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Two arguments have been offered to explain the predominant α-anomeric configuration of GlcNAc in aqueous solution. The first invokes a dipole-dipole interaction between the C1-O1 and the amide C - O bonds that is minimized in the α-pyranose. (34b) The second invokes hydrogen-bonding between the amide NAc side chain hydrogen and O1 as a means of preferentially stabilizing the α-pyranose (cis -fused five-membered ring). (34a) Both arguments presume an approximate α- anti /β- trans conformation of the NAc side chain in GlcNAc
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This survey was conducted on 1311 pdb files (from the RCSB PDB database) containing a total of 7994 GlcNAc residues. Within the latter group, 917 residues contained a H2-C2-N2-H torsion angle between 60° and -60°, producing an -11% α- syn population; the remaining -89% is α- trans. More pertinent to the present work, 463 residues contained a C2-N2-C1-C2 torsion angle between 60° and -60°, giving an -6% β- cis population
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This survey was conducted on 1311 pdb files (from the RCSB PDB database) containing a total of 7994 GlcNAc residues. Within the latter group, 917 residues contained a H2-C2-N2-H torsion angle between 60° and -60°, producing an -11% α- syn population; the remaining -89% is α- trans. More pertinent to the present work, 463 residues contained a C2-N2-C1-C2 torsion angle between 60° and -60°, giving an -6% β- cis population.
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77950839081
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Eliel and Wilen have suggested that the preference for trans amide conformations in solution is due to a combination of steric (attractive in trans, repulsive in cis) and charge interaction factors. See ref 44 for further discussion
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Eliel and Wilen have suggested that the preference for trans amide conformations in solution is due to a combination of steric (attractive in trans, repulsive in cis) and charge interaction factors. See ref 44 for further discussion.
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6 solvent (Figure S4 in Supporting Information). For 2, nearly identical coupling magnitudes were observed in both amide conformations (9.6 Hz in β- cis; 9.5 Hz in β- trans), suggesting similar bond conformations about bond α. On the other hand, the effect of amide conformation on α is probably smaller for N -formyl than for N -acetyl substituents. At present, similar J -coupling measurements have not been attempted in MeGlcNAc anomers because of the considerably less intense cis signals
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6 solvent (Figure S4 in Supporting Information). For 2, nearly identical coupling magnitudes were observed in both amide conformations (9.6 Hz in β- cis; 9.5 Hz in β- trans), suggesting similar bond conformations about bond α. On the other hand, the effect of amide conformation on α is probably smaller for N -formyl than for N -acetyl substituents. At present, similar J -coupling measurements have not been attempted in MeGlcNAc anomers because of the considerably less intense cis signals.
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