eizuru Y, Tokunaga M, Takada K. 2003. Autocrine growth of Epstein-Barr virus-positive gastric carcinoma cells mediated by an Epstein-Barr virus-encoded small RNA. Cancer Res 63:7062-7067.
19. Iwakiri D, Sheen TS, Chen JY, Huang DP, Takada K. 2005. Epstein-Barr virus-encoded small RNA induces insulin-like growth factor 1 and supports growth of nasopharyngeal carcinoma-derived cell lines. Oncogene 24:1767-1773.
20. Janse van Rensburg E, van Heerden WF, Robson BA, Swart TJ, Engelbrecht S. 2000. Epstein-Barr virus strain characterization in South African patients with nasopharyngeal carcinomas. Anti-cancer Res 20:1953-1957.
21. Jilg W, Sieger E, Alliger P, Wolf H. 1990. Identification of type A and B isolates of Epstein-Barr virus by polymerase chain reaction. J Virol Methods 30:319-322.
22. Kieff E, Rickinson AB. 2001. Epstein-Barr virus and its replication. In: Knipe DM, Howley PM, editors. Field's virology. Philadelphia: Lippincott Williams and Wilkins. pp. 2511-2574.
23. Komano J, Maruo S, Kurozumi K, Oda T, Takada K. 1999. Oncogenic role of Epstein-Barr virus-encoded RNAs in Burkitt's lymphoma cell line Akata. J Virol 73:9827-9831.
24. Kunimoto M, Tamura S, Tabata T, Yoshie O. 1992. One-step typing of Epstein-Barr virus by polymerase chain reaction: Predominance of type 1 virus in Japan. J Gen Virol 73:455-461.
25. Lee WK, Kim SM, Sim YS, Cho SG, Park SH, Kim CW, Park JG. 1998. B-lymphoblastoid cell lines from cancer patients. In Vitro Cell Dev Biol Anim 34:97-100.
26. Lee JH, Kim SH, Han SH, An JS, Lee ES, Kim YS. 2009. Clinicopathological and molecular characteristics of Epstein-Barr virus-associated gastric carcinoma: A meta-analysis. J Gastroenterol Hepatol 24:354-365.
27. Lin JC, Lin SC, De BK, Chan WP, Evatt BL, Chan WC. 1993. Precision of genotyping of Epstein-Barr virus by polymerase chain reaction using three gene loci (EBNA-2, EBNA-3C, and EBER): Predominance of type A virus associated with Hodgkin's disease. Blood 81:3372-3381.
28. Maruo S, Nanbo A, Takada K. 2001. Replacement of the Epstein-Barr virus plasmid with the EBER plasmid in Burkitt's lymphoma cells. J Virol 75:9977-9982.
29. Menin C, Ometto L, Veronesi A, Roncella S, Corneo B, Montagna M, Coppola V, Veronese ML, Indraccolo S, Amadori A, De Rossi A, Ferrarini M, Chieco-Bianchi L, D'Andrea E. 1996. Analysis of Epstein-Barr virus (EBV) type and variant in spontaneous lymphoblastoid cells and Hu-SCID mouse tumours. Mol Cell Probes 10:453-461.
30. Miller G, Shope T, Lisco H, Stitt D, Lipman M. 1972. Epstein-Barr virus: Transformation, cytopathic changes, and viral antigens in squirrel monkey and marmoset leukocytes. Proc Natl Acad Sci USA 69:383-387.
31. Nanbo A, Takada K. 2002. The role of Epstein-Barr virus-encoded small RNAs (EBERs) in oncogenesis. Rev Med Virol 12:321-326.
32. Niedobitek G. 2000. Epstein-Barr virus infection in the pathogenesis of nasopharyngeal carcinoma. Mol Pathol 53:248-254.
33. Niller HH, Salamon D, Ilg K, Koroknai A, Banati F, Bauml G, Rucker O, Schwarzmann F, Wolf H, Minarovits J. 2003. The in vivo binding site for oncoprotein c-Myc in the promoter for Epstein-Bar virus (EBV) encoding RNA (EBER) 1 suggests a specific role for EBV in lymphomagenesis. Med Sci Monit 9:1-9.
