Automated detection and analysis of foraging behavior in C. elegans

Proceedings of the IEEE Southwest Symposium on Image Analysis and Interpretation

Volumn , Issue , 2008, Pages 29-32

  Huang, Kuang Man ^a   Cosman, Pamela ^a   Schafer, William R ^b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b MRC LABORATORY OF MOLECULAR BIOLOGY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

AUTOMATED DETECTION; AUTOMATED METHODS; BENDING ANGLE; ELEGANS; FORAGING BEHAVIORS; GENETIC MUTATIONS; MORPHOLOGICAL IMAGE PROCESSING; PERIODOGRAMS; VIDEO SEQUENCES;

VIDEO RECORDING;

IMAGE ANALYSIS;

EID: 77950833815     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/SSIAI.2008.4512277     Document Type: Conference Paper

References (12)

1. J. White, E. Southgate, J. Thomson and S. Brenner, "The structure of the nervous system of the nematode Caenorhabditis elegans", Phil Trans R Soc Lond (Biol), vol. 314, pp. 1-34,1986.
2. L. Avery and J. H. Thomas, Feeding and defecation. C. elegans II, Cold Spring Harbor, NY, 1997.
3. W. F. Schafer, "Genetics of egg-laying in worms", Annu Rev Genet, vol. 40, pp. 487-509, 2006.
4. M. Driscoll and J. Kaplan, "Mechanotransduction. C. elegans II, Cold Spring Harbor, NY, 1997.
5. A. C. Hart, S. Sims and J. M. Kaplan, "Synaptic code for sensory modalities revealed by C. elegans GLR-1 glutamate receptor", Nature, vol. 378, pp. 82-85, 1995.
6. o in Caenorhabditis elegans", Science, vol. 267, pp. 1648-1651,1995.
7. S. Brenner, "The genetics of Caenorhabditis elegans", Genetics, vol. 77, pp. 71-94, 1974.
8. W. Geng, P. Cosman, C. Berry, Z. Feng, and W. R. Schafer, "Automatic tracking, feature extraction and classification of C. elegans phenotypes", IEEE Trans Biomed Eng, vol. 51, pp. 1811-1820,2004. (Pubitemid 39274428)
9. R. Gonzalez and R. Woods, "Digital Image Processing", 2nd ed. Prentice Hall, NJ, 2002.
10. K. S. Kindt, V. Viswanath, L. Macpherson, K. Quast, H. Hu, A. Patapoutian and W. R. Schafer, "Caenorhabditis elegans TRPA-1 functions in mechanosensation", Nat Neurosci, vol. 10, pp. 568-577,2007. (Pubitemid 46652443)
11. K. Huang, P. Cosman and W. R. Schafer, "Machine vision based detection of omega bends and reversals in C. elegans", J Neurosci Methods, vol. 158, pp. 323-336, 2006. (Pubitemid 44738085)
12. C. E. Metz, "Basic Principles of ROC Analysis", Seminars in Nuclear Medicine, vol. 8, no. 4, pp. 283-298, 1978.