Accurate estimation of microtubule dynamics using kymographs and variable-rate particle filters

Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009

Volumn , Issue , 2009, Pages 1012-1015

  Smal, Ihor ^a   Grigoriev, Ilya ^a   Akhmanova, Anna ^a   Niessen, Wiro J ^a   Meijering, Erik ^a  

^a ERASMUS MEDICAL CENTER   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

BANDPASS FILTERS; BAYESIAN NETWORKS; DYNAMICS; IMAGE SEGMENTATION; MONTE CARLO METHODS; SIGNAL FILTERING AND PREDICTION;

ACCURATE ESTIMATION; BAYESIAN ESTIMATIONS; INTRACELLULAR DYNAMICS; KINEMATIC PARAMETERS; MICROTUBULE DYNAMICS; PROBABILISTIC METHODS; SPATIOTEMPORAL INFORMATION; VARIABLE RATE PARTICLE FILTERS;

IMAGE ANALYSIS;

EID: 77950964168     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/IEMBS.2009.5333350     Document Type: Conference Paper

References (16)

1. E. L. Munteanu, "Dynamics and regulation at the tip: A high resolution view on microtubule assembly," Ph.D. dissertation, Institute for Atomic and Molecular Physics (AMOLF), Amsterdam, 2008.
2. Y. Komarova, C. O. de Groot, I. Grigoriev, S. M. Gouveia, E. L. Munteanu, J. M. Schober, S. Honnappa, R. M. Buey, C. C. Hoogenraad, M. Dogterom, G. G. Borisy, M. O. Steinmetz, and A. Akhmanova, "Mammalian end binding proteins control persistent microtubule growth," Journal of Cell Biology, vol.184, pp. 691-706, 2009.
3. D. J. Stephens and V. J. Allan, "Light microscopy techniques for live cell imaging," Science, vol.300, no.5616, pp. 82-86, 2003.
4. Q. Wu, F. A. Merchant, and K. R. Castleman, Microscope Image Processing. Burlington, MA: Elsevier Academic Press, 2008.
5. D. Thomann, D. R. Rines, P. K. Sorger, and G. Danuser, "Automatic fluorescent tag detection in 3D with super-resolution: Application to the analysis of chromosome movement," Journal of Microscopy, vol.208, no.1, pp. 49-64, 2002.
6. A. Genovesio, T. Liedl, V. Emiliani, W. J. Parak, M. Coppey- Moisan, and J.-C. Olivo-Marin, "Multiple particle tracking in 3-D+t microscopy: Method and application to the tracking of endocytosed quantum dots," IEEE Transactions on Image Processing, vol.15, no.5, pp. 1062-1070, 2006.
7. K. Jaqaman, D. Loerke, M. Mettlen, H. Kuwata, S. Grinstein, S. Schmid, and G. Danuser, "Robust single-particle tracking in livecell time-lapse sequences," Nature Methods, vol.5, no.8, pp. 695-702, 2008.
8. E. Meijering, I. Smal, and G. Danuser, "Tracking in molecular bioimaging," IEEE Signal Processing Magazine, vol.23, no.3, pp. 46-53, 2006.
9. I. Smal, K. Draegestein, N. Galjart, W. Niessen, and E. Meijering, "Particle filtering for multiple object tracking in dynamic fluorescence microscopy images: Application to microtubule growth analysis," IEEE Transactions on Medical Imaging, vol.27, no.6, pp. 789-804, 2008.
10. S. Bonneau, M. Dahan, and L. D. Cohen, "Single quantum dot tracking based on perceptual grouping using minimal paths in a spatiotemporal volume," IEEE Transactions on Image Processing, vol.14, no.9, pp. 1384-1395, 2005.
11. B. Hinz, W. Alt, C. Johnen, V. Herzog, and H.-W. Kaiser, "Quantifying lamella dynamics of cultured cells by SACED, a new computer-assisted motion analysis," Experimental Cell Research, vol.251, pp. 234-243, 1999.
12. A. Akhmanova and M. O. Steinmetz, "Tracking the ends: a dynamic protein network controls the fate of microtubule tips," Nature Reviews Molecular Cell Biology, vol.9, no.4, pp. 309-322, 2008.
13. T. Mitchison and M. Kirschner, "Dynamic instability of microtubule growth," Nature, vol.312, no.5991, pp. 237-242, 1984.
14. S. M. Arulampalam, S. Maskell, N. Gordon, and T. Clapp, "A tutorial on particle filters for online nonlinear/non-Gaussian Bayesian tracking," IEEE Transactions on Signal Processing, vol.50, no.2, pp. 174-188, 2002.
15. S. Godsill and J. Vermaak, "Variable rate particle filters for tracking applications," in Proceedings of the IEEE/SP 13th Workshop on Statistical Signal Processing, 2005, pp. 1280-1285.
16. I. Zaliapin, I. Semenova, A. Kashina, and V. Rodionov, "Multiscale trend analysis of microtubule transport in melanophores," Biophysical Journal, vol.88, pp. 4008-4016, 2005.