34. Puchhammer-Stöckl E, Görzer I. 2006. Cytomegalovirus and Epstein-Barr virus subtypes - The search for clinical significance. J Clin Virol 36:239-248.
35. Rickinson AB, Kieff E. 2001. Epstein-Barr virus. In: Knipe DM, Howley PM, editors. Field's virology. Philadelphia: Lippincott Williams and Wilkins. pp. 2575-2627.
36. Rowe M, Young LS, Cadwallader K, Petti L, Kieff E, Rickinson AB. 1989. Distinction between Epstein-Barr virus type A (EBNA 2A) and type B (EBNA 2B) isolates extends to the EBNA 3 family of nuclear proteins. J Virol 63:1031-1039.
37. Ruf IK, Rhyne PW, Yang C, Cleveland JL, Sample JT. 2000. Epstein-Barr virus small RNAs potentiate tumorigenicity of Burkitt lymphoma cells independently of an effect on apoptosis. J Virol 74:10223-10228.
38. Samanta M, Iwakiri D, Takada K. 2008. Epstein-Barr virus-encoded small RNA induces IL-10 through RIG-I-mediated IRF-3 signaling. Oncogene 27:4150-4160.
39. Sample J, Young L, Martin B, Chatman T, Kieff E, Rickinson A, Kieff E. 1990. Epstein-Barr virus types 1 and 2 differ in their EBNA-3A, EBNA-3B, and EBNA-3C genes. J Virol 64:4084-4092.
40. Schuster V, Ott G, Seidenspinner S, Kreth HW. 1996. Common Epstein-Barr virus (EBV) type-1 variant strains in both malignant and benign EBV-associated disorders. Blood 87:1579-1585.
41. Sugiura M, Imai S, Tokunaga M, Koizumi S, Uchizawa M, Okamoto K, Osato T. 1996. Transcriptional analysis of Epstein-Barr virus gene expression in EBV-positive gastric carcinoma: Unique viral latency in the tumor cells. Br J Cancer 74:625-631.
42. Thompson MP, Kurzrock R. 2004. Epstein-Barr virus and cancer. Clin Cancer Res 10:803-821.
43. Wu Y, Maruo S, Yajima M, Kanda T, Takada K. 2007. Epstein-Barr virus (EBV)-encodedRNA2 (EBER2) but not EBER1 plays a critical role in EBV-induced B-cell growth transformation. J Virol 81: 11236-11245.
44. Yajima M, Kanda T, Takada K. 2005. Critical role of Epstein-Barr Virus (EBV)-encoded RNA in efficient EBV-induced B-lymphocyte growth transformation. J Virol 79:4298-4307.
45. Yamamoto N, Takizawa T, Iwanaga Y, Shimizu N, Yamamoto N. 2000. Malignant transformation of B lymphoma cell line BJAB by Epstein-Barr virus-encoded small RNAs. FEBS Lett 484:153-158.
46. Yoshizaki T, Endo K, Ren Q, Wakisaka N, Murono S, Kondo S, Sato H, Furukawa M. 2007. Oncogenic role of Epstein-Barr virus-encoded small RNAs (EBERs) in nasopharyngeal carcinoma. Auris Nasus Larynx 34:73-78.
47. Zeng MS, Li DJ, Liu QL, Song LB, Li MZ, Zhang RH, Yu XJ, Wang HM, Ernberg I, Zeng YX. 2005. Genomic sequence analysis of Epstein-Barr virus strain GD1 from a nasopharyngeal carcinoma patient. J Virol 79:15323-15330.
48. Zhang XS, Zhang LJ, Zhang RH, Mai HQ, Chen JJ, Zeng YX. 2001. Relationship between polymorphism of Epstein-Barr virus-encoded small RNAs and nasopharyngeal carcinomas. J Practical Oncol 16:301-303.