Prediction of kinetic parameters from DNA-binding site sequences for modeling global transcription dynamics in Escherichia coli

Metabolic Engineering

Volumn 12, Issue 3, 2010, Pages 196-211

  Hardiman, Timo ^a   Meinhold, Hannes ^a   Hofmann, Johannes ^a   Ewald, Jennifer C ^a   Siemann Herzberg, Martin ^a   Reuss, Matthias ^a  

^a UNIVERSITY OF STUTTGART   (Germany)

Author keywords

Cell volume; Central carbon metabolism; Cra; Fed batch; Fructose 1,6 bis(phosphate); fruR; Gene regulatory network; Glucose limitation; Growth rate dependent regulation; Position weight matrix; Promoter; Regulation; RNA polymerase; Transcription rate

Indexed keywords

CARBON METABOLISM; CELL VOLUME; CRA; FED BATCHES; FED-BATCH; FRUR; GENE REGULATORY NETWORK; GENE REGULATORY NETWORKS; POSITION WEIGHT MATRIX; RNA POLYMERASE; WEIGHT MATRICES;

BINDING ENERGY; BINDING SITES; DNA; DNA SEQUENCES; ESCHERICHIA COLI; FORECASTING; FRUCTOSE; GENES; GLUCOSE; KINETIC PARAMETERS; LAWS AND LEGISLATION; METABOLISM; POLYMERS; PROTEINS; RNA;

TRANSCRIPTION;

FRUCTOSE 1,6 BISPHOSPHATE; RNA; RNA POLYMERASE;

ARTICLE; CELL VOLUME; DNA BINDING; DNA SEQUENCE; ESCHERICHIA COLI; GENE REGULATORY NETWORK; GENETIC TRANSCRIPTION; GROWTH RATE; KINETICS; MATHEMATICAL MODEL; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN DNA BINDING;

BASE SEQUENCE; BINDING SITES; DNA-BINDING PROTEINS; DNA-DIRECTED RNA POLYMERASES; ESCHERICHIA COLI; GENE EXPRESSION REGULATION; GENE REGULATORY NETWORKS; GLUCOSE; RNA; TRANSCRIPTION FACTORS;

ESCHERICHIA COLI;

EID: 77950857659     PISSN: 10967176     EISSN: 10967184     Source Type: Journal    
DOI: 10.1016/j.ymben.2009.10.006     Document Type: Article

